Wall clock time and date at job start Mon Mar 30 2020 06:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35630 * 116.99916 * 2 1 4 4 C 1.38704 * 120.15944 * 0.27960 * 3 2 1 5 5 C 1.38055 * 120.09208 * 180.25012 * 4 3 2 6 6 C 1.38562 * 120.40452 * 359.74756 * 5 4 3 7 7 C 1.37772 * 120.30545 * 359.97438 * 6 5 4 8 8 C 1.39762 * 119.90058 * 0.02562 * 7 6 5 9 9 C 1.47402 * 120.19509 * 179.97438 * 8 7 6 10 10 O 1.21513 * 120.00149 * 180.02562 * 9 8 7 11 11 O 1.34754 * 119.99824 * 359.72206 * 9 8 7 12 12 C 1.45202 * 116.99763 * 180.27224 * 11 9 8 13 13 H 1.09000 * 109.47281 * 330.00607 * 12 11 9 14 14 C 1.53000 * 109.46662 * 90.00236 * 12 11 9 15 15 C 1.50699 * 109.47212 * 210.00331 * 12 11 9 16 16 H 1.07999 * 120.00056 * 0.02562 * 15 12 11 17 17 C 1.37871 * 120.00046 * 180.02562 * 15 12 11 18 18 N 1.31515 * 120.00348 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 120.00043 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.47464 * 89.99991 * 19 17 15 21 21 H 1.48506 * 109.47365 * 210.00133 * 19 17 15 22 22 H 1.48502 * 109.47012 * 329.99553 * 19 17 15 23 23 H 1.08994 * 109.47020 * 299.99654 * 1 2 3 24 24 H 1.09005 * 109.47096 * 59.99831 * 1 2 3 25 25 H 1.09003 * 109.47374 * 180.02562 * 1 2 3 26 26 H 1.08005 * 119.95789 * 359.97438 * 4 3 2 27 27 H 1.08006 * 119.79926 * 179.76015 * 5 4 3 28 28 H 1.07995 * 119.84774 * 179.97438 * 6 5 4 29 29 H 1.08003 * 120.04459 * 180.02562 * 7 6 5 30 30 H 1.09000 * 109.47394 * 179.97438 * 14 12 11 31 31 H 1.08994 * 109.47916 * 299.99985 * 14 12 11 32 32 H 1.09000 * 109.46969 * 60.00181 * 14 12 11 33 33 H 0.96997 * 120.00512 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2085 0.0000 4 6 1.2925 2.3738 0.0059 5 6 1.9207 3.6032 0.0006 6 6 3.3039 3.6839 -0.0052 7 6 4.0673 2.5369 -0.0053 8 6 3.4446 1.2857 -0.0001 9 6 4.2550 0.0544 -0.0007 10 8 3.7100 -1.0317 0.0034 11 8 5.6002 0.1331 -0.0121 12 6 6.3338 -1.1199 -0.0182 13 1 5.7537 -1.8831 0.5005 14 6 6.5793 -1.5600 -1.4628 15 6 7.6553 -0.9317 0.6812 16 1 7.9175 0.0330 1.0898 17 6 8.5297 -1.9911 0.7994 18 7 8.2108 -3.1658 0.3015 19 14 10.1682 -1.7576 1.6657 20 1 10.0091 -2.0496 3.1129 21 1 11.1731 -2.6821 1.0818 22 1 10.6252 -0.3555 1.4908 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.2139 2.3195 0.0100 27 1 1.3303 4.5076 0.0013 28 1 3.7860 4.6503 -0.0097 29 1 5.1451 2.6047 -0.0095 30 1 7.1304 -2.5004 -1.4675 31 1 5.6235 -1.6962 -1.9687 32 1 7.1594 -0.7968 -1.9815 33 1 8.8258 -3.9112 0.3850 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113689351.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:08 Heat of formation + Delta-G solvation = -119.878227 kcal Electronic energy + Delta-G solvation = -18008.412256 eV Core-core repulsion = 14998.952180 eV Total energy + Delta-G solvation = -3009.460076 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.66045 -40.48165 -38.34433 -37.42609 -35.32031 -32.69736 -31.43822 -31.13231 -28.22325 -27.47890 -25.60308 -23.46613 -22.83394 -21.49757 -19.47492 -18.65640 -18.42688 -17.50906 -17.03900 -16.91673 -16.42051 -16.36822 -15.70535 -15.37569 -14.75431 -14.57164 -14.23573 -13.91692 -13.55943 -13.16339 -13.09254 -12.98259 -12.83809 -12.58136 -12.38888 -12.15164 -12.11977 -12.05146 -11.58713 -11.25229 -10.98533 -10.61128 -10.10798 -9.29567 -8.28988 -6.46619 -0.23903 0.39748 1.41317 1.44383 1.55961 1.68360 2.00338 2.30635 2.42556 2.79625 3.01414 3.75579 3.86644 4.01067 4.23301 4.35584 4.37496 4.41181 4.49340 4.54911 4.69802 4.76295 4.80122 4.90709 5.10060 5.21062 5.33225 5.44908 5.47347 5.60234 5.77736 5.89762 6.06628 6.39728 6.59387 6.99754 7.25674 8.79358 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.032856 B = 0.005466 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.002026 B = 5121.609192 C = 5679.135834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.326 6.326 3 C 0.167 3.833 4 C -0.219 4.219 5 C -0.032 4.032 6 C -0.165 4.165 7 C -0.034 4.034 8 C -0.196 4.196 9 C 0.486 3.514 10 O -0.543 6.543 11 O -0.360 6.360 12 C 0.218 3.782 13 H 0.002 0.998 14 C -0.140 4.140 15 C -0.548 4.548 16 H 0.069 0.931 17 C 0.014 3.986 18 N -0.919 5.919 19 Si 0.988 3.012 20 H -0.272 1.272 21 H -0.274 1.274 22 H -0.260 1.260 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.106 0.894 26 H 0.169 0.831 27 H 0.178 0.822 28 H 0.166 0.834 29 H 0.137 0.863 30 H 0.083 0.917 31 H 0.018 0.982 32 H 0.047 0.953 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.217 15.039 -0.872 20.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.238 6.238 3 C 0.120 3.880 4 C -0.238 4.238 5 C -0.049 4.049 6 C -0.183 4.183 7 C -0.053 4.053 8 C -0.198 4.198 9 C 0.333 3.667 10 O -0.435 6.435 11 O -0.276 6.276 12 C 0.165 3.835 13 H 0.020 0.980 14 C -0.198 4.198 15 C -0.585 4.585 16 H 0.087 0.913 17 C -0.185 4.185 18 N -0.557 5.557 19 Si 0.810 3.190 20 H -0.197 1.197 21 H -0.199 1.199 22 H -0.184 1.184 23 H 0.095 0.905 24 H 0.096 0.904 25 H 0.124 0.876 26 H 0.187 0.813 27 H 0.196 0.804 28 H 0.184 0.816 29 H 0.155 0.845 30 H 0.101 0.899 31 H 0.037 0.963 32 H 0.066 0.934 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.198 14.296 -0.907 20.169 hybrid contribution 0.627 -0.871 0.286 1.111 sum -13.571 13.425 -0.621 19.100 Atomic orbital electron populations 1.23477 0.76108 1.05478 1.03120 1.86347 1.23813 1.26835 1.86794 1.19381 0.90228 0.86281 0.92117 1.21576 1.01625 0.90769 1.09791 1.21734 0.94565 0.98045 0.90570 1.21454 0.94385 0.98506 1.03969 1.21524 1.01318 0.90293 0.92143 1.18833 0.90585 0.92017 1.18356 1.21749 0.82306 0.89989 0.72678 1.90758 1.73480 1.31537 1.47720 1.86509 1.18411 1.39829 1.82898 1.20343 0.89637 0.78658 0.94888 0.98026 1.21968 0.98759 1.02942 0.96099 1.21288 1.00979 0.98189 1.38070 0.91276 1.25900 1.02745 0.94016 0.95839 1.70032 1.38394 1.01933 1.45313 0.85116 0.76915 0.78782 0.78170 1.19747 1.19875 1.18428 0.90454 0.90371 0.87562 0.81341 0.80438 0.81634 0.84469 0.89886 0.96311 0.93362 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -11.28 8.57 -68.50 -0.59 -11.86 16 3 C 0.17 5.37 6.70 22.86 0.15 5.52 16 4 C -0.22 -4.44 9.03 22.34 0.20 -4.24 16 5 C -0.03 -0.50 10.03 22.30 0.22 -0.27 16 6 C -0.17 -3.25 10.02 22.24 0.22 -3.03 16 7 C -0.03 -1.03 9.61 22.53 0.22 -0.82 16 8 C -0.20 -7.49 5.89 -20.02 -0.12 -7.61 16 9 C 0.49 24.35 7.86 70.24 0.55 24.90 16 10 O -0.54 -30.56 14.42 26.80 0.39 -30.17 16 11 O -0.36 -19.26 9.11 -56.65 -0.52 -19.77 16 12 C 0.22 12.95 2.56 29.85 0.08 13.03 16 13 H 0.00 0.13 7.16 -2.39 -0.02 0.11 16 14 C -0.14 -7.77 9.33 71.98 0.67 -7.10 16 15 C -0.55 -32.61 8.90 25.60 0.23 -32.38 16 16 H 0.07 3.99 7.81 -2.91 -0.02 3.97 16 17 C 0.01 0.82 5.30 84.65 0.45 1.27 16 18 N -0.92 -54.77 11.32 21.44 0.24 -54.52 16 19 Si 0.99 44.03 29.54 68.60 2.03 46.05 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 22 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 23 H 0.08 1.15 7.65 -2.39 -0.02 1.13 16 24 H 0.08 1.14 7.67 -2.38 -0.02 1.12 16 25 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.17 2.14 6.30 -2.91 -0.02 2.12 16 27 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 28 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 29 H 0.14 4.23 7.61 -2.91 -0.02 4.21 16 30 H 0.08 4.86 6.07 -2.39 -0.01 4.84 16 31 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -78.52 288.45 6.66 -71.87 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 1.11 Total: 7.79 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 3.99 Total: -9.37 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.24 Total: -54.52 kcal Atomic # 8 Polarization: -61.09 SS G_CDS: -0.72 Total: -61.81 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -78.52 6.66 -71.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689351.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.013 kcal (2) G-P(sol) polarization free energy of solvation -78.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds