Wall clock time and date at job start Mon Mar 30 2020 06:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35630 * 116.99916 * 2 1 4 4 C 1.38704 * 120.15944 * 0.27960 * 3 2 1 5 5 C 1.38055 * 120.09208 * 180.25012 * 4 3 2 6 6 C 1.38562 * 120.40452 * 359.74756 * 5 4 3 7 7 C 1.37772 * 120.30545 * 359.97438 * 6 5 4 8 8 C 1.39762 * 119.90058 * 0.02562 * 7 6 5 9 9 C 1.47402 * 120.19509 * 179.97438 * 8 7 6 10 10 O 1.21513 * 120.00149 * 180.02562 * 9 8 7 11 11 O 1.34754 * 119.99824 * 359.72206 * 9 8 7 12 12 C 1.45202 * 116.99763 * 180.27224 * 11 9 8 13 13 H 1.09000 * 109.47281 * 330.00607 * 12 11 9 14 14 C 1.53000 * 109.46662 * 90.00236 * 12 11 9 15 15 C 1.50699 * 109.47212 * 210.00331 * 12 11 9 16 16 H 1.07999 * 120.00056 * 0.02562 * 15 12 11 17 17 C 1.37871 * 120.00046 * 180.02562 * 15 12 11 18 18 N 1.31515 * 120.00348 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 120.00043 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.47464 * 89.99991 * 19 17 15 21 21 H 1.48506 * 109.47365 * 210.00133 * 19 17 15 22 22 H 1.48502 * 109.47012 * 329.99553 * 19 17 15 23 23 H 1.08994 * 109.47020 * 299.99654 * 1 2 3 24 24 H 1.09005 * 109.47096 * 59.99831 * 1 2 3 25 25 H 1.09003 * 109.47374 * 180.02562 * 1 2 3 26 26 H 1.08005 * 119.95789 * 359.97438 * 4 3 2 27 27 H 1.08006 * 119.79926 * 179.76015 * 5 4 3 28 28 H 1.07995 * 119.84774 * 179.97438 * 6 5 4 29 29 H 1.08003 * 120.04459 * 180.02562 * 7 6 5 30 30 H 1.09000 * 109.47394 * 179.97438 * 14 12 11 31 31 H 1.08994 * 109.47916 * 299.99985 * 14 12 11 32 32 H 1.09000 * 109.46969 * 60.00181 * 14 12 11 33 33 H 0.96997 * 120.00512 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2085 0.0000 4 6 1.2925 2.3738 0.0059 5 6 1.9207 3.6032 0.0006 6 6 3.3039 3.6839 -0.0052 7 6 4.0673 2.5369 -0.0053 8 6 3.4446 1.2857 -0.0001 9 6 4.2550 0.0544 -0.0007 10 8 3.7100 -1.0317 0.0034 11 8 5.6002 0.1331 -0.0121 12 6 6.3338 -1.1199 -0.0182 13 1 5.7537 -1.8831 0.5005 14 6 6.5793 -1.5600 -1.4628 15 6 7.6553 -0.9317 0.6812 16 1 7.9175 0.0330 1.0898 17 6 8.5297 -1.9911 0.7994 18 7 8.2108 -3.1658 0.3015 19 14 10.1682 -1.7576 1.6657 20 1 10.0091 -2.0496 3.1129 21 1 11.1731 -2.6821 1.0818 22 1 10.6252 -0.3555 1.4908 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.2139 2.3195 0.0100 27 1 1.3303 4.5076 0.0013 28 1 3.7860 4.6503 -0.0097 29 1 5.1451 2.6047 -0.0095 30 1 7.1304 -2.5004 -1.4675 31 1 5.6235 -1.6962 -1.9687 32 1 7.1594 -0.7968 -1.9815 33 1 8.8258 -3.9112 0.3850 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113689351.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:08 Heat of formation + Delta-G solvation = -99.267669 kcal Electronic energy + Delta-G solvation = -18007.518515 eV Core-core repulsion = 14998.952180 eV Total energy + Delta-G solvation = -3008.566335 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.33896 -38.82850 -37.26567 -35.44883 -33.18776 -31.42476 -30.10440 -29.39190 -27.31747 -25.26634 -24.16155 -22.14351 -21.35419 -19.71875 -18.14517 -17.02669 -16.57847 -15.97626 -15.78412 -15.44117 -14.76637 -14.67906 -14.50287 -14.11797 -13.51490 -12.90526 -12.70120 -12.22197 -12.05949 -11.81084 -11.50854 -11.17726 -11.13365 -11.11433 -10.99928 -10.78374 -10.29456 -10.22997 -9.48775 -9.42038 -9.01469 -8.82435 -8.43595 -8.22241 -6.12939 -4.19543 0.94842 1.42071 3.18470 3.28201 3.28454 3.33216 3.37226 3.73066 4.03973 4.37934 4.71589 4.85953 5.02684 5.09647 5.14100 5.20045 5.31467 5.45096 5.52454 5.73126 5.94968 6.26548 6.28377 6.45780 6.72889 6.73828 6.97343 7.00210 7.24600 7.41237 7.66149 7.80640 8.02133 8.21392 8.74199 8.98170 9.45685 10.94613 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.032856 B = 0.005466 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.002026 B = 5121.609192 C = 5679.135834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.280 6.280 3 C 0.182 3.818 4 C -0.228 4.228 5 C -0.055 4.055 6 C -0.176 4.176 7 C -0.024 4.024 8 C -0.149 4.149 9 C 0.494 3.506 10 O -0.501 6.501 11 O -0.355 6.355 12 C 0.216 3.784 13 H 0.046 0.954 14 C -0.154 4.154 15 C -0.519 4.519 16 H 0.069 0.931 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.912 3.088 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.271 1.271 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.101 0.899 26 H 0.133 0.867 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.148 0.852 30 H 0.099 0.901 31 H 0.016 0.984 32 H 0.036 0.964 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.292 11.857 -1.182 17.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.191 6.191 3 C 0.134 3.866 4 C -0.247 4.247 5 C -0.074 4.074 6 C -0.194 4.194 7 C -0.042 4.042 8 C -0.151 4.151 9 C 0.338 3.662 10 O -0.391 6.391 11 O -0.272 6.272 12 C 0.164 3.836 13 H 0.064 0.936 14 C -0.212 4.212 15 C -0.557 4.557 16 H 0.087 0.913 17 C -0.140 4.140 18 N -0.527 5.527 19 Si 0.739 3.261 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.196 1.196 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.120 0.880 26 H 0.150 0.850 27 H 0.145 0.855 28 H 0.147 0.853 29 H 0.165 0.835 30 H 0.117 0.883 31 H 0.035 0.965 32 H 0.055 0.945 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.247 11.093 -1.207 17.321 hybrid contribution 0.525 0.048 0.391 0.656 sum -12.723 11.141 -0.816 16.931 Atomic orbital electron populations 1.23142 0.78989 1.04234 1.00953 1.86413 1.20579 1.25486 1.86625 1.19095 0.90836 0.84964 0.91697 1.21143 1.00051 0.91969 1.11535 1.21099 0.94796 0.96857 0.94606 1.21039 0.93698 0.98606 1.06033 1.21478 1.01279 0.90116 0.91311 1.18872 0.89717 0.93390 1.13142 1.20700 0.83070 0.88254 0.74186 1.90807 1.73294 1.29523 1.45440 1.86520 1.16838 1.41547 1.82301 1.20609 0.89909 0.78400 0.94671 0.93578 1.22153 0.98831 1.03546 0.96668 1.21029 1.00329 0.97607 1.36727 0.91325 1.24885 0.98814 0.94729 0.95588 1.69905 1.36892 1.01083 1.44867 0.86280 0.82200 0.78194 0.79474 1.20444 1.20991 1.19601 0.92712 0.92726 0.88034 0.84960 0.85546 0.85257 0.83468 0.88299 0.96498 0.94485 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 101.05 0.99 1.23 16 2 O -0.28 -4.75 8.57 -40.47 -0.35 -5.10 16 3 C 0.18 2.95 6.70 -38.67 -0.26 2.69 16 4 C -0.23 -2.75 9.03 -39.48 -0.36 -3.10 16 5 C -0.06 -0.59 10.03 -39.53 -0.40 -0.98 16 6 C -0.18 -2.06 10.02 -39.63 -0.40 -2.45 16 7 C -0.02 -0.36 9.61 -39.18 -0.38 -0.74 16 8 C -0.15 -2.76 5.89 -104.86 -0.62 -3.38 16 9 C 0.49 11.56 7.86 34.46 0.27 11.83 16 10 O -0.50 -13.03 14.42 -26.60 -0.38 -13.42 16 11 O -0.36 -8.92 9.11 -40.64 -0.37 -9.29 16 12 C 0.22 6.06 2.56 -27.88 -0.07 5.99 16 13 H 0.05 1.43 7.16 -51.93 -0.37 1.05 16 14 C -0.15 -4.07 9.33 37.16 0.35 -3.73 16 15 C -0.52 -14.91 8.90 -34.44 -0.31 -15.22 16 16 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 17 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 18 N -0.89 -25.81 11.32 55.43 0.63 -25.18 16 19 Si 0.91 21.39 29.54 -169.99 -5.02 16.37 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H 0.05 0.47 7.65 -51.93 -0.40 0.08 16 24 H 0.05 0.47 7.67 -51.93 -0.40 0.07 16 25 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.13 1.19 6.30 -52.48 -0.33 0.86 16 27 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 28 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.15 2.20 7.61 -52.48 -0.40 1.80 16 30 H 0.10 2.76 6.07 -51.93 -0.32 2.44 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.27 7.23 8.31 -40.82 -0.34 6.90 16 LS Contribution 288.45 15.07 4.35 4.35 Total: -1.00 -33.32 288.45 -6.29 -39.60 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -3.87 Total: -1.11 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -1.27 Total: -6.23 kcal Atomic # 7 Polarization: -25.81 SS G_CDS: 0.63 Total: -25.18 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -1.10 Total: -27.81 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.32 -6.29 -39.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689351.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.664 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds