Wall clock time and date at job start Mon Mar 30 2020 06:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35697 * 116.99859 * 2 1 4 4 C 1.39021 * 119.90398 * 180.02562 * 3 2 1 5 5 C 1.37673 * 120.09164 * 180.02562 * 4 3 2 6 6 C 1.39799 * 119.90577 * 359.97438 * 5 4 3 7 7 C 1.47473 * 120.09032 * 179.97438 * 6 5 4 8 8 O 1.21498 * 119.99794 * 359.97438 * 7 6 5 9 9 O 1.34744 * 119.99928 * 179.97438 * 7 6 5 10 10 C 1.45200 * 117.00257 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.46884 * 29.99778 * 10 9 7 12 12 C 1.53000 * 109.46973 * 270.00095 * 10 9 7 13 13 C 1.50696 * 109.47030 * 149.99519 * 10 9 7 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 10 9 15 15 C 1.37885 * 119.99717 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 10 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.39789 * 119.81417 * 0.24842 * 6 5 4 22 22 C 1.37672 * 119.90762 * 359.51428 * 21 6 5 23 23 H 1.08995 * 109.47325 * 59.99555 * 1 2 3 24 24 H 1.08997 * 109.47455 * 180.02562 * 1 2 3 25 25 H 1.09010 * 109.46807 * 300.00145 * 1 2 3 26 26 H 1.07995 * 119.95322 * 0.02562 * 4 3 2 27 27 H 1.08000 * 120.04695 * 179.97438 * 5 4 3 28 28 H 1.08996 * 109.47024 * 59.99721 * 12 10 9 29 29 H 1.08998 * 109.46637 * 179.97438 * 12 10 9 30 30 H 1.08997 * 109.46749 * 299.99578 * 12 10 9 31 31 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 32 32 H 1.08002 * 120.04303 * 179.72592 * 21 6 5 33 33 H 1.07999 * 119.95892 * 180.20317 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4335 1.2796 -0.0005 5 6 4.0625 2.5042 0.0000 6 6 3.3030 3.6779 0.0005 7 6 3.9725 4.9918 0.0017 8 8 5.1859 5.0553 0.0026 9 8 3.2387 6.1219 0.0017 10 6 3.9647 7.3794 0.0034 11 1 4.9177 7.2494 -0.5094 12 6 4.2180 7.8200 1.4465 13 6 3.1511 8.4301 -0.7072 14 1 2.1848 8.1781 -1.1187 15 6 3.6403 9.7131 -0.8322 16 7 2.9300 10.6303 -1.4519 17 14 5.3119 10.1487 -0.1212 18 1 5.1481 10.6136 1.2796 19 1 6.1878 8.9498 -0.1457 20 1 5.9285 11.2289 -0.9324 21 6 1.9071 3.6024 0.0058 22 6 1.2861 2.3738 0.0003 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 4.0194 0.3724 -0.0014 27 1 5.1412 2.5581 0.0000 28 1 4.8065 7.0600 1.9604 29 1 4.7634 8.7637 1.4478 30 1 3.2650 7.9500 1.9593 31 1 3.2741 11.5330 -1.5395 32 1 1.3168 4.5068 0.0107 33 1 0.2077 2.3145 0.0010 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113695089.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:14 Heat of formation + Delta-G solvation = -115.397881 kcal Electronic energy + Delta-G solvation = -17638.118504 eV Core-core repulsion = 14628.852710 eV Total energy + Delta-G solvation = -3009.265793 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.64123 -40.83158 -38.45276 -37.49490 -35.30082 -32.88250 -32.21080 -31.39489 -28.37001 -27.36601 -25.27762 -23.84542 -22.91446 -21.47841 -19.55169 -19.08158 -18.52451 -17.91727 -17.18872 -16.85000 -16.67022 -16.48044 -15.69554 -15.13124 -14.82231 -14.59059 -14.53440 -14.28640 -13.96576 -13.82465 -13.46038 -13.35288 -12.87030 -12.81230 -12.24904 -12.06575 -11.88179 -11.77769 -11.68702 -11.43824 -11.23607 -10.84193 -10.17064 -9.39576 -8.45426 -6.54367 -0.30326 0.27017 1.23417 1.31346 1.40982 1.53521 1.87362 2.19538 2.24520 2.71173 2.87439 3.67450 3.75073 3.82183 4.12603 4.22821 4.29093 4.39117 4.43404 4.44020 4.49654 4.54738 4.71507 4.77787 4.96010 5.01853 5.16387 5.19401 5.30616 5.34580 5.53040 5.60789 6.12193 6.28798 6.49113 6.84377 7.10509 8.70492 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.044875 B = 0.004673 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.802422 B = 5991.038542 C = 6403.281217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.320 6.320 3 C 0.163 3.837 4 C -0.163 4.163 5 C -0.019 4.019 6 C -0.185 4.185 7 C 0.497 3.503 8 O -0.550 6.550 9 O -0.348 6.348 10 C 0.192 3.808 11 H 0.030 0.970 12 C -0.164 4.164 13 C -0.540 4.540 14 H 0.048 0.952 15 C 0.032 3.968 16 N -0.929 5.929 17 Si 0.940 3.060 18 H -0.249 1.249 19 H -0.259 1.259 20 H -0.282 1.282 21 C -0.024 4.024 22 C -0.216 4.216 23 H 0.068 0.932 24 H 0.124 0.876 25 H 0.069 0.931 26 H 0.163 0.837 27 H 0.145 0.855 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.276 0.724 32 H 0.139 0.861 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.736 -20.865 5.216 21.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.233 6.233 3 C 0.117 3.883 4 C -0.182 4.182 5 C -0.037 4.037 6 C -0.187 4.187 7 C 0.344 3.656 8 O -0.443 6.443 9 O -0.264 6.264 10 C 0.138 3.862 11 H 0.048 0.952 12 C -0.221 4.221 13 C -0.578 4.578 14 H 0.067 0.933 15 C -0.168 4.168 16 N -0.567 5.567 17 Si 0.765 3.235 18 H -0.174 1.174 19 H -0.183 1.183 20 H -0.208 1.208 21 C -0.042 4.042 22 C -0.234 4.234 23 H 0.086 0.914 24 H 0.143 0.857 25 H 0.088 0.912 26 H 0.181 0.819 27 H 0.163 0.837 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.156 0.844 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.360 -20.807 5.157 21.699 hybrid contribution 0.468 1.063 -0.028 1.161 sum -2.892 -19.745 5.129 20.604 Atomic orbital electron populations 1.23491 0.75819 1.06122 1.02787 1.86042 1.23994 1.25984 1.87253 1.19479 0.92569 0.84791 0.91511 1.20547 0.91762 0.98406 1.07436 1.21138 1.00802 0.89750 0.92011 1.19157 0.94871 0.89430 1.15199 1.21769 0.85660 0.86298 0.71824 1.90723 1.16254 1.88630 1.48738 1.86543 1.41774 1.15407 1.82662 1.20667 0.92423 0.78220 0.94882 0.95186 1.22410 1.02104 1.00462 0.97081 1.20932 1.05379 0.94127 1.37324 0.93349 1.25543 1.01195 0.95284 0.94759 1.69953 1.39872 1.03984 1.42910 0.85990 0.79667 0.78632 0.79250 1.17442 1.18349 1.20844 1.21388 0.92627 0.99119 0.91058 1.21455 1.01932 0.90732 1.09315 0.91366 0.85740 0.91212 0.81924 0.83743 0.92515 0.92437 0.91000 0.91476 0.84351 0.81757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.32 -5.49 10.48 -90.17 -0.95 -6.44 16 3 C 0.16 3.38 6.70 22.64 0.15 3.53 16 4 C -0.16 -3.51 9.97 22.32 0.22 -3.29 16 5 C -0.02 -0.51 9.58 22.51 0.22 -0.29 16 6 C -0.19 -6.11 5.87 -20.09 -0.12 -6.23 16 7 C 0.50 21.20 7.86 70.26 0.55 21.75 16 8 O -0.55 -25.67 15.60 19.84 0.31 -25.36 16 9 O -0.35 -16.60 9.11 -56.54 -0.51 -17.12 16 10 C 0.19 10.00 2.16 29.85 0.06 10.07 16 11 H 0.03 1.66 6.21 -2.38 -0.01 1.65 16 12 C -0.16 -7.40 9.03 71.98 0.65 -6.75 16 13 C -0.54 -32.10 9.48 25.60 0.24 -31.86 16 14 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 15 C 0.03 1.88 5.45 84.66 0.46 2.34 16 16 N -0.93 -57.04 13.96 21.45 0.30 -56.74 16 17 Si 0.94 44.54 24.37 68.60 1.67 46.22 16 18 H -0.25 -10.85 6.87 99.48 0.68 -10.17 16 19 H -0.26 -12.11 6.53 99.48 0.65 -11.46 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 21 C -0.02 -0.66 9.61 22.51 0.22 -0.44 16 22 C -0.22 -4.55 9.01 22.32 0.20 -4.34 16 23 H 0.07 0.55 7.65 -2.39 -0.02 0.53 16 24 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.07 0.53 7.65 -2.38 -0.02 0.51 16 26 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 27 H 0.14 3.80 7.64 -2.91 -0.02 3.77 16 28 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.06 2.57 3.28 -2.39 -0.01 2.56 16 30 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 32 H 0.14 4.01 7.60 -2.91 -0.02 3.99 16 33 H 0.17 2.39 6.27 -2.91 -0.02 2.38 16 Total: -1.00 -71.54 283.71 5.83 -65.71 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 1.04 Total: 8.03 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: 3.97 Total: -14.30 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.30 Total: -56.74 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -1.15 Total: -48.92 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.67 Total: 46.22 kcal Total: -71.54 5.83 -65.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113695089.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.689 kcal (2) G-P(sol) polarization free energy of solvation -71.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds