Wall clock time and date at job start Mon Mar 30 2020 06:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35905 * 117.00088 * 2 1 4 4 C 1.38856 * 119.98551 * 359.73660 * 3 2 1 5 5 C 1.38255 * 120.25124 * 179.71851 * 4 3 2 6 6 C 1.37984 * 120.21202 * 0.54799 * 5 4 3 7 7 C 1.39614 * 119.96276 * 359.72721 * 6 5 4 8 8 C 1.47738 * 120.12481 * 179.97438 * 7 6 5 9 9 O 1.21473 * 120.00021 * 180.02562 * 8 7 6 10 10 O 1.34708 * 119.99964 * 0.02562 * 8 7 6 11 11 C 1.45203 * 116.99879 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47226 * 29.99645 * 11 10 8 13 13 C 1.53000 * 109.47188 * 269.99904 * 11 10 8 14 14 C 1.50696 * 109.47292 * 149.99826 * 11 10 8 15 15 H 1.08006 * 119.99615 * 34.99860 * 14 11 10 16 16 C 1.37876 * 120.00371 * 214.99523 * 14 11 10 17 17 N 1.31513 * 120.00075 * 184.91176 * 16 14 11 18 18 Si 1.86803 * 119.99663 * 4.91596 * 16 14 11 19 19 H 1.48502 * 109.46993 * 84.83098 * 18 16 14 20 20 H 1.48504 * 109.46908 * 204.83212 * 18 16 14 21 21 H 1.48503 * 109.47243 * 324.83384 * 18 16 14 22 22 C 1.38443 * 119.98284 * 179.97438 * 3 2 1 23 23 H 1.08997 * 109.47180 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46462 * 299.99430 * 1 2 3 25 25 H 1.08998 * 109.46802 * 59.99269 * 1 2 3 26 26 H 1.08007 * 119.87393 * 359.97438 * 4 3 2 27 27 H 1.08004 * 119.88923 * 180.24924 * 5 4 3 28 28 H 1.07998 * 120.01822 * 179.69840 * 6 5 4 29 29 H 1.09005 * 109.46934 * 295.03667 * 13 11 10 30 30 H 1.09003 * 109.46922 * 55.03025 * 13 11 10 31 31 H 1.08998 * 109.47528 * 175.03389 * 13 11 10 32 32 H 0.97002 * 119.99701 * 179.97438 * 17 16 14 33 33 H 1.08004 * 120.10974 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2895 2.3753 -0.0055 5 6 1.9114 3.6100 0.0003 6 6 3.2887 3.6937 0.0003 7 6 4.0581 2.5287 0.0001 8 6 5.5330 2.6142 -0.0005 9 8 6.2003 1.5991 -0.0012 10 8 6.1380 3.8178 -0.0004 11 6 7.5900 3.8258 -0.0016 12 1 7.9578 2.9381 -0.5161 13 6 8.1012 3.8279 1.4405 14 6 8.0849 5.0594 -0.7118 15 1 7.5375 5.9867 -0.6285 16 6 9.2366 5.0043 -1.4678 17 7 9.7217 6.1008 -2.0081 18 14 10.1080 3.3720 -1.7246 19 1 9.4886 2.6548 -2.8680 20 1 11.5439 3.6175 -2.0134 21 1 9.9842 2.5461 -0.4966 22 6 3.4286 1.2829 0.0005 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 0.2111 2.3161 -0.0102 27 1 1.3173 4.5119 0.0000 28 1 3.7713 4.6599 -0.0001 29 1 7.8075 4.7572 1.9287 30 1 7.6721 2.9831 1.9793 31 1 9.1880 3.7449 1.4409 32 1 10.5321 6.0620 -2.5396 33 1 4.0183 0.3781 0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113696356.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:18 Heat of formation + Delta-G solvation = -101.229215 kcal Electronic energy + Delta-G solvation = -17687.225636 eV Core-core repulsion = 14678.574242 eV Total energy + Delta-G solvation = -3008.651394 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.36892 -39.39479 -37.28521 -35.76897 -33.09065 -31.38471 -30.77795 -30.03520 -27.48740 -25.42641 -24.26408 -22.42241 -21.29779 -19.82819 -18.47575 -17.08049 -16.69563 -16.20985 -15.93413 -15.70921 -15.59490 -15.10012 -14.31660 -13.86659 -13.62140 -12.96642 -12.88705 -12.57165 -12.48275 -12.25513 -11.82942 -11.75850 -11.22882 -11.16177 -11.01180 -10.96562 -10.70561 -10.06502 -9.78539 -9.50338 -9.14048 -9.08799 -8.72379 -8.32912 -6.28291 -4.32401 0.79654 1.37479 2.95167 2.97091 3.22247 3.29727 3.35783 3.61904 3.90705 4.26440 4.63426 4.76737 4.89024 4.89922 5.03180 5.16763 5.22302 5.29908 5.37319 5.66087 5.84920 6.11834 6.17579 6.32965 6.39926 6.44677 6.51279 6.57464 6.70952 7.14466 7.22564 7.33302 7.50009 8.21638 8.60312 8.81606 9.30836 10.82899 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.039117 B = 0.004953 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.632013 B = 5651.396376 C = 5923.379026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.110 3.890 4 C -0.183 4.183 5 C -0.095 4.095 6 C -0.096 4.096 7 C -0.075 4.075 8 C 0.495 3.505 9 O -0.519 6.519 10 O -0.340 6.340 11 C 0.181 3.819 12 H 0.048 0.952 13 C -0.153 4.153 14 C -0.518 4.518 15 H 0.086 0.914 16 C 0.083 3.917 17 N -0.881 5.881 18 Si 0.869 3.131 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.260 1.260 22 C -0.093 4.093 23 H 0.099 0.901 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.130 0.870 27 H 0.133 0.867 28 H 0.146 0.854 29 H 0.058 0.942 30 H 0.030 0.970 31 H 0.062 0.938 32 H 0.270 0.730 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.789 -8.007 4.348 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.065 3.935 4 C -0.202 4.202 5 C -0.113 4.113 6 C -0.114 4.114 7 C -0.077 4.077 8 C 0.339 3.661 9 O -0.411 6.411 10 O -0.256 6.256 11 C 0.129 3.871 12 H 0.066 0.934 13 C -0.211 4.211 14 C -0.555 4.555 15 H 0.104 0.896 16 C -0.122 4.122 17 N -0.518 5.518 18 Si 0.695 3.305 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.185 1.185 22 C -0.112 4.112 23 H 0.117 0.883 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.148 0.852 27 H 0.151 0.849 28 H 0.163 0.837 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -17.297 -8.366 4.231 19.675 hybrid contribution 0.360 -0.715 -0.261 0.842 sum -16.937 -9.081 3.970 19.624 Atomic orbital electron populations 1.23052 0.78463 1.03922 1.01305 1.86089 1.21258 1.26616 1.89055 1.18738 0.91821 0.84388 0.98526 1.21428 1.00097 0.92408 1.06261 1.20944 0.94412 0.97138 0.98810 1.21538 0.93525 0.98849 0.97530 1.19160 0.90931 0.93568 1.04001 1.21067 0.88412 0.83322 0.73254 1.90757 1.66549 1.37075 1.46675 1.86722 1.27685 1.29723 1.81451 1.21052 0.72252 0.99058 0.94769 0.93430 1.22241 1.01087 1.00135 0.97622 1.20789 1.09222 0.94983 1.30556 0.89571 1.24904 0.96700 0.96672 0.93889 1.69852 1.21913 1.27338 1.32662 0.86967 0.79180 0.84318 0.80052 1.19513 1.20673 1.18451 1.20460 0.91411 0.98132 1.01209 0.88262 0.92654 0.92635 0.85189 0.84941 0.83667 0.92312 0.95068 0.91902 0.91947 0.83835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.77 10.49 -19.44 -0.20 -3.98 16 3 C 0.11 1.45 6.68 -39.28 -0.26 1.19 16 4 C -0.18 -2.01 9.03 -39.35 -0.36 -2.37 16 5 C -0.10 -1.09 10.02 -39.67 -0.40 -1.49 16 6 C -0.10 -1.41 9.61 -39.16 -0.38 -1.78 16 7 C -0.08 -1.30 5.87 -105.00 -0.62 -1.92 16 8 C 0.50 10.63 7.87 34.61 0.27 10.90 16 9 O -0.52 -12.25 15.60 -19.25 -0.30 -12.55 16 10 O -0.34 -7.97 9.11 -40.51 -0.37 -8.34 16 11 C 0.18 4.62 2.22 -27.88 -0.06 4.56 16 12 H 0.05 1.27 4.31 -51.93 -0.22 1.05 16 13 C -0.15 -3.45 9.53 37.16 0.35 -3.09 16 14 C -0.52 -14.74 9.24 -34.44 -0.32 -15.06 16 15 H 0.09 2.62 8.06 -52.48 -0.42 2.19 16 16 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 17 N -0.88 -26.21 13.96 55.43 0.77 -25.43 16 18 Si 0.87 21.60 26.99 -169.99 -4.59 17.01 16 19 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.26 -6.32 6.82 56.52 0.39 -5.94 16 22 C -0.09 -1.46 9.53 -39.00 -0.37 -1.84 16 23 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.33 7.67 -51.93 -0.40 -0.07 16 25 H 0.06 0.33 7.64 -51.93 -0.40 -0.06 16 26 H 0.13 1.01 6.28 -52.48 -0.33 0.68 16 27 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 28 H 0.15 2.12 7.61 -52.49 -0.40 1.72 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.14 2.30 7.65 -52.48 -0.40 1.90 16 LS Contribution 290.25 15.07 4.37 4.37 Total: -1.00 -32.21 290.25 -5.39 -37.60 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -3.84 Total: -1.24 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -1.24 Total: -7.44 kcal Atomic # 7 Polarization: -26.21 SS G_CDS: 0.77 Total: -25.43 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.87 Total: -24.87 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.59 Total: 17.01 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.21 -5.39 -37.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113696356.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.628 kcal (2) G-P(sol) polarization free energy of solvation -32.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds