Wall clock time and date at job start Mon Mar 30 2020 06:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35905 * 117.00088 * 2 1 4 4 C 1.38856 * 119.98551 * 359.73660 * 3 2 1 5 5 C 1.38255 * 120.25124 * 179.71851 * 4 3 2 6 6 C 1.37984 * 120.21202 * 0.54799 * 5 4 3 7 7 C 1.39614 * 119.96276 * 359.72721 * 6 5 4 8 8 C 1.47738 * 120.12481 * 179.97438 * 7 6 5 9 9 O 1.21473 * 120.00021 * 180.02562 * 8 7 6 10 10 O 1.34708 * 119.99964 * 0.02562 * 8 7 6 11 11 C 1.45203 * 116.99879 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47226 * 29.99645 * 11 10 8 13 13 C 1.53000 * 109.47188 * 269.99904 * 11 10 8 14 14 C 1.50696 * 109.47292 * 149.99826 * 11 10 8 15 15 H 1.08006 * 119.99615 * 34.99860 * 14 11 10 16 16 C 1.37876 * 120.00371 * 214.99523 * 14 11 10 17 17 N 1.31513 * 120.00075 * 184.91176 * 16 14 11 18 18 Si 1.86803 * 119.99663 * 4.91596 * 16 14 11 19 19 H 1.48502 * 109.46993 * 84.83098 * 18 16 14 20 20 H 1.48504 * 109.46908 * 204.83212 * 18 16 14 21 21 H 1.48503 * 109.47243 * 324.83384 * 18 16 14 22 22 C 1.38443 * 119.98284 * 179.97438 * 3 2 1 23 23 H 1.08997 * 109.47180 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46462 * 299.99430 * 1 2 3 25 25 H 1.08998 * 109.46802 * 59.99269 * 1 2 3 26 26 H 1.08007 * 119.87393 * 359.97438 * 4 3 2 27 27 H 1.08004 * 119.88923 * 180.24924 * 5 4 3 28 28 H 1.07998 * 120.01822 * 179.69840 * 6 5 4 29 29 H 1.09005 * 109.46934 * 295.03667 * 13 11 10 30 30 H 1.09003 * 109.46922 * 55.03025 * 13 11 10 31 31 H 1.08998 * 109.47528 * 175.03389 * 13 11 10 32 32 H 0.97002 * 119.99701 * 179.97438 * 17 16 14 33 33 H 1.08004 * 120.10974 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2895 2.3753 -0.0055 5 6 1.9114 3.6100 0.0003 6 6 3.2887 3.6937 0.0003 7 6 4.0581 2.5287 0.0001 8 6 5.5330 2.6142 -0.0005 9 8 6.2003 1.5991 -0.0012 10 8 6.1380 3.8178 -0.0004 11 6 7.5900 3.8258 -0.0016 12 1 7.9578 2.9381 -0.5161 13 6 8.1012 3.8279 1.4405 14 6 8.0849 5.0594 -0.7118 15 1 7.5375 5.9867 -0.6285 16 6 9.2366 5.0043 -1.4678 17 7 9.7217 6.1008 -2.0081 18 14 10.1080 3.3720 -1.7246 19 1 9.4886 2.6548 -2.8680 20 1 11.5439 3.6175 -2.0134 21 1 9.9842 2.5461 -0.4966 22 6 3.4286 1.2829 0.0005 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 0.2111 2.3161 -0.0102 27 1 1.3173 4.5119 0.0000 28 1 3.7713 4.6599 -0.0001 29 1 7.8075 4.7572 1.9287 30 1 7.6721 2.9831 1.9793 31 1 9.1880 3.7449 1.4409 32 1 10.5321 6.0620 -2.5396 33 1 4.0183 0.3781 0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113696356.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:18 Heat of formation + Delta-G solvation = -121.567136 kcal Electronic energy + Delta-G solvation = -17688.107555 eV Core-core repulsion = 14678.574242 eV Total energy + Delta-G solvation = -3009.533312 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.65817 -40.77327 -38.37866 -37.54484 -35.20057 -32.87165 -32.20267 -31.26165 -28.16150 -27.49229 -25.66457 -23.45875 -22.93189 -21.45544 -19.90712 -18.92624 -18.33702 -17.29916 -17.10102 -16.95567 -16.74426 -16.59333 -16.16784 -15.04480 -14.76187 -14.64773 -14.50661 -14.31914 -13.86177 -13.44317 -13.22120 -13.03935 -12.94242 -12.79851 -12.61202 -12.04898 -12.03987 -11.94300 -11.58525 -11.43772 -11.21320 -10.89948 -10.17830 -9.33109 -8.48834 -6.58524 -0.40232 0.33823 1.23657 1.28069 1.38324 1.51841 1.71959 2.18398 2.41532 2.71619 2.89511 3.65997 3.75294 4.01441 4.14650 4.17693 4.26847 4.42412 4.45267 4.45476 4.55649 4.61520 4.75807 4.83192 4.85671 5.13828 5.27822 5.28976 5.31737 5.36587 5.53683 5.61161 6.11291 6.36573 6.49765 6.81335 7.09089 8.66303 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.039117 B = 0.004953 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.632013 B = 5651.396376 C = 5923.379026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.336 6.336 3 C 0.112 3.888 4 C -0.162 4.162 5 C -0.081 4.081 6 C -0.105 4.105 7 C -0.103 4.103 8 C 0.492 3.508 9 O -0.549 6.549 10 O -0.349 6.349 11 C 0.181 3.819 12 H 0.036 0.964 13 C -0.147 4.147 14 C -0.531 4.531 15 H 0.052 0.948 16 C 0.038 3.962 17 N -0.920 5.920 18 Si 0.925 3.075 19 H -0.271 1.271 20 H -0.263 1.263 21 H -0.252 1.252 22 C -0.112 4.112 23 H 0.118 0.882 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.174 0.826 27 H 0.173 0.827 28 H 0.138 0.862 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.277 0.723 33 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.430 -8.980 4.768 22.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.250 6.250 3 C 0.067 3.933 4 C -0.180 4.180 5 C -0.098 4.098 6 C -0.124 4.124 7 C -0.104 4.104 8 C 0.339 3.661 9 O -0.442 6.442 10 O -0.265 6.265 11 C 0.127 3.873 12 H 0.054 0.946 13 C -0.205 4.205 14 C -0.568 4.568 15 H 0.070 0.930 16 C -0.163 4.163 17 N -0.558 5.558 18 Si 0.748 3.252 19 H -0.196 1.196 20 H -0.188 1.188 21 H -0.176 1.176 22 C -0.131 4.131 23 H 0.136 0.864 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.191 0.809 27 H 0.190 0.810 28 H 0.156 0.844 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.961 -9.341 4.661 22.526 hybrid contribution 0.930 -0.423 -0.382 1.091 sum -19.031 -9.764 4.278 21.814 Atomic orbital electron populations 1.23454 0.75697 1.05902 1.02873 1.86082 1.24081 1.26089 1.88723 1.18759 0.90965 0.85865 0.97696 1.21902 1.02097 0.91014 1.02965 1.21353 0.92956 0.99056 0.96475 1.21610 0.95145 0.97510 0.98100 1.18941 0.88179 0.95384 1.07870 1.21830 0.90261 0.82040 0.71987 1.90719 1.67624 1.37567 1.48299 1.86672 1.26531 1.31188 1.82085 1.20900 0.73432 0.96916 0.96009 0.94607 1.22149 1.01337 1.01147 0.95853 1.20894 1.09475 0.95020 1.31401 0.92961 1.25609 0.97303 0.99890 0.93496 1.69944 1.22810 1.29335 1.33675 0.86075 0.78844 0.80177 0.80115 1.19613 1.18784 1.17586 1.20373 0.93000 0.96874 1.02806 0.86413 0.90886 0.91034 0.80852 0.80957 0.84397 0.91624 0.93613 0.91432 0.91349 0.85487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 16 2 O -0.34 -7.17 10.49 -92.48 -0.97 -8.14 16 3 C 0.11 2.71 6.68 22.47 0.15 2.86 16 4 C -0.16 -2.84 9.03 22.42 0.20 -2.63 16 5 C -0.08 -1.55 10.02 22.21 0.22 -1.33 16 6 C -0.11 -2.97 9.61 22.54 0.22 -2.76 16 7 C -0.10 -3.58 5.87 -20.11 -0.12 -3.70 16 8 C 0.49 21.81 7.87 70.33 0.55 22.36 16 9 O -0.55 -26.76 15.60 19.92 0.31 -26.45 16 10 O -0.35 -16.88 9.11 -56.18 -0.51 -17.39 16 11 C 0.18 9.38 2.22 29.85 0.07 9.45 16 12 H 0.04 1.94 4.31 -2.39 -0.01 1.93 16 13 C -0.15 -6.63 9.53 71.98 0.69 -5.94 16 14 C -0.53 -31.15 9.24 25.60 0.24 -30.91 16 15 H 0.05 3.34 8.06 -2.91 -0.02 3.31 16 16 C 0.04 2.23 5.47 84.65 0.46 2.70 16 17 N -0.92 -55.81 13.96 21.45 0.30 -55.51 16 18 Si 0.93 44.80 26.99 68.60 1.85 46.65 16 19 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 20 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.25 -11.79 6.82 99.48 0.68 -11.11 16 22 C -0.11 -3.51 9.53 22.64 0.22 -3.29 16 23 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.07 0.50 7.67 -2.39 -0.02 0.48 16 25 H 0.07 0.52 7.64 -2.39 -0.02 0.50 16 26 H 0.17 1.57 6.28 -2.91 -0.02 1.55 16 27 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 28 H 0.14 4.03 7.61 -2.91 -0.02 4.01 16 29 H 0.06 2.81 8.14 -2.38 -0.02 2.79 16 30 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 32 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 33 H 0.13 4.28 7.65 -2.91 -0.02 4.26 16 Total: -1.00 -72.50 290.25 6.08 -66.42 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: 1.09 Total: 6.35 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 4.01 Total: -11.94 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.30 Total: -55.51 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: -1.17 Total: -51.97 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.85 Total: 46.65 kcal Total: -72.50 6.08 -66.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113696356.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.144 kcal (2) G-P(sol) polarization free energy of solvation -72.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds