Wall clock time and date at job start Mon Mar 30 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30524 * 1 3 3 Si 1.86801 * 120.00059 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46780 * 300.00161 * 3 2 1 6 6 H 1.48493 * 109.47151 * 60.00065 * 3 2 1 7 7 C 1.40458 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00331 * 180.02562 * 7 2 1 9 9 C 1.41028 * 119.99848 * 359.72128 * 7 2 1 10 10 O 1.21433 * 119.99901 * 0.27333 * 9 7 2 11 11 C 1.50708 * 119.99908 * 180.27687 * 9 7 2 12 12 H 1.08996 * 109.47100 * 329.99942 * 11 9 7 13 13 C 1.53000 * 109.47069 * 90.00121 * 11 9 7 14 14 C 1.53000 * 109.47252 * 180.02562 * 13 11 9 15 15 C 1.53000 * 109.46766 * 299.99664 * 14 13 11 16 16 C 1.53000 * 109.46961 * 60.00157 * 15 14 13 17 17 H 1.09005 * 109.47055 * 59.99620 * 16 15 14 18 18 C 1.52999 * 109.47284 * 179.97438 * 16 15 14 19 19 F 1.39900 * 109.47028 * 59.99957 * 18 16 15 20 20 F 1.39900 * 109.47285 * 179.97438 * 18 16 15 21 21 F 1.39899 * 109.47283 * 300.00049 * 18 16 15 22 22 C 1.53000 * 109.47252 * 299.99545 * 16 15 14 23 23 H 0.96995 * 119.99922 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47224 * 300.00111 * 13 11 9 25 25 H 1.09004 * 109.46917 * 59.99433 * 13 11 9 26 26 H 1.08996 * 109.47043 * 59.99744 * 14 13 11 27 27 H 1.08999 * 109.46849 * 179.97438 * 14 13 11 28 28 H 1.08998 * 109.46920 * 179.97438 * 15 14 13 29 29 H 1.08992 * 109.47753 * 300.00185 * 15 14 13 30 30 H 1.08996 * 109.47043 * 300.00256 * 22 16 15 31 31 H 1.09002 * 109.47283 * 179.97438 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 3.6992 1.3464 -0.0006 5 1 1.8804 2.3964 -1.2125 6 1 1.8806 2.3964 1.2124 7 6 2.0075 -1.2164 -0.0005 8 1 3.0876 -1.2165 -0.0001 9 6 1.3024 -2.4377 0.0049 10 8 0.0881 -2.4377 0.0049 11 6 2.0559 -3.7429 0.0106 12 1 3.0083 -3.6148 -0.5038 13 6 2.3109 -4.1782 1.4550 14 6 3.0765 -5.5029 1.4609 15 6 2.2501 -6.5726 0.7442 16 6 1.9951 -6.1373 -0.7002 17 1 2.9476 -6.0088 -1.2145 18 6 1.1692 -7.2072 -1.4172 19 9 -0.0532 -7.3727 -0.7572 20 9 0.9355 -6.8089 -2.7377 21 9 1.8696 -8.4183 -1.4119 22 6 1.2295 -4.8126 -0.7061 23 1 -0.4850 0.8400 -0.0004 24 1 2.9000 -3.4162 1.9655 25 1 1.3585 -4.3062 1.9694 26 1 4.0289 -5.3744 0.9466 27 1 3.2586 -5.8127 2.4899 28 1 2.7957 -7.5162 0.7480 29 1 1.2977 -6.7011 1.2584 30 1 0.2771 -4.9411 -0.1918 31 1 1.0482 -4.5022 -1.7351 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127075940.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:34 Heat of formation + Delta-G solvation = -230.735306 kcal Electronic energy + Delta-G solvation = -19045.533784 eV Core-core repulsion = 15489.409845 eV Total energy + Delta-G solvation = -3556.123940 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.092 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.89372 -47.39854 -47.33049 -38.62098 -36.06281 -32.66274 -31.48806 -30.34996 -26.91905 -25.35622 -22.93743 -21.69598 -20.17814 -18.98191 -18.03242 -17.90547 -17.28719 -16.15212 -15.16398 -14.84104 -14.38177 -14.15501 -13.90735 -13.76601 -13.71841 -13.52902 -13.51930 -13.25851 -12.85235 -12.46908 -12.24485 -11.55857 -11.43291 -11.27878 -11.05660 -10.77701 -10.75388 -10.58902 -10.34969 -9.97858 -9.83274 -9.68651 -8.93033 -7.34562 -6.22594 -4.90229 2.99605 3.02841 3.13410 3.17640 4.00220 4.03225 4.20042 4.26309 4.30068 4.96835 5.02188 5.28114 5.34303 5.53898 5.64736 5.71985 5.80624 5.97099 6.06172 6.15007 6.28130 6.42402 6.59124 6.64079 6.83182 6.94716 7.05725 7.25916 8.08910 8.82988 8.90325 10.34723 10.58588 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.036829 B = 0.005925 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.093439 B = 4724.914090 C = 5038.476904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.083 3.917 3 Si 0.902 3.098 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.069 0.931 9 C 0.369 3.631 10 O -0.543 6.543 11 C -0.121 4.121 12 H 0.068 0.932 13 C -0.103 4.103 14 C -0.113 4.113 15 C -0.115 4.115 16 C -0.131 4.131 17 H 0.108 0.892 18 C 0.451 3.549 19 F -0.182 7.182 20 F -0.185 7.185 21 F -0.191 7.191 22 C -0.097 4.097 23 H 0.272 0.728 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.947 -10.415 0.179 11.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.087 0.913 9 C 0.264 3.736 10 O -0.432 6.432 11 C -0.141 4.141 12 H 0.086 0.914 13 C -0.141 4.141 14 C -0.150 4.150 15 C -0.153 4.153 16 C -0.151 4.151 17 H 0.127 0.873 18 C 0.397 3.603 19 F -0.164 7.164 20 F -0.166 7.166 21 F -0.173 7.173 22 C -0.135 4.135 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.164 -10.401 0.160 11.614 hybrid contribution 0.497 0.569 -0.240 0.793 sum 5.662 -9.832 -0.080 11.346 Atomic orbital electron populations 1.69962 1.07492 1.27790 1.31643 1.26020 0.94558 1.00910 0.92544 0.86392 0.80872 0.81605 0.78477 1.18468 1.19924 1.19929 1.20858 0.94840 0.91944 1.48930 0.91317 1.19375 0.88854 0.87200 0.78203 1.90405 1.15581 1.88626 1.48570 1.21651 0.99697 0.97652 0.95083 0.91380 1.21395 1.00211 0.95514 0.96935 1.21517 0.98521 0.95221 0.99745 1.21582 1.01808 0.98991 0.92875 1.22608 0.99996 0.94521 0.97938 0.87339 1.20827 0.79315 0.82483 0.77625 1.93160 1.46613 1.95926 1.80694 1.93166 1.94944 1.90545 1.37971 1.93134 1.78899 1.48810 1.96458 1.21420 0.99215 0.90574 1.02252 0.91707 0.91412 0.92005 0.91908 0.91782 0.91436 0.90770 0.90209 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.27 11.72 55.57 0.65 -20.62 16 2 C 0.08 2.21 5.50 -17.27 -0.10 2.12 16 3 Si 0.90 19.23 29.56 -169.99 -5.03 14.21 16 4 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.53 -14.44 9.19 -37.69 -0.35 -14.79 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.30 16 9 C 0.37 9.93 5.96 -33.25 -0.20 9.73 16 10 O -0.54 -16.75 14.70 5.42 0.08 -16.67 16 11 C -0.12 -2.49 2.42 -91.77 -0.22 -2.71 16 12 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 13 C -0.10 -1.82 5.19 -26.73 -0.14 -1.96 16 14 C -0.11 -1.52 5.92 -26.73 -0.16 -1.68 16 15 C -0.12 -1.53 4.96 -26.73 -0.13 -1.66 16 16 C -0.13 -1.94 2.16 -90.62 -0.20 -2.13 16 17 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 18 C 0.45 6.76 2.69 37.16 0.10 6.86 16 19 F -0.18 -2.93 16.28 2.25 0.04 -2.90 16 20 F -0.18 -2.95 16.80 2.25 0.04 -2.91 16 21 F -0.19 -2.68 16.80 2.25 0.04 -2.64 16 22 C -0.10 -1.84 3.84 -26.73 -0.10 -1.94 16 23 H 0.27 7.02 8.29 -40.82 -0.34 6.68 16 24 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.77 7.80 -51.93 -0.41 0.36 16 29 H 0.07 1.03 7.80 -51.93 -0.41 0.62 16 30 H 0.08 1.66 7.52 -51.93 -0.39 1.27 16 31 H 0.07 1.38 7.80 -51.93 -0.41 0.97 16 LS Contribution 270.89 15.07 4.08 4.08 Total: -1.00 -30.63 270.89 -5.28 -35.90 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -3.69 Total: -0.29 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -1.49 Total: -8.17 kcal Atomic # 7 Polarization: -21.27 SS G_CDS: 0.65 Total: -20.62 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: 0.08 Total: -16.67 kcal Atomic # 9 Polarization: -8.56 SS G_CDS: 0.11 Total: -8.45 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.63 -5.28 -35.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127075940.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.833 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds