Wall clock time and date at job start Mon Mar 30 2020 06:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38237 * 120.00063 * 2 1 4 4 C 1.38226 * 120.00025 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.99857 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.00461 * 359.95470 * 4 3 2 7 7 C 1.38239 * 119.99681 * 0.02568 * 6 4 3 8 8 C 1.50699 * 120.00049 * 179.97438 * 7 6 4 9 9 S 1.81399 * 109.47054 * 90.00021 * 8 7 6 10 10 C 1.81398 * 103.00088 * 179.97438 * 9 8 7 11 11 H 1.08996 * 109.47382 * 304.99911 * 10 9 8 12 12 C 1.53000 * 109.47075 * 64.99775 * 10 9 8 13 13 C 1.50697 * 109.47282 * 184.99899 * 10 9 8 14 14 H 1.08007 * 119.99932 * 0.02562 * 13 10 9 15 15 C 1.37877 * 120.00441 * 180.02562 * 13 10 9 16 16 N 1.31514 * 119.99648 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 120.00396 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47143 * 59.99919 * 17 15 13 19 19 H 1.48499 * 109.47096 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46969 * 299.99627 * 17 15 13 21 21 C 1.38231 * 120.00212 * 180.23391 * 2 1 3 22 22 H 1.08999 * 109.46746 * 89.99929 * 1 2 3 23 23 H 1.09000 * 109.47039 * 209.99767 * 1 2 3 24 24 H 1.09001 * 109.47005 * 329.99598 * 1 2 3 25 25 H 1.08007 * 119.99719 * 0.02562 * 3 2 1 26 26 H 1.09000 * 109.47059 * 269.97653 * 5 4 3 27 27 H 1.08997 * 109.47437 * 29.98017 * 5 4 3 28 28 H 1.09004 * 109.46785 * 149.97920 * 5 4 3 29 29 H 1.07993 * 120.00649 * 180.02562 * 6 4 3 30 30 H 1.09000 * 109.47247 * 330.00049 * 8 7 6 31 31 H 1.09001 * 109.47358 * 209.99475 * 8 7 6 32 32 H 1.09008 * 109.46989 * 60.00236 * 12 10 9 33 33 H 1.09003 * 109.46901 * 179.97438 * 12 10 9 34 34 H 1.08996 * 109.47188 * 299.99959 * 12 10 9 35 35 H 0.96998 * 120.00397 * 179.97438 * 16 15 13 36 36 H 1.08004 * 119.99884 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3340 2.5023 -0.0011 6 6 4.2718 0.0001 -0.0001 7 6 3.5806 -1.1971 0.0003 8 6 4.3341 -2.5022 0.0002 9 16 4.6371 -3.0257 1.7104 10 6 5.5375 -4.5870 1.5058 11 1 4.9553 -5.2629 0.8796 12 6 6.8885 -4.3134 0.8418 13 6 5.7601 -5.2191 2.8556 14 1 5.3958 -4.7307 3.7473 15 6 6.4287 -6.4211 2.9522 16 7 6.8718 -7.0161 1.8663 17 14 6.7039 -7.2050 4.6252 18 1 5.3924 -7.4713 5.2689 19 1 7.4422 -8.4825 4.4579 20 1 7.4965 -6.2840 5.4790 21 6 2.1982 -1.1971 -0.0049 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.6582 2.1325 0.0004 26 1 4.5156 2.8165 -1.0289 27 1 3.7450 3.2622 0.5124 28 1 5.2865 2.3721 0.5127 29 1 5.3517 0.0000 -0.0001 30 1 5.2863 -2.3720 -0.5141 31 1 3.7448 -3.2620 -0.5133 32 1 7.4709 -3.6374 1.4680 33 1 7.4298 -5.2516 0.7193 34 1 6.7276 -3.8562 -0.1345 35 1 7.3425 -7.8615 1.9342 36 1 1.6582 -2.1324 -0.0091 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094718364.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:18 Heat of formation + Delta-G solvation = -19.841823 kcal Electronic energy + Delta-G solvation = -15353.373797 eV Core-core repulsion = 12926.837591 eV Total energy + Delta-G solvation = -2426.536206 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.109 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.48007 -36.06790 -34.51022 -34.37105 -32.38882 -28.95819 -27.76236 -27.55343 -27.20370 -23.34568 -21.74935 -21.60246 -18.53101 -17.38708 -17.08996 -16.71492 -16.38439 -15.58756 -15.31198 -14.82889 -14.66626 -14.20948 -13.98535 -13.96393 -13.79715 -13.73007 -13.30233 -12.96477 -12.91126 -12.73783 -12.62873 -12.41828 -12.26367 -12.01084 -11.87317 -11.73795 -11.30030 -10.72440 -10.39581 -9.46357 -9.44473 -8.45470 -8.22217 -6.39226 0.18500 0.46412 1.28277 1.41410 1.42637 1.51878 2.06079 2.38809 2.88057 3.05634 3.68580 3.78493 3.95589 4.20434 4.24259 4.42457 4.52109 4.57693 4.64317 4.68986 4.72213 4.84408 4.84692 4.86051 4.88379 5.00730 5.09065 5.25361 5.33926 5.38255 5.58796 5.63043 5.64815 5.72511 5.76810 6.05912 6.13951 6.62978 7.27622 8.82296 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.035247 B = 0.004509 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.205608 B = 6208.125652 C = 6488.384456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.088 4.088 3 C -0.126 4.126 4 C -0.088 4.088 5 C -0.110 4.110 6 C -0.127 4.127 7 C -0.069 4.069 8 C -0.036 4.036 9 S -0.318 6.318 10 C 0.106 3.894 11 H 0.014 0.986 12 C -0.123 4.123 13 C -0.529 4.529 14 H 0.053 0.947 15 C 0.025 3.975 16 N -0.912 5.912 17 Si 0.967 3.033 18 H -0.271 1.271 19 H -0.275 1.275 20 H -0.270 1.270 21 C -0.128 4.128 22 H 0.082 0.918 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.148 0.852 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.121 0.879 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.032 0.968 35 H 0.268 0.732 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.411 16.009 -5.984 19.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.088 4.088 3 C -0.144 4.144 4 C -0.088 4.088 5 C -0.167 4.167 6 C -0.147 4.147 7 C -0.070 4.070 8 C -0.183 4.183 9 S -0.087 6.087 10 C -0.022 4.022 11 H 0.032 0.968 12 C -0.183 4.183 13 C -0.568 4.568 14 H 0.071 0.929 15 C -0.176 4.176 16 N -0.550 5.550 17 Si 0.792 3.208 18 H -0.196 1.196 19 H -0.200 1.200 20 H -0.195 1.195 21 C -0.148 4.148 22 H 0.101 0.899 23 H 0.084 0.916 24 H 0.100 0.900 25 H 0.166 0.834 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.139 0.861 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.598 16.315 -5.099 19.133 hybrid contribution 0.781 -1.645 -0.364 1.857 sum -7.816 14.670 -5.462 17.497 Atomic orbital electron populations 1.20821 0.89096 1.03533 1.03223 1.20200 0.97585 0.92457 0.98549 1.21230 0.93429 0.98291 1.01489 1.20203 0.94434 0.95617 0.98523 1.20821 0.99844 0.92764 1.03233 1.21031 1.00031 0.91711 1.01890 1.19316 0.94052 0.93001 1.00619 1.22172 1.02585 0.97651 0.95884 1.86717 1.76281 1.32863 1.12846 1.20605 0.94274 0.88409 0.98932 0.96794 1.21855 0.98211 1.01318 0.96933 1.20879 1.37920 1.06245 0.91790 0.92905 1.25696 0.94404 0.96705 1.00843 1.69966 1.38056 1.17611 1.29390 0.85466 0.78532 0.77715 0.79127 1.19635 1.20034 1.19534 1.21033 0.93085 0.98697 1.01987 0.89942 0.91638 0.89965 0.83445 0.89935 0.89992 0.91576 0.86137 0.89622 0.90112 0.94520 0.91117 0.94881 0.92257 0.86281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 10.01 71.24 0.71 -1.17 16 2 C -0.09 -2.10 5.88 -19.86 -0.12 -2.22 16 3 C -0.13 -2.75 9.36 22.27 0.21 -2.54 16 4 C -0.09 -2.09 5.88 -19.87 -0.12 -2.20 16 5 C -0.11 -1.85 10.01 71.24 0.71 -1.14 16 6 C -0.13 -3.69 9.36 22.27 0.21 -3.48 16 7 C -0.07 -2.22 5.14 -19.87 -0.10 -2.32 16 8 C -0.04 -1.30 5.77 71.24 0.41 -0.89 16 9 S -0.32 -14.57 21.05 -56.49 -1.19 -15.76 16 10 C 0.11 5.58 2.76 29.85 0.08 5.66 16 11 H 0.01 0.80 8.14 -2.39 -0.02 0.78 16 12 C -0.12 -6.09 8.88 71.98 0.64 -5.45 16 13 C -0.53 -30.28 8.58 25.60 0.22 -30.06 16 14 H 0.05 3.08 7.71 -2.91 -0.02 3.05 16 15 C 0.02 1.37 5.30 84.65 0.45 1.82 16 16 N -0.91 -51.88 11.32 21.45 0.24 -51.64 16 17 Si 0.97 43.80 29.54 68.60 2.03 45.82 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 C -0.13 -3.76 9.36 22.27 0.21 -3.55 16 22 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.06 1.15 8.09 -2.39 -0.02 1.13 16 24 H 0.08 1.11 8.09 -2.39 -0.02 1.10 16 25 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 26 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.08 1.10 8.09 -2.39 -0.02 1.08 16 28 H 0.07 1.13 8.09 -2.38 -0.02 1.12 16 29 H 0.12 3.41 8.06 -2.91 -0.02 3.39 16 30 H 0.09 3.02 7.09 -2.39 -0.02 3.00 16 31 H 0.08 2.89 8.08 -2.39 -0.02 2.87 16 32 H 0.04 1.77 8.14 -2.38 -0.02 1.76 16 33 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 34 H 0.03 1.42 6.92 -2.39 -0.02 1.40 16 35 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 36 H 0.12 3.43 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -62.59 312.78 5.63 -56.96 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 1.04 Total: 12.16 kcal Atomic # 6 Polarization: -51.06 SS G_CDS: 3.52 Total: -47.54 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 0.24 Total: -51.64 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -14.57 SS G_CDS: -1.19 Total: -15.76 kcal Total: -62.59 5.63 -56.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094718364.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.113 kcal (2) G-P(sol) polarization free energy of solvation -62.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds