Wall clock time and date at job start Mon Mar 30 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30519 * 1 3 3 Si 1.86798 * 119.99816 * 2 1 4 4 H 1.48504 * 109.47017 * 239.99360 * 3 2 1 5 5 H 1.48500 * 109.47378 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47553 * 119.99645 * 3 2 1 7 7 C 1.40464 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99464 * 180.02562 * 7 2 1 9 9 C 1.41017 * 119.99778 * 0.28463 * 7 2 1 10 10 O 1.21437 * 120.00329 * 359.71655 * 9 7 2 11 11 C 1.50707 * 119.99967 * 179.72200 * 9 7 2 12 12 H 1.08994 * 109.46987 * 46.07092 * 11 9 7 13 13 C 1.52996 * 109.47301 * 166.07090 * 11 9 7 14 14 C 1.53004 * 109.46993 * 59.99858 * 13 11 9 15 15 C 1.53005 * 109.46844 * 60.00255 * 14 13 11 16 16 C 1.52998 * 109.46798 * 299.99486 * 15 14 13 17 17 H 1.08995 * 109.47397 * 299.99926 * 16 15 14 18 18 C 1.53005 * 109.46798 * 179.97438 * 16 15 14 19 19 F 1.39902 * 109.46859 * 60.00438 * 18 16 15 20 20 F 1.39899 * 109.47172 * 179.97438 * 18 16 15 21 21 F 1.39896 * 109.47256 * 300.00213 * 18 16 15 22 22 C 1.52998 * 109.47018 * 286.07366 * 11 9 7 23 23 H 0.96998 * 120.00463 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47061 * 180.02562 * 13 11 9 25 25 H 1.08998 * 109.47099 * 300.00059 * 13 11 9 26 26 H 1.09006 * 109.46779 * 179.97438 * 14 13 11 27 27 H 1.08990 * 109.47236 * 299.99896 * 14 13 11 28 28 H 1.08995 * 109.47087 * 59.99602 * 15 14 13 29 29 H 1.09000 * 109.46644 * 179.97438 * 15 14 13 30 30 H 1.08997 * 109.47268 * 59.99283 * 22 11 9 31 31 H 1.08998 * 109.47497 * 179.97438 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2391 1.6177 0.0000 4 1 3.0930 1.6964 -1.2125 5 1 1.2741 2.7465 -0.0006 6 1 3.0928 1.6966 1.2125 7 6 2.0075 -1.2164 0.0005 8 1 3.0875 -1.2163 0.0010 9 6 1.3024 -2.4377 -0.0050 10 8 0.0881 -2.4377 -0.0050 11 6 2.0560 -3.7428 -0.0107 12 1 2.8549 -3.7043 0.7296 13 6 1.0985 -4.8861 0.3313 14 6 -0.0231 -4.9401 -0.7080 15 6 0.5779 -5.1760 -2.0951 16 6 1.5354 -4.0326 -2.4371 17 1 0.9903 -3.0887 -2.4330 18 6 2.1369 -4.2688 -3.8240 19 9 1.1116 -4.3186 -4.7746 20 9 3.0119 -3.2231 -4.1370 21 9 2.8365 -5.4802 -3.8287 22 6 2.6570 -3.9786 -1.3978 23 1 -0.4851 0.8400 -0.0004 24 1 1.6436 -5.8300 0.3276 25 1 0.6703 -4.7181 1.3195 26 1 -0.7050 -5.7549 -0.4645 27 1 -0.5681 -3.9963 -0.7038 28 1 1.1229 -6.1198 -2.0992 29 1 -0.2212 -5.2149 -2.8354 30 1 3.3390 -3.1641 -1.6415 31 1 3.2024 -4.9223 -1.4019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127076361.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:37 Heat of formation + Delta-G solvation = -237.221270 kcal Electronic energy + Delta-G solvation = -19647.717680 eV Core-core repulsion = 16091.312488 eV Total energy + Delta-G solvation = -3556.405192 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.092 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.10396 -48.58778 -48.55382 -40.52775 -37.34146 -34.68006 -32.56249 -32.15109 -28.74399 -26.58465 -24.40963 -22.98194 -22.05192 -20.27296 -19.29781 -19.22948 -18.56533 -18.05516 -16.90384 -16.18039 -15.60488 -15.53585 -15.42322 -15.05366 -14.89666 -14.84059 -14.73513 -14.69227 -14.57855 -13.66321 -13.59591 -13.12316 -12.95842 -12.88862 -12.65913 -12.53139 -12.24430 -12.04938 -11.98530 -11.50660 -11.13163 -10.95978 -10.87190 -9.20297 -8.15228 -6.99488 1.36407 1.38318 1.50100 1.79050 2.22394 2.25889 2.82253 3.06399 3.11079 3.43798 3.83983 3.85784 4.12730 4.36188 4.43262 4.48030 4.54779 4.65505 4.71495 4.91002 5.05579 5.07660 5.22027 5.25707 5.32383 5.40650 5.48164 5.83449 6.09182 6.80810 6.93647 8.36745 8.61022 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.023498 B = 0.008832 C = 0.007441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.308344 B = 3169.369536 C = 3761.958623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.034 3.966 3 Si 0.976 3.024 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.565 4.565 8 H 0.078 0.922 9 C 0.354 3.646 10 O -0.570 6.570 11 C -0.126 4.126 12 H 0.083 0.917 13 C -0.091 4.091 14 C -0.136 4.136 15 C -0.101 4.101 16 C -0.127 4.127 17 H 0.084 0.916 18 C 0.460 3.540 19 F -0.189 7.189 20 F -0.190 7.190 21 F -0.178 7.178 22 C -0.087 4.087 23 H 0.278 0.722 24 H 0.078 0.922 25 H 0.041 0.959 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.319 -7.504 -4.526 10.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.185 4.185 3 Si 0.796 3.204 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.596 4.596 8 H 0.096 0.904 9 C 0.252 3.748 10 O -0.461 6.461 11 C -0.146 4.146 12 H 0.101 0.899 13 C -0.129 4.129 14 C -0.173 4.173 15 C -0.139 4.139 16 C -0.146 4.146 17 H 0.102 0.898 18 C 0.406 3.594 19 F -0.170 7.170 20 F -0.171 7.171 21 F -0.159 7.159 22 C -0.124 4.124 23 H 0.088 0.912 24 H 0.097 0.903 25 H 0.060 0.940 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.591 -7.481 -4.560 9.891 hybrid contribution 0.355 1.013 -0.192 1.091 sum 4.946 -6.467 -4.752 9.427 Atomic orbital electron populations 1.70045 1.09375 1.29373 1.32775 1.27016 0.95334 1.04836 0.91344 0.85374 0.78799 0.75871 0.80323 1.18148 1.19704 1.17876 1.21302 0.95659 0.93203 1.49476 0.90351 1.19990 0.88716 0.89420 0.76722 1.90231 1.17020 1.88897 1.50002 1.21538 0.99053 0.97013 0.96954 0.89903 1.21264 0.96261 0.97199 0.98132 1.21837 0.98575 1.03647 0.93270 1.21490 0.97690 0.96220 0.98460 1.22413 0.99654 1.03387 0.89181 0.89792 1.20636 0.76058 0.73640 0.89087 1.93140 1.59615 1.96201 1.68084 1.93155 1.70999 1.58715 1.94259 1.93136 1.80026 1.45763 1.96981 1.21329 0.95370 1.03132 0.92574 0.91164 0.90346 0.93994 0.91302 0.90417 0.89358 0.91170 0.91417 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -44.96 11.72 21.91 0.26 -44.70 16 2 C 0.03 1.80 5.50 85.43 0.47 2.27 16 3 Si 0.98 39.26 29.56 68.60 2.03 41.29 16 4 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 6 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 7 C -0.57 -30.12 9.11 23.49 0.21 -29.91 16 8 H 0.08 3.85 7.85 -2.91 -0.02 3.83 16 9 C 0.35 18.48 4.80 26.37 0.13 18.61 16 10 O -0.57 -33.53 11.76 -3.52 -0.04 -33.57 16 11 C -0.13 -5.04 2.88 -11.54 -0.03 -5.08 16 12 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 13 C -0.09 -3.26 5.21 30.59 0.16 -3.10 16 14 C -0.14 -4.96 5.63 30.60 0.17 -4.78 16 15 C -0.10 -3.21 4.96 30.60 0.15 -3.06 16 16 C -0.13 -4.51 1.95 -10.79 -0.02 -4.53 16 17 H 0.08 3.70 7.19 -2.39 -0.02 3.69 16 18 C 0.46 14.83 2.69 71.98 0.19 15.03 16 19 F -0.19 -6.14 16.80 44.97 0.76 -5.39 16 20 F -0.19 -6.52 16.80 44.97 0.76 -5.77 16 21 F -0.18 -5.13 16.28 44.97 0.73 -4.40 16 22 C -0.09 -3.00 4.43 30.59 0.14 -2.86 16 23 H 0.28 14.47 8.29 -92.71 -0.77 13.70 16 24 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 27 H 0.08 3.63 5.05 -2.39 -0.01 3.61 16 28 H 0.09 2.34 7.80 -2.39 -0.02 2.32 16 29 H 0.07 2.13 7.80 -2.39 -0.02 2.11 16 30 H 0.07 2.45 7.75 -2.39 -0.02 2.43 16 31 H 0.09 2.65 7.80 -2.39 -0.02 2.63 16 Total: -1.00 -61.93 263.51 7.20 -54.73 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 1.15 Total: 15.22 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 1.57 Total: -17.42 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.26 Total: -44.70 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -0.04 Total: -33.57 kcal Atomic # 9 Polarization: -17.79 SS G_CDS: 2.24 Total: -15.55 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Total: -61.93 7.20 -54.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127076361.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.491 kcal (2) G-P(sol) polarization free energy of solvation -61.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds