Wall clock time and date at job start Mon Mar 30 2020 05:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30518 * 1 3 3 Si 1.86803 * 120.00205 * 2 1 4 4 H 1.48502 * 109.46929 * 270.00195 * 3 2 1 5 5 H 1.48503 * 109.46911 * 30.00027 * 3 2 1 6 6 H 1.48495 * 109.47246 * 150.00332 * 3 2 1 7 7 C 1.40465 * 120.00032 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00104 * 179.97438 * 7 2 1 9 9 C 1.41028 * 119.99455 * 359.97438 * 7 2 1 10 10 O 1.21426 * 120.00365 * 0.02562 * 9 7 2 11 11 C 1.50702 * 119.99573 * 180.27858 * 9 7 2 12 12 C 1.53007 * 109.46873 * 285.81623 * 11 9 7 13 13 C 1.53004 * 109.46718 * 299.99687 * 12 11 9 14 14 C 1.52998 * 109.47175 * 300.00160 * 13 12 11 15 15 C 1.53004 * 109.47175 * 179.97438 * 14 13 12 16 16 F 1.39903 * 109.46801 * 300.00432 * 15 14 13 17 17 F 1.39897 * 109.46853 * 60.00040 * 15 14 13 18 18 F 1.39893 * 109.47146 * 180.02562 * 15 14 13 19 19 C 1.53000 * 109.47054 * 60.00573 * 14 13 12 20 20 C 1.52998 * 109.47345 * 165.81264 * 11 9 7 21 21 H 0.97007 * 120.00120 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.47060 * 45.81214 * 11 9 7 23 23 H 1.08996 * 109.47449 * 59.99735 * 12 11 9 24 24 H 1.09003 * 109.46991 * 180.02562 * 12 11 9 25 25 H 1.09000 * 109.46854 * 180.02562 * 13 12 11 26 26 H 1.09003 * 109.46973 * 60.00499 * 13 12 11 27 27 H 1.08994 * 109.47223 * 300.00182 * 14 13 12 28 28 H 1.09003 * 109.46786 * 180.02562 * 19 14 13 29 29 H 1.08994 * 109.47425 * 59.99732 * 19 14 13 30 30 H 1.08994 * 109.47223 * 179.97438 * 20 11 9 31 31 H 1.09000 * 109.47202 * 299.99992 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 2.4867 2.0464 -1.4001 5 1 1.4367 2.6527 0.7001 6 1 3.5368 1.4401 0.6999 7 6 2.0075 -1.2165 -0.0005 8 1 3.0875 -1.2165 -0.0010 9 6 1.3023 -2.4377 -0.0005 10 8 0.0880 -2.4377 -0.0005 11 6 2.0557 -3.7429 0.0052 12 6 2.6565 -3.9910 -1.3799 13 6 1.5347 -4.0543 -2.4184 14 6 0.5772 -5.1944 -2.0660 15 6 -0.5450 -5.2574 -3.1042 16 9 -1.2443 -4.0456 -3.1089 17 9 0.0039 -5.4840 -4.3709 18 9 -1.4207 -6.2995 -2.7816 19 6 -0.0235 -4.9462 -0.6810 20 6 1.0983 -4.8830 0.3576 21 1 -0.4851 0.8401 0.0004 22 1 2.8549 -3.6977 0.7451 23 1 3.3386 -3.1787 -1.6310 24 1 3.2011 -4.9352 -1.3759 25 1 1.9626 -4.2315 -3.4051 26 1 0.9897 -3.1103 -2.4226 27 1 1.1222 -6.1384 -2.0619 28 1 -0.7053 -5.7588 -0.4298 29 1 -0.5685 -4.0023 -0.6851 30 1 1.6432 -5.8270 0.3613 31 1 0.6703 -4.7062 1.3444 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127075441.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:35 Heat of formation + Delta-G solvation = -221.377090 kcal Electronic energy + Delta-G solvation = -19615.211585 eV Core-core repulsion = 16059.493448 eV Total energy + Delta-G solvation = -3555.718137 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.092 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.67786 -47.21832 -47.07106 -38.83955 -35.52466 -32.63968 -31.30255 -30.16753 -27.05523 -25.06682 -22.15174 -22.04402 -20.38892 -18.58996 -17.83574 -17.74764 -17.03841 -16.10607 -15.06776 -14.81151 -14.19530 -13.99112 -13.84186 -13.60484 -13.42625 -13.30723 -13.27033 -12.91618 -12.73072 -12.08569 -11.90427 -11.61562 -11.44285 -11.20573 -11.04796 -10.86191 -10.52305 -10.33395 -10.12838 -10.01432 -9.57334 -9.46354 -8.89632 -7.20894 -6.17389 -4.88821 3.04275 3.13869 3.16481 3.22376 4.02936 4.21649 4.27095 4.47381 4.53539 5.24783 5.28009 5.44504 5.61051 5.77681 5.86450 5.97163 6.03694 6.07822 6.17434 6.47409 6.49353 6.72139 6.78890 6.88045 6.94972 7.02590 7.23706 7.35929 8.11063 8.84044 8.92901 10.35530 10.60086 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.030943 B = 0.007420 C = 0.007033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.675507 B = 3772.781474 C = 3980.145871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.738 5.738 2 C 0.084 3.916 3 Si 0.900 3.100 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.534 4.534 8 H 0.067 0.933 9 C 0.373 3.627 10 O -0.534 6.534 11 C -0.137 4.137 12 C -0.089 4.089 13 C -0.117 4.117 14 C -0.121 4.121 15 C 0.450 3.550 16 F -0.174 7.174 17 F -0.193 7.193 18 F -0.192 7.192 19 C -0.142 4.142 20 C -0.086 4.086 21 H 0.272 0.728 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.051 0.949 29 H 0.134 0.866 30 H 0.042 0.958 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.784 -7.598 -3.781 8.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.565 4.565 8 H 0.085 0.915 9 C 0.268 3.732 10 O -0.423 6.423 11 C -0.157 4.157 12 C -0.127 4.127 13 C -0.154 4.154 14 C -0.140 4.140 15 C 0.396 3.604 16 F -0.155 7.155 17 F -0.175 7.175 18 F -0.173 7.173 19 C -0.178 4.178 20 C -0.123 4.123 21 H 0.083 0.917 22 H 0.087 0.913 23 H 0.090 0.910 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.107 0.893 27 H 0.114 0.886 28 H 0.069 0.931 29 H 0.151 0.849 30 H 0.060 0.940 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.999 -7.558 -3.802 8.693 hybrid contribution 0.511 0.671 -0.228 0.874 sum 2.510 -6.887 -4.031 8.365 Atomic orbital electron populations 1.69937 1.07369 1.27850 1.31479 1.25986 0.94546 1.00769 0.92596 0.86486 0.80533 0.81452 0.79108 1.19527 1.20306 1.18689 1.20792 0.94772 0.91986 1.49000 0.91503 1.19323 0.88831 0.87263 0.77820 1.90219 1.15484 1.87690 1.48921 1.21759 0.98791 0.98838 0.96306 1.21241 0.96489 1.00651 0.94283 1.21589 0.96814 0.98382 0.98661 1.22438 0.93796 1.02731 0.95081 1.20859 0.84234 0.73399 0.81886 1.93217 1.80807 1.45010 1.96510 1.93121 1.85578 1.94568 1.44227 1.93122 1.72232 1.59372 1.92595 1.22158 0.99111 1.06201 0.90360 1.21164 0.95882 0.96715 0.98571 0.91686 0.91282 0.91025 0.93195 0.92065 0.89326 0.88551 0.93052 0.84898 0.93970 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.69 11.72 55.57 0.65 -20.04 16 2 C 0.08 2.21 5.50 -17.27 -0.10 2.12 16 3 Si 0.90 19.11 29.56 -169.99 -5.03 14.08 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 7 C -0.53 -14.07 9.12 -37.69 -0.34 -14.41 16 8 H 0.07 1.64 7.85 -52.49 -0.41 1.23 16 9 C 0.37 9.58 4.80 -33.25 -0.16 9.42 16 10 O -0.53 -15.32 11.75 5.43 0.06 -15.25 16 11 C -0.14 -2.80 2.88 -91.77 -0.26 -3.06 16 12 C -0.09 -1.57 5.40 -26.73 -0.14 -1.72 16 13 C -0.12 -2.11 4.74 -26.73 -0.13 -2.24 16 14 C -0.12 -2.06 2.17 -90.62 -0.20 -2.26 16 15 C 0.45 7.81 2.69 37.16 0.10 7.91 16 16 F -0.17 -3.48 16.28 2.25 0.04 -3.44 16 17 F -0.19 -3.18 16.80 2.25 0.04 -3.14 16 18 F -0.19 -3.22 16.80 2.25 0.04 -3.18 16 19 C -0.14 -2.70 4.67 -26.73 -0.12 -2.83 16 20 C -0.09 -1.60 5.21 -26.73 -0.14 -1.74 16 21 H 0.27 6.94 8.29 -40.82 -0.34 6.60 16 22 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 23 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.97 7.80 -51.93 -0.41 0.56 16 26 H 0.09 1.94 6.85 -51.93 -0.36 1.58 16 27 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.05 0.89 7.80 -51.93 -0.41 0.49 16 29 H 0.13 3.12 4.71 -51.93 -0.24 2.87 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 263.52 15.07 3.97 3.97 Total: -1.00 -28.83 263.52 -5.21 -34.04 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -3.49 Total: 1.76 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -1.49 Total: -8.80 kcal Atomic # 7 Polarization: -20.69 SS G_CDS: 0.65 Total: -20.04 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: 0.06 Total: -15.25 kcal Atomic # 9 Polarization: -9.88 SS G_CDS: 0.11 Total: -9.77 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.83 -5.21 -34.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127075441.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.336 kcal (2) G-P(sol) polarization free energy of solvation -28.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds