Wall clock time and date at job start Mon Mar 30 2020 06:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38231 * 120.00219 * 2 1 4 4 C 1.38240 * 120.00322 * 180.02562 * 3 2 1 5 5 C 1.50692 * 120.00163 * 179.97438 * 4 3 2 6 6 C 1.38234 * 119.99418 * 359.95255 * 4 3 2 7 7 C 1.38235 * 120.00366 * 0.02562 * 6 4 3 8 8 C 1.50698 * 119.99791 * 179.97438 * 7 6 4 9 9 S 1.81397 * 109.47159 * 90.00233 * 8 7 6 10 10 C 1.81405 * 103.00221 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.46692 * 55.00220 * 10 9 8 12 12 C 1.52997 * 109.47264 * 295.00358 * 10 9 8 13 13 C 1.50697 * 109.47038 * 174.99902 * 10 9 8 14 14 H 1.07999 * 120.00055 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99687 * 180.02562 * 13 10 9 16 16 N 1.31511 * 120.00458 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99926 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.46980 * 89.99582 * 17 15 13 19 19 H 1.48493 * 109.47135 * 209.99651 * 17 15 13 20 20 H 1.48498 * 109.47274 * 330.00048 * 17 15 13 21 21 C 1.38230 * 120.00006 * 0.25871 * 7 6 4 22 22 H 1.09000 * 109.47323 * 89.99532 * 1 2 3 23 23 H 1.08997 * 109.47523 * 209.99963 * 1 2 3 24 24 H 1.08997 * 109.47237 * 329.99892 * 1 2 3 25 25 H 1.08003 * 119.99979 * 0.02562 * 3 2 1 26 26 H 1.09007 * 109.47220 * 269.97511 * 5 4 3 27 27 H 1.08998 * 109.47476 * 29.97123 * 5 4 3 28 28 H 1.08998 * 109.47539 * 149.97833 * 5 4 3 29 29 H 1.08008 * 119.99509 * 180.02562 * 6 4 3 30 30 H 1.09001 * 109.47280 * 329.99998 * 8 7 6 31 31 H 1.09000 * 109.47243 * 210.00324 * 8 7 6 32 32 H 1.09002 * 109.47153 * 299.99579 * 12 10 9 33 33 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 34 34 H 1.09004 * 109.47261 * 59.99751 * 12 10 9 35 35 H 0.96999 * 120.00480 * 179.97438 * 16 15 13 36 36 H 1.07999 * 120.00100 * 179.72313 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3340 2.5021 -0.0011 6 6 4.2716 -0.0001 -0.0001 7 6 3.5804 -1.1972 0.0004 8 6 4.3339 -2.5023 0.0003 9 16 4.6369 -3.0257 1.7105 10 6 5.5374 -4.5871 1.5060 11 1 6.4135 -4.4218 0.8789 12 6 4.6236 -5.6199 0.8434 13 6 5.9744 -5.0954 2.8556 14 1 5.7341 -4.5355 3.7473 15 6 6.6810 -6.2754 2.9521 16 7 6.9733 -6.9576 1.8664 17 14 7.2222 -6.9059 4.6252 18 1 6.1645 -7.7823 5.1897 19 1 8.4807 -7.6803 4.4790 20 1 7.4513 -5.7565 5.5370 21 6 2.1981 -1.1972 -0.0050 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8899 0.5138 25 1 1.6582 2.1324 0.0004 26 1 4.5157 2.8164 -1.0290 27 1 3.7450 3.2621 0.5123 28 1 5.2865 2.3721 0.5127 29 1 5.3517 -0.0001 -0.0001 30 1 5.2862 -2.3720 -0.5139 31 1 3.7447 -3.2620 -0.5132 32 1 3.7475 -5.7853 1.4704 33 1 5.1649 -6.5580 0.7201 34 1 4.3075 -5.2522 -0.1329 35 1 7.4708 -7.7875 1.9342 36 1 1.6581 -2.1325 -0.0092 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094718365.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:20 Heat of formation + Delta-G solvation = -19.936710 kcal Electronic energy + Delta-G solvation = -15353.447331 eV Core-core repulsion = 12926.907010 eV Total energy + Delta-G solvation = -2426.540321 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.109 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.47982 -36.06926 -34.51067 -34.37143 -32.39050 -28.95851 -27.76285 -27.55337 -27.20557 -23.34642 -21.74935 -21.60238 -18.53455 -17.38856 -17.09004 -16.71520 -16.38279 -15.58563 -15.31520 -14.83147 -14.66673 -14.21029 -13.98834 -13.96329 -13.79728 -13.73191 -13.30248 -12.96464 -12.91960 -12.72294 -12.62904 -12.42878 -12.26161 -12.01188 -11.87280 -11.73888 -11.29571 -10.72153 -10.40008 -9.46364 -9.44421 -8.45505 -8.22490 -6.39415 0.18521 0.46402 1.28292 1.40719 1.41422 1.53499 2.06092 2.38637 2.88057 3.05399 3.68588 3.78519 3.95629 4.20447 4.24264 4.42470 4.52108 4.57680 4.64281 4.69011 4.72226 4.84378 4.84622 4.85976 4.88361 5.00747 5.09082 5.25388 5.33984 5.38276 5.58747 5.63053 5.64824 5.72523 5.76810 6.05766 6.13961 6.63088 7.27545 8.82210 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.035249 B = 0.004509 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.160959 B = 6207.930183 C = 6488.590225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.088 4.088 3 C -0.126 4.126 4 C -0.088 4.088 5 C -0.110 4.110 6 C -0.128 4.128 7 C -0.069 4.069 8 C -0.036 4.036 9 S -0.318 6.318 10 C 0.105 3.895 11 H 0.014 0.986 12 C -0.123 4.123 13 C -0.528 4.528 14 H 0.053 0.947 15 C 0.025 3.975 16 N -0.912 5.912 17 Si 0.968 3.032 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.271 1.271 21 C -0.127 4.127 22 H 0.082 0.918 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.148 0.852 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.032 0.968 35 H 0.268 0.732 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.671 15.282 -5.990 19.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.088 4.088 3 C -0.144 4.144 4 C -0.088 4.088 5 C -0.167 4.167 6 C -0.148 4.148 7 C -0.070 4.070 8 C -0.183 4.183 9 S -0.087 6.087 10 C -0.022 4.022 11 H 0.032 0.968 12 C -0.183 4.183 13 C -0.567 4.567 14 H 0.071 0.929 15 C -0.177 4.177 16 N -0.550 5.550 17 Si 0.792 3.208 18 H -0.196 1.196 19 H -0.201 1.201 20 H -0.196 1.196 21 C -0.147 4.147 22 H 0.101 0.899 23 H 0.084 0.916 24 H 0.100 0.900 25 H 0.166 0.834 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.137 0.863 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.841 15.602 -5.103 19.139 hybrid contribution 1.032 -1.509 -0.368 1.865 sum -8.810 14.093 -5.471 17.497 Atomic orbital electron populations 1.20818 0.89057 1.03553 1.03235 1.20204 0.97602 0.92449 0.98518 1.21231 0.93391 0.98330 1.01493 1.20198 0.94459 0.95578 0.98552 1.20818 0.99832 0.92801 1.03225 1.21034 0.99986 0.91802 1.01982 1.19314 0.94100 0.92954 1.00619 1.22171 1.02485 0.97754 0.95883 1.86720 1.76333 1.32816 1.12844 1.20612 0.93768 0.88920 0.98943 0.96780 1.21855 0.98235 1.01283 0.96942 1.20905 1.36456 1.07583 0.91791 0.92916 1.25696 0.95112 0.96018 1.00833 1.69971 1.39599 1.16128 1.29347 0.85406 0.77999 0.78319 0.79085 1.19624 1.20059 1.19588 1.21032 0.93005 0.98733 1.01895 0.89933 0.91573 0.89995 0.83448 0.89943 0.89966 0.91637 0.86287 0.90113 0.89620 0.94506 0.91125 0.94883 0.92263 0.86127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 10.01 71.23 0.71 -1.14 16 2 C -0.09 -2.08 5.88 -19.87 -0.12 -2.20 16 3 C -0.13 -2.75 9.36 22.27 0.21 -2.54 16 4 C -0.09 -2.10 5.88 -19.87 -0.12 -2.22 16 5 C -0.11 -1.88 10.01 71.23 0.71 -1.17 16 6 C -0.13 -3.76 9.36 22.27 0.21 -3.55 16 7 C -0.07 -2.21 5.14 -19.87 -0.10 -2.32 16 8 C -0.04 -1.30 5.77 71.24 0.41 -0.89 16 9 S -0.32 -14.58 21.05 -56.49 -1.19 -15.77 16 10 C 0.11 5.57 2.76 29.85 0.08 5.65 16 11 H 0.01 0.81 8.14 -2.39 -0.02 0.79 16 12 C -0.12 -6.08 8.88 71.98 0.64 -5.45 16 13 C -0.53 -30.23 8.58 25.60 0.22 -30.02 16 14 H 0.05 3.08 7.71 -2.91 -0.02 3.06 16 15 C 0.02 1.36 5.30 84.66 0.45 1.81 16 16 N -0.91 -51.88 11.32 21.45 0.24 -51.63 16 17 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 C -0.13 -3.68 9.36 22.27 0.21 -3.48 16 22 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 23 H 0.07 1.13 8.09 -2.39 -0.02 1.12 16 24 H 0.08 1.10 8.09 -2.39 -0.02 1.08 16 25 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 26 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 27 H 0.08 1.11 8.09 -2.39 -0.02 1.10 16 28 H 0.06 1.15 8.09 -2.39 -0.02 1.13 16 29 H 0.12 3.43 8.06 -2.91 -0.02 3.41 16 30 H 0.08 2.89 8.09 -2.39 -0.02 2.87 16 31 H 0.09 3.02 7.08 -2.39 -0.02 3.00 16 32 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 34 H 0.03 1.42 6.92 -2.38 -0.02 1.40 16 35 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 36 H 0.12 3.41 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -62.64 312.78 5.63 -57.01 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 1.04 Total: 12.05 kcal Atomic # 6 Polarization: -51.03 SS G_CDS: 3.52 Total: -47.51 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 0.24 Total: -51.63 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -14.58 SS G_CDS: -1.19 Total: -15.77 kcal Total: -62.64 5.63 -57.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094718365.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.076 kcal (2) G-P(sol) polarization free energy of solvation -62.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds