Wall clock time and date at job start Mon Mar 30 2020 06:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38237 * 120.00063 * 2 1 4 4 C 1.38226 * 120.00025 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.99857 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.00461 * 359.95470 * 4 3 2 7 7 C 1.38239 * 119.99681 * 0.02568 * 6 4 3 8 8 C 1.50699 * 120.00049 * 179.97438 * 7 6 4 9 9 S 1.81399 * 109.47054 * 90.00021 * 8 7 6 10 10 C 1.81398 * 103.00088 * 179.97438 * 9 8 7 11 11 H 1.08996 * 109.47382 * 304.99911 * 10 9 8 12 12 C 1.53000 * 109.47075 * 64.99775 * 10 9 8 13 13 C 1.50697 * 109.47282 * 184.99899 * 10 9 8 14 14 H 1.08007 * 119.99932 * 0.02562 * 13 10 9 15 15 C 1.37877 * 120.00441 * 180.02562 * 13 10 9 16 16 N 1.31514 * 119.99648 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 120.00396 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47143 * 59.99919 * 17 15 13 19 19 H 1.48499 * 109.47096 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46969 * 299.99627 * 17 15 13 21 21 C 1.38231 * 120.00212 * 180.23391 * 2 1 3 22 22 H 1.08999 * 109.46746 * 89.99929 * 1 2 3 23 23 H 1.09000 * 109.47039 * 209.99767 * 1 2 3 24 24 H 1.09001 * 109.47005 * 329.99598 * 1 2 3 25 25 H 1.08007 * 119.99719 * 0.02562 * 3 2 1 26 26 H 1.09000 * 109.47059 * 269.97653 * 5 4 3 27 27 H 1.08997 * 109.47437 * 29.98017 * 5 4 3 28 28 H 1.09004 * 109.46785 * 149.97920 * 5 4 3 29 29 H 1.07993 * 120.00649 * 180.02562 * 6 4 3 30 30 H 1.09000 * 109.47247 * 330.00049 * 8 7 6 31 31 H 1.09001 * 109.47358 * 209.99475 * 8 7 6 32 32 H 1.09008 * 109.46989 * 60.00236 * 12 10 9 33 33 H 1.09003 * 109.46901 * 179.97438 * 12 10 9 34 34 H 1.08996 * 109.47188 * 299.99959 * 12 10 9 35 35 H 0.96998 * 120.00397 * 179.97438 * 16 15 13 36 36 H 1.08004 * 119.99884 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3340 2.5023 -0.0011 6 6 4.2718 0.0001 -0.0001 7 6 3.5806 -1.1971 0.0003 8 6 4.3341 -2.5022 0.0002 9 16 4.6371 -3.0257 1.7104 10 6 5.5375 -4.5870 1.5058 11 1 4.9553 -5.2629 0.8796 12 6 6.8885 -4.3134 0.8418 13 6 5.7601 -5.2191 2.8556 14 1 5.3958 -4.7307 3.7473 15 6 6.4287 -6.4211 2.9522 16 7 6.8718 -7.0161 1.8663 17 14 6.7039 -7.2050 4.6252 18 1 5.3924 -7.4713 5.2689 19 1 7.4422 -8.4825 4.4579 20 1 7.4965 -6.2840 5.4790 21 6 2.1982 -1.1971 -0.0049 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.6582 2.1325 0.0004 26 1 4.5156 2.8165 -1.0289 27 1 3.7450 3.2622 0.5124 28 1 5.2865 2.3721 0.5127 29 1 5.3517 0.0000 -0.0001 30 1 5.2863 -2.3720 -0.5141 31 1 3.7448 -3.2620 -0.5133 32 1 7.4709 -3.6374 1.4680 33 1 7.4298 -5.2516 0.7193 34 1 6.7276 -3.8562 -0.1345 35 1 7.3425 -7.8615 1.9342 36 1 1.6582 -2.1324 -0.0091 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094718364.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:19 Heat of formation + Delta-G solvation = -7.102523 kcal Electronic energy + Delta-G solvation = -15352.821380 eV Core-core repulsion = 12926.837591 eV Total energy + Delta-G solvation = -2425.983789 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.109 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.42511 -33.99987 -33.44162 -33.35151 -30.32850 -27.90129 -26.59093 -26.58447 -25.20550 -21.37303 -20.62654 -20.53198 -16.51442 -16.11651 -15.64743 -15.31954 -14.63652 -14.33792 -13.94811 -13.35748 -13.22993 -13.12238 -12.95174 -12.65879 -12.56197 -12.52061 -11.90923 -11.75207 -11.47447 -11.05419 -10.97639 -10.88648 -10.77740 -10.55858 -10.42125 -10.01622 -9.31691 -8.73761 -8.41177 -8.40480 -8.28243 -6.63619 -6.13453 -4.21556 1.38868 1.52101 2.82811 3.28787 3.31947 3.36677 3.88840 3.99124 4.36698 4.82219 4.86063 4.90462 5.18001 5.25896 5.36075 5.39638 5.48238 5.55032 5.60329 5.69982 5.71689 5.84371 5.88720 5.98394 6.27372 6.30863 6.63411 6.67166 6.68750 6.81848 6.83388 6.88331 7.17483 7.41612 7.67311 7.86434 8.12374 8.77897 9.41675 10.92343 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.035247 B = 0.004509 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.205608 B = 6208.125652 C = 6488.384456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.086 4.086 3 C -0.128 4.128 4 C -0.086 4.086 5 C -0.112 4.112 6 C -0.111 4.111 7 C -0.045 4.045 8 C -0.054 4.054 9 S -0.297 6.297 10 C 0.110 3.890 11 H 0.042 0.958 12 C -0.138 4.138 13 C -0.504 4.504 14 H 0.065 0.935 15 C 0.068 3.932 16 N -0.890 5.890 17 Si 0.905 3.095 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.111 4.111 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.117 0.883 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.039 0.961 33 H 0.092 0.908 34 H 0.009 0.991 35 H 0.265 0.735 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.522 14.110 -5.987 17.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.086 4.086 3 C -0.147 4.147 4 C -0.086 4.086 5 C -0.168 4.168 6 C -0.130 4.130 7 C -0.046 4.046 8 C -0.201 4.201 9 S -0.067 6.067 10 C -0.018 4.018 11 H 0.060 0.940 12 C -0.197 4.197 13 C -0.543 4.543 14 H 0.083 0.917 15 C -0.135 4.135 16 N -0.528 5.528 17 Si 0.732 3.268 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.131 4.131 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.135 0.865 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.140 0.860 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.058 0.942 33 H 0.110 0.890 34 H 0.028 0.972 35 H 0.074 0.926 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.711 14.417 -5.100 17.127 hybrid contribution 0.593 -1.176 -0.279 1.346 sum -7.118 13.242 -5.378 15.967 Atomic orbital electron populations 1.20760 0.91388 1.02680 1.01999 1.19819 0.95835 0.93014 0.99916 1.20807 0.93467 0.97250 1.03151 1.19816 0.93765 0.95084 0.99932 1.20760 1.00000 0.94064 1.01999 1.20894 0.99829 0.91221 1.01096 1.19385 0.93469 0.93709 0.98078 1.22197 1.01975 0.96396 0.99525 1.86828 1.76709 1.34933 1.08237 1.20802 0.93661 0.87124 1.00182 0.94028 1.22046 0.99300 1.02447 0.95938 1.20640 1.37098 1.05310 0.91246 0.91704 1.24902 0.94962 0.96429 0.97245 1.69862 1.38007 1.17362 1.27615 0.86436 0.78526 0.78374 0.83454 1.19992 1.21103 1.20001 1.20900 0.93407 0.97660 1.01103 0.91456 0.91470 0.91795 0.86544 0.91456 0.91796 0.91479 0.86042 0.89991 0.90216 0.94171 0.88974 0.97175 0.92552 0.86028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 36.01 0.36 -0.75 16 2 C -0.09 -1.12 5.88 -104.62 -0.62 -1.73 16 3 C -0.13 -1.59 9.36 -39.59 -0.37 -1.96 16 4 C -0.09 -1.12 5.88 -104.63 -0.62 -1.73 16 5 C -0.11 -1.11 10.01 36.01 0.36 -0.75 16 6 C -0.11 -1.66 9.36 -39.58 -0.37 -2.03 16 7 C -0.05 -0.74 5.14 -104.62 -0.54 -1.27 16 8 C -0.05 -0.97 5.77 36.01 0.21 -0.76 16 9 S -0.30 -6.68 21.05 -107.50 -2.26 -8.94 16 10 C 0.11 2.81 2.76 -27.88 -0.08 2.74 16 11 H 0.04 1.14 8.14 -51.93 -0.42 0.71 16 12 C -0.14 -3.33 8.88 37.16 0.33 -3.00 16 13 C -0.50 -14.05 8.58 -34.44 -0.30 -14.35 16 14 H 0.06 1.84 7.71 -52.48 -0.40 1.44 16 15 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 16 N -0.89 -24.95 11.32 55.43 0.63 -24.33 16 17 Si 0.91 21.27 29.54 -169.99 -5.02 16.24 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 21 C -0.11 -1.66 9.36 -39.58 -0.37 -2.03 16 22 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 24 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 25 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 28 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 29 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.08 1.44 7.09 -51.92 -0.37 1.07 16 31 H 0.08 1.39 8.08 -51.92 -0.42 0.97 16 32 H 0.04 0.96 8.14 -51.92 -0.42 0.53 16 33 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 34 H 0.01 0.20 6.92 -51.93 -0.36 -0.16 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.12 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 312.78 15.07 4.71 4.71 Total: -1.00 -28.87 312.78 -9.67 -38.55 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -5.64 Total: -0.38 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: -2.09 Total: -25.85 kcal Atomic # 7 Polarization: -24.95 SS G_CDS: 0.63 Total: -24.33 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -6.68 SS G_CDS: -2.26 Total: -8.94 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.87 -9.67 -38.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094718364.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.443 kcal (2) G-P(sol) polarization free energy of solvation -28.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds