Wall clock time and date at job start Mon Mar 30 2020 06:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38231 * 120.00219 * 2 1 4 4 C 1.38240 * 120.00322 * 180.02562 * 3 2 1 5 5 C 1.50692 * 120.00163 * 179.97438 * 4 3 2 6 6 C 1.38234 * 119.99418 * 359.95255 * 4 3 2 7 7 C 1.38235 * 120.00366 * 0.02562 * 6 4 3 8 8 C 1.50698 * 119.99791 * 179.97438 * 7 6 4 9 9 S 1.81397 * 109.47159 * 90.00233 * 8 7 6 10 10 C 1.81405 * 103.00221 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.46692 * 55.00220 * 10 9 8 12 12 C 1.52997 * 109.47264 * 295.00358 * 10 9 8 13 13 C 1.50697 * 109.47038 * 174.99902 * 10 9 8 14 14 H 1.07999 * 120.00055 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99687 * 180.02562 * 13 10 9 16 16 N 1.31511 * 120.00458 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99926 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.46980 * 89.99582 * 17 15 13 19 19 H 1.48493 * 109.47135 * 209.99651 * 17 15 13 20 20 H 1.48498 * 109.47274 * 330.00048 * 17 15 13 21 21 C 1.38230 * 120.00006 * 0.25871 * 7 6 4 22 22 H 1.09000 * 109.47323 * 89.99532 * 1 2 3 23 23 H 1.08997 * 109.47523 * 209.99963 * 1 2 3 24 24 H 1.08997 * 109.47237 * 329.99892 * 1 2 3 25 25 H 1.08003 * 119.99979 * 0.02562 * 3 2 1 26 26 H 1.09007 * 109.47220 * 269.97511 * 5 4 3 27 27 H 1.08998 * 109.47476 * 29.97123 * 5 4 3 28 28 H 1.08998 * 109.47539 * 149.97833 * 5 4 3 29 29 H 1.08008 * 119.99509 * 180.02562 * 6 4 3 30 30 H 1.09001 * 109.47280 * 329.99998 * 8 7 6 31 31 H 1.09000 * 109.47243 * 210.00324 * 8 7 6 32 32 H 1.09002 * 109.47153 * 299.99579 * 12 10 9 33 33 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 34 34 H 1.09004 * 109.47261 * 59.99751 * 12 10 9 35 35 H 0.96999 * 120.00480 * 179.97438 * 16 15 13 36 36 H 1.07999 * 120.00100 * 179.72313 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3340 2.5021 -0.0011 6 6 4.2716 -0.0001 -0.0001 7 6 3.5804 -1.1972 0.0004 8 6 4.3339 -2.5023 0.0003 9 16 4.6369 -3.0257 1.7105 10 6 5.5374 -4.5871 1.5060 11 1 6.4135 -4.4218 0.8789 12 6 4.6236 -5.6199 0.8434 13 6 5.9744 -5.0954 2.8556 14 1 5.7341 -4.5355 3.7473 15 6 6.6810 -6.2754 2.9521 16 7 6.9733 -6.9576 1.8664 17 14 7.2222 -6.9059 4.6252 18 1 6.1645 -7.7823 5.1897 19 1 8.4807 -7.6803 4.4790 20 1 7.4513 -5.7565 5.5370 21 6 2.1981 -1.1972 -0.0050 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8899 0.5138 25 1 1.6582 2.1324 0.0004 26 1 4.5157 2.8164 -1.0290 27 1 3.7450 3.2621 0.5123 28 1 5.2865 2.3721 0.5127 29 1 5.3517 -0.0001 -0.0001 30 1 5.2862 -2.3720 -0.5139 31 1 3.7447 -3.2620 -0.5132 32 1 3.7475 -5.7853 1.4704 33 1 5.1649 -6.5580 0.7201 34 1 4.3075 -5.2522 -0.1329 35 1 7.4708 -7.7875 1.9342 36 1 1.6581 -2.1325 -0.0092 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094718365.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:20 Heat of formation + Delta-G solvation = -7.172245 kcal Electronic energy + Delta-G solvation = -15352.893822 eV Core-core repulsion = 12926.907010 eV Total energy + Delta-G solvation = -2425.986812 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.109 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.42503 -34.00112 -33.44218 -33.35219 -30.33020 -27.90169 -26.59101 -26.58455 -25.20779 -21.37388 -20.62653 -20.53242 -16.51643 -16.11708 -15.64742 -15.32206 -14.63501 -14.33697 -13.94736 -13.35691 -13.22977 -13.12575 -12.95319 -12.66089 -12.56200 -12.52119 -11.91261 -11.75303 -11.47474 -11.05772 -10.98163 -10.88639 -10.77857 -10.53297 -10.43188 -10.02056 -9.31092 -8.73337 -8.41667 -8.40638 -8.28285 -6.63657 -6.13723 -4.21734 1.38872 1.52071 2.82790 3.26612 3.32610 3.38252 3.88829 3.99105 4.36574 4.82220 4.86085 4.90477 5.17836 5.25896 5.36068 5.39620 5.48213 5.55001 5.60297 5.69977 5.71696 5.84380 5.88722 5.98385 6.27376 6.30854 6.63264 6.67152 6.68735 6.81731 6.83376 6.88227 7.17476 7.41594 7.67113 7.86485 8.12178 8.78078 9.41594 10.92102 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.035249 B = 0.004509 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.160959 B = 6207.930183 C = 6488.590225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.086 4.086 3 C -0.128 4.128 4 C -0.086 4.086 5 C -0.112 4.112 6 C -0.111 4.111 7 C -0.045 4.045 8 C -0.054 4.054 9 S -0.297 6.297 10 C 0.109 3.891 11 H 0.042 0.958 12 C -0.138 4.138 13 C -0.503 4.503 14 H 0.065 0.935 15 C 0.068 3.932 16 N -0.890 5.890 17 Si 0.905 3.095 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.111 4.111 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.117 0.883 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.122 0.878 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.039 0.961 33 H 0.092 0.908 34 H 0.009 0.991 35 H 0.264 0.736 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.464 13.585 -5.984 17.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.086 4.086 3 C -0.147 4.147 4 C -0.086 4.086 5 C -0.168 4.168 6 C -0.131 4.131 7 C -0.046 4.046 8 C -0.201 4.201 9 S -0.067 6.067 10 C -0.018 4.018 11 H 0.060 0.940 12 C -0.197 4.197 13 C -0.542 4.542 14 H 0.084 0.916 15 C -0.136 4.136 16 N -0.528 5.528 17 Si 0.732 3.268 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.131 4.131 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.135 0.865 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.140 0.860 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.058 0.942 33 H 0.110 0.890 34 H 0.028 0.972 35 H 0.074 0.926 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.634 13.909 -5.093 17.144 hybrid contribution 0.717 -1.117 -0.287 1.358 sum -7.917 12.792 -5.381 15.977 Atomic orbital electron populations 1.20757 0.91393 1.02675 1.01998 1.19817 0.95831 0.93015 0.99927 1.20809 0.93469 0.97249 1.03153 1.19817 0.93762 0.95085 0.99919 1.20758 1.00006 0.94062 1.02001 1.20902 0.99845 0.91226 1.01091 1.19381 0.93477 0.93701 0.98079 1.22197 1.01970 0.96404 0.99527 1.86830 1.77093 1.34546 1.08232 1.20810 0.94004 0.86786 1.00204 0.94018 1.22046 0.99111 1.02625 0.95944 1.20680 1.35375 1.06893 0.91271 0.91645 1.24904 0.95375 0.96040 0.97240 1.69870 1.39511 1.15887 1.27571 0.86380 0.78060 0.78943 0.83450 1.20424 1.21033 1.19633 1.20895 0.93402 0.97645 1.01109 0.91457 0.91478 0.91796 0.86546 0.91456 0.91797 0.91469 0.86024 0.90216 0.89993 0.94167 0.88980 0.97179 0.92608 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 36.00 0.36 -0.74 16 2 C -0.09 -1.12 5.88 -104.63 -0.62 -1.73 16 3 C -0.13 -1.59 9.36 -39.58 -0.37 -1.96 16 4 C -0.09 -1.12 5.88 -104.63 -0.62 -1.73 16 5 C -0.11 -1.11 10.01 36.00 0.36 -0.75 16 6 C -0.11 -1.66 9.36 -39.58 -0.37 -2.03 16 7 C -0.05 -0.74 5.14 -104.63 -0.54 -1.27 16 8 C -0.05 -0.97 5.77 36.00 0.21 -0.76 16 9 S -0.30 -6.67 21.05 -107.50 -2.26 -8.94 16 10 C 0.11 2.80 2.76 -27.89 -0.08 2.73 16 11 H 0.04 1.14 8.14 -51.92 -0.42 0.72 16 12 C -0.14 -3.32 8.88 37.16 0.33 -2.99 16 13 C -0.50 -14.03 8.58 -34.44 -0.30 -14.32 16 14 H 0.07 1.86 7.71 -52.49 -0.40 1.46 16 15 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 16 N -0.89 -24.95 11.32 55.43 0.63 -24.32 16 17 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 C -0.11 -1.66 9.36 -39.58 -0.37 -2.03 16 22 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 24 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 25 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 26 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 27 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 28 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 29 H 0.12 1.74 8.06 -52.48 -0.42 1.32 16 30 H 0.08 1.39 8.09 -51.92 -0.42 0.97 16 31 H 0.08 1.44 7.08 -51.92 -0.37 1.07 16 32 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 34 H 0.01 0.20 6.92 -51.93 -0.36 -0.16 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 312.78 15.07 4.71 4.71 Total: -1.00 -28.90 312.78 -9.67 -38.57 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -5.64 Total: -0.42 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -2.09 Total: -25.85 kcal Atomic # 7 Polarization: -24.95 SS G_CDS: 0.63 Total: -24.32 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -6.67 SS G_CDS: -2.26 Total: -8.94 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.90 -9.67 -38.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094718365.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.399 kcal (2) G-P(sol) polarization free energy of solvation -28.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds