Wall clock time and date at job start Mon Mar 30 2020 06:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35708 * 116.99720 * 2 1 4 4 C 1.39013 * 119.90278 * 180.02562 * 3 2 1 5 5 C 1.37681 * 120.08904 * 180.02562 * 4 3 2 6 6 C 1.39793 * 119.90432 * 0.23030 * 5 4 3 7 7 C 1.47471 * 120.08699 * 179.72811 * 6 5 4 8 8 O 1.21499 * 120.00358 * 359.97438 * 7 6 5 9 9 O 1.34753 * 119.99710 * 179.97438 * 7 6 5 10 10 C 1.45198 * 116.99634 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.47849 * 329.99923 * 10 9 7 12 12 C 1.53006 * 109.46819 * 90.00228 * 10 9 7 13 13 C 1.50701 * 109.46983 * 209.99597 * 10 9 7 14 14 H 1.08005 * 119.99740 * 0.02562 * 13 10 9 15 15 C 1.37876 * 120.00060 * 180.02562 * 13 10 9 16 16 N 1.31516 * 120.00280 * 179.97438 * 15 13 10 17 17 Si 1.86797 * 120.00130 * 0.02562 * 15 13 10 18 18 H 1.48502 * 109.47574 * 89.99195 * 17 15 13 19 19 H 1.48501 * 109.47075 * 209.99836 * 17 15 13 20 20 H 1.48500 * 109.46958 * 329.99554 * 17 15 13 21 21 C 1.39792 * 119.81864 * 359.49182 * 6 5 4 22 22 C 1.37685 * 119.90158 * 0.52826 * 21 6 5 23 23 H 1.09003 * 109.47211 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47348 * 300.00228 * 1 2 3 25 25 H 1.09001 * 109.47234 * 60.00195 * 1 2 3 26 26 H 1.07999 * 119.95583 * 0.02562 * 4 3 2 27 27 H 1.08002 * 120.04241 * 179.97438 * 5 4 3 28 28 H 1.09001 * 109.46943 * 179.97438 * 12 10 9 29 29 H 1.09000 * 109.46936 * 299.99234 * 12 10 9 30 30 H 1.08997 * 109.47279 * 59.99807 * 12 10 9 31 31 H 0.96998 * 120.00459 * 179.97438 * 16 15 13 32 32 H 1.07998 * 120.04964 * 180.25804 * 21 6 5 33 33 H 1.07995 * 119.95073 * 179.70326 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 3.4334 1.2797 -0.0005 5 6 4.0624 2.5044 0.0000 6 6 3.3028 3.6780 0.0059 7 6 3.9724 4.9919 0.0126 8 8 5.1857 5.0555 0.0134 9 8 3.2384 6.1220 0.0178 10 6 3.9644 7.3794 0.0248 11 1 4.9164 7.2466 0.5386 12 6 4.2205 7.8284 -1.4153 13 6 3.1494 8.4261 0.7398 14 1 2.1826 8.1715 1.1486 15 6 3.6379 9.7086 0.8723 16 7 2.9265 10.6222 1.4959 17 14 5.3097 10.1490 0.1648 18 1 5.1466 10.6215 -1.2336 19 1 5.9253 11.2251 0.9823 20 1 6.1862 8.9505 0.1831 21 6 1.9069 3.6026 0.0006 22 6 1.2859 2.3737 0.0005 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 4.0194 0.3725 -0.0014 27 1 5.1410 2.5583 0.0000 28 1 4.7651 8.7726 -1.4101 29 1 4.8100 7.0714 -1.9325 30 1 3.2685 7.9614 -1.9292 31 1 3.2703 11.5243 1.5894 32 1 1.3165 4.5069 0.0009 33 1 0.2076 2.3145 0.0012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113695087.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:12 Heat of formation + Delta-G solvation = -94.380510 kcal Electronic energy + Delta-G solvation = -17637.223096 eV Core-core repulsion = 14628.868684 eV Total energy + Delta-G solvation = -3008.354412 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.42105 -39.48285 -37.34604 -35.78571 -33.20995 -31.39965 -30.81297 -30.14712 -27.68128 -25.28397 -23.90733 -22.74291 -21.39564 -19.85737 -18.42227 -17.57332 -16.72791 -16.27112 -16.01031 -15.86945 -15.19493 -14.82470 -14.49060 -13.85471 -13.56264 -13.25681 -12.93861 -12.74303 -12.54853 -12.29972 -12.12539 -11.84409 -11.51774 -11.20364 -10.95381 -10.89210 -10.23281 -10.02173 -9.76967 -9.60733 -9.16142 -9.12464 -8.69146 -8.38013 -6.22963 -4.25349 0.86736 1.27232 2.93811 2.99129 3.19020 3.31395 3.33874 3.48912 3.88648 4.26827 4.61755 4.72462 4.87817 4.88496 5.08379 5.13981 5.21324 5.25428 5.36968 5.55757 5.91258 6.03000 6.16238 6.20568 6.28091 6.36298 6.47537 6.53375 6.62537 7.02596 7.13121 7.35572 7.50809 8.22625 8.59477 8.83596 9.34212 10.89131 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.044852 B = 0.004673 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.121348 B = 5990.380874 C = 6403.389932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.152 3.848 4 C -0.167 4.167 5 C -0.020 4.020 6 C -0.154 4.154 7 C 0.500 3.500 8 O -0.522 6.522 9 O -0.337 6.337 10 C 0.191 3.809 11 H 0.047 0.953 12 C -0.170 4.170 13 C -0.525 4.525 14 H 0.087 0.913 15 C 0.080 3.920 16 N -0.889 5.889 17 Si 0.879 3.121 18 H -0.273 1.273 19 H -0.290 1.290 20 H -0.262 1.262 21 C -0.019 4.019 22 C -0.223 4.223 23 H 0.100 0.900 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.137 0.863 27 H 0.144 0.856 28 H 0.056 0.944 29 H 0.037 0.963 30 H 0.063 0.937 31 H 0.269 0.731 32 H 0.146 0.854 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.736 -18.791 -4.195 19.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.228 6.228 3 C 0.106 3.894 4 C -0.185 4.185 5 C -0.038 4.038 6 C -0.155 4.155 7 C 0.345 3.655 8 O -0.414 6.414 9 O -0.253 6.253 10 C 0.137 3.863 11 H 0.065 0.935 12 C -0.227 4.227 13 C -0.563 4.563 14 H 0.105 0.895 15 C -0.123 4.123 16 N -0.526 5.526 17 Si 0.708 3.292 18 H -0.200 1.200 19 H -0.217 1.217 20 H -0.187 1.187 21 C -0.037 4.037 22 C -0.242 4.242 23 H 0.118 0.882 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.155 0.845 27 H 0.161 0.839 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.164 0.836 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.335 -18.705 -4.126 19.443 hybrid contribution 0.653 0.641 -0.382 0.991 sum -2.682 -18.065 -4.508 18.811 Atomic orbital electron populations 1.23119 0.78058 1.04037 1.01815 1.86025 1.21731 1.27042 1.88042 1.19341 0.92438 0.84162 0.93491 1.20312 0.91185 0.98457 1.08582 1.21093 1.00726 0.89827 0.92148 1.19271 0.93853 0.91242 1.11167 1.20989 0.85731 0.85767 0.72993 1.90760 1.15177 1.88354 1.47092 1.86557 1.41503 1.15257 1.81985 1.20942 0.93846 0.77727 0.93749 0.93536 1.22525 1.01306 0.99999 0.98884 1.20778 1.06281 0.92737 1.36455 0.89488 1.24723 0.97274 0.95659 0.94667 1.69834 1.37712 1.03450 1.41572 0.86967 0.84739 0.78741 0.78728 1.19982 1.21674 1.18661 1.21399 0.93512 0.98089 0.90678 1.21230 1.00404 0.91932 1.10636 0.88173 0.92262 0.92321 0.84490 0.83850 0.92524 0.94356 0.91772 0.92059 0.83604 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.29 10.48 -18.83 -0.20 -3.49 16 3 C 0.15 1.79 6.70 -39.01 -0.26 1.53 16 4 C -0.17 -2.00 9.97 -39.50 -0.39 -2.39 16 5 C -0.02 -0.28 9.58 -39.20 -0.38 -0.65 16 6 C -0.15 -2.54 5.87 -104.97 -0.62 -3.15 16 7 C 0.50 10.42 7.86 34.49 0.27 10.70 16 8 O -0.52 -11.95 15.60 -19.26 -0.30 -12.25 16 9 O -0.34 -7.80 9.11 -40.64 -0.37 -8.17 16 10 C 0.19 4.88 2.16 -27.88 -0.06 4.82 16 11 H 0.05 1.26 6.22 -51.93 -0.32 0.93 16 12 C -0.17 -3.92 9.03 37.16 0.34 -3.58 16 13 C -0.52 -15.08 9.48 -34.44 -0.33 -15.41 16 14 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 15 C 0.08 2.30 5.45 -17.82 -0.10 2.20 16 16 N -0.89 -26.74 13.96 55.43 0.77 -25.96 16 17 Si 0.88 21.74 24.37 -169.99 -4.14 17.60 16 18 H -0.27 -6.47 6.87 56.52 0.39 -6.08 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 21 C -0.02 -0.26 9.61 -39.20 -0.38 -0.64 16 22 C -0.22 -2.62 9.01 -39.50 -0.36 -2.97 16 23 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.35 7.65 -51.93 -0.40 -0.05 16 25 H 0.06 0.34 7.65 -51.93 -0.40 -0.06 16 26 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 27 H 0.14 1.91 7.64 -52.49 -0.40 1.51 16 28 H 0.06 1.32 3.27 -51.93 -0.17 1.15 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.15 2.07 7.60 -52.49 -0.40 1.67 16 33 H 0.13 1.21 6.27 -52.49 -0.33 0.88 16 LS Contribution 283.71 15.07 4.28 4.28 Total: -1.00 -32.45 283.71 -4.94 -37.39 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -3.71 Total: -0.99 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -1.27 Total: -8.40 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.77 Total: -25.96 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.87 Total: -23.91 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.14 Total: 17.60 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.45 -4.94 -37.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113695087.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.993 kcal (2) G-P(sol) polarization free energy of solvation -32.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds