Wall clock time and date at job start Mon Mar 30 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30524 * 1 3 3 Si 1.86801 * 120.00059 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46780 * 300.00161 * 3 2 1 6 6 H 1.48493 * 109.47151 * 60.00065 * 3 2 1 7 7 C 1.40458 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00331 * 180.02562 * 7 2 1 9 9 C 1.41028 * 119.99848 * 359.72128 * 7 2 1 10 10 O 1.21433 * 119.99901 * 0.27333 * 9 7 2 11 11 C 1.50708 * 119.99908 * 180.27687 * 9 7 2 12 12 H 1.08996 * 109.47100 * 329.99942 * 11 9 7 13 13 C 1.53000 * 109.47069 * 90.00121 * 11 9 7 14 14 C 1.53000 * 109.47252 * 180.02562 * 13 11 9 15 15 C 1.53000 * 109.46766 * 299.99664 * 14 13 11 16 16 C 1.53000 * 109.46961 * 60.00157 * 15 14 13 17 17 H 1.09005 * 109.47055 * 59.99620 * 16 15 14 18 18 C 1.52999 * 109.47284 * 179.97438 * 16 15 14 19 19 F 1.39900 * 109.47028 * 59.99957 * 18 16 15 20 20 F 1.39900 * 109.47285 * 179.97438 * 18 16 15 21 21 F 1.39899 * 109.47283 * 300.00049 * 18 16 15 22 22 C 1.53000 * 109.47252 * 299.99545 * 16 15 14 23 23 H 0.96995 * 119.99922 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47224 * 300.00111 * 13 11 9 25 25 H 1.09004 * 109.46917 * 59.99433 * 13 11 9 26 26 H 1.08996 * 109.47043 * 59.99744 * 14 13 11 27 27 H 1.08999 * 109.46849 * 179.97438 * 14 13 11 28 28 H 1.08998 * 109.46920 * 179.97438 * 15 14 13 29 29 H 1.08992 * 109.47753 * 300.00185 * 15 14 13 30 30 H 1.08996 * 109.47043 * 300.00256 * 22 16 15 31 31 H 1.09002 * 109.47283 * 179.97438 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 3.6992 1.3464 -0.0006 5 1 1.8804 2.3964 -1.2125 6 1 1.8806 2.3964 1.2124 7 6 2.0075 -1.2164 -0.0005 8 1 3.0876 -1.2165 -0.0001 9 6 1.3024 -2.4377 0.0049 10 8 0.0881 -2.4377 0.0049 11 6 2.0559 -3.7429 0.0106 12 1 3.0083 -3.6148 -0.5038 13 6 2.3109 -4.1782 1.4550 14 6 3.0765 -5.5029 1.4609 15 6 2.2501 -6.5726 0.7442 16 6 1.9951 -6.1373 -0.7002 17 1 2.9476 -6.0088 -1.2145 18 6 1.1692 -7.2072 -1.4172 19 9 -0.0532 -7.3727 -0.7572 20 9 0.9355 -6.8089 -2.7377 21 9 1.8696 -8.4183 -1.4119 22 6 1.2295 -4.8126 -0.7061 23 1 -0.4850 0.8400 -0.0004 24 1 2.9000 -3.4162 1.9655 25 1 1.3585 -4.3062 1.9694 26 1 4.0289 -5.3744 0.9466 27 1 3.2586 -5.8127 2.4899 28 1 2.7957 -7.5162 0.7480 29 1 1.2977 -6.7011 1.2584 30 1 0.2771 -4.9411 -0.1918 31 1 1.0482 -4.5022 -1.7351 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127075940.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:34 Heat of formation + Delta-G solvation = -248.668253 kcal Electronic energy + Delta-G solvation = -19046.311415 eV Core-core repulsion = 15489.409845 eV Total energy + Delta-G solvation = -3556.901571 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.092 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -51.10884 -48.59313 -48.57219 -40.19226 -37.90319 -34.73801 -32.86730 -31.81944 -28.94279 -26.63415 -24.55198 -22.98113 -21.64650 -20.56458 -19.25010 -19.19221 -18.77336 -18.07149 -16.98374 -16.17299 -15.66569 -15.49694 -15.38548 -15.11580 -14.97815 -14.87032 -14.76120 -14.71562 -14.49068 -14.16982 -13.67233 -13.18878 -13.00277 -12.85337 -12.61078 -12.46665 -12.26112 -12.06740 -11.93932 -11.51558 -11.33511 -11.14606 -10.95613 -9.42710 -8.25072 -7.06664 1.33766 1.38147 1.55634 1.78543 2.21573 2.21943 2.81050 3.02129 3.08282 3.40347 3.77180 3.81035 4.04220 4.28110 4.31978 4.39629 4.50314 4.57126 4.60274 4.87305 5.04214 5.07733 5.17934 5.23189 5.25463 5.27983 5.44438 5.56187 6.01020 6.75505 6.87059 8.32070 8.55815 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.036829 B = 0.005925 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.093439 B = 4724.914090 C = 5038.476904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.025 3.975 3 Si 0.990 3.010 4 H -0.244 1.244 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.563 4.563 8 H 0.087 0.913 9 C 0.345 3.655 10 O -0.597 6.597 11 C -0.115 4.115 12 H 0.086 0.914 13 C -0.100 4.100 14 C -0.101 4.101 15 C -0.114 4.114 16 C -0.122 4.122 17 H 0.135 0.865 18 C 0.454 3.546 19 F -0.192 7.192 20 F -0.193 7.193 21 F -0.180 7.180 22 C -0.090 4.090 23 H 0.279 0.721 24 H 0.064 0.936 25 H 0.037 0.963 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.754 -10.925 0.475 14.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.193 4.193 3 Si 0.809 3.191 4 H -0.167 1.167 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.594 4.594 8 H 0.105 0.895 9 C 0.243 3.757 10 O -0.490 6.490 11 C -0.134 4.134 12 H 0.104 0.896 13 C -0.138 4.138 14 C -0.138 4.138 15 C -0.151 4.151 16 C -0.141 4.141 17 H 0.153 0.847 18 C 0.400 3.600 19 F -0.173 7.173 20 F -0.174 7.174 21 F -0.161 7.161 22 C -0.128 4.128 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.056 0.944 26 H 0.103 0.897 27 H 0.108 0.892 28 H 0.119 0.881 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.996 -10.935 0.458 13.555 hybrid contribution -0.424 0.720 -0.345 0.904 sum 7.572 -10.216 0.113 12.716 Atomic orbital electron populations 1.70109 1.09915 1.29501 1.32721 1.27251 0.95391 1.05560 0.91114 0.85089 0.79765 0.75502 0.78778 1.16700 1.19220 1.19087 1.21422 0.95942 0.92927 1.49083 0.89502 1.20256 0.88585 0.90127 0.76737 1.90363 1.17888 1.89979 1.50818 1.21466 0.99416 0.94908 0.97622 0.89595 1.21365 0.99797 0.98286 0.94323 1.21466 0.98408 0.92179 1.01787 1.21637 1.01890 1.00349 0.91222 1.22552 1.00065 0.91791 0.99702 0.84697 1.20817 0.79036 0.82934 0.77206 1.93148 1.47358 1.95995 1.80846 1.93155 1.95001 1.90687 1.38585 1.93156 1.78512 1.48045 1.96382 1.21222 0.98436 0.92834 1.00312 0.91049 0.91762 0.94390 0.89736 0.89204 0.88148 0.91802 0.93151 0.93237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.17 11.72 21.91 0.26 -46.91 16 2 C 0.03 1.37 5.50 85.43 0.47 1.84 16 3 Si 0.99 39.26 29.56 68.60 2.03 41.29 16 4 H -0.24 -8.93 7.11 99.48 0.71 -8.23 16 5 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 6 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 7 C -0.56 -30.84 9.19 23.50 0.22 -30.62 16 8 H 0.09 4.28 7.85 -2.91 -0.02 4.25 16 9 C 0.34 19.19 5.96 26.37 0.16 19.34 16 10 O -0.60 -38.95 14.70 -3.51 -0.05 -39.01 16 11 C -0.11 -4.72 2.42 -11.54 -0.03 -4.75 16 12 H 0.09 3.19 8.09 -2.39 -0.02 3.17 16 13 C -0.10 -3.47 5.19 30.59 0.16 -3.31 16 14 C -0.10 -2.37 5.92 30.59 0.18 -2.19 16 15 C -0.11 -2.66 4.96 30.59 0.15 -2.51 16 16 C -0.12 -3.35 2.16 -10.79 -0.02 -3.37 16 17 H 0.14 3.05 8.14 -2.38 -0.02 3.03 16 18 C 0.45 12.90 2.69 71.98 0.19 13.10 16 19 F -0.19 -6.09 16.28 44.97 0.73 -5.36 16 20 F -0.19 -6.01 16.80 44.97 0.76 -5.26 16 21 F -0.18 -4.50 16.80 44.97 0.76 -3.75 16 22 C -0.09 -3.47 3.84 30.59 0.12 -3.35 16 23 H 0.28 14.88 8.29 -92.71 -0.77 14.11 16 24 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 25 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.10 1.79 7.80 -2.39 -0.02 1.77 16 29 H 0.06 1.65 7.80 -2.39 -0.02 1.63 16 30 H 0.05 2.20 7.52 -2.39 -0.02 2.19 16 31 H 0.05 2.04 7.80 -2.39 -0.02 2.02 16 Total: -1.00 -69.99 270.89 7.21 -62.78 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 1.14 Total: 12.02 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 1.59 Total: -15.81 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 0.26 Total: -46.91 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -0.05 Total: -39.01 kcal Atomic # 9 Polarization: -16.60 SS G_CDS: 2.24 Total: -14.36 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Total: -69.99 7.21 -62.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127075940.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.885 kcal (2) G-P(sol) polarization free energy of solvation -69.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds