Wall clock time and date at job start Mon Mar 30 2020 05:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30524 * 1 3 3 Si 1.86794 * 120.00176 * 2 1 4 4 H 1.48496 * 109.47569 * 239.99856 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47066 * 119.99870 * 3 2 1 7 7 C 1.40467 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99617 * 179.97438 * 7 2 1 9 9 C 1.41023 * 119.99782 * 0.28193 * 7 2 1 10 10 O 1.21433 * 120.00406 * 359.71799 * 9 7 2 11 11 C 1.50707 * 119.99693 * 179.72514 * 9 7 2 12 12 H 1.08994 * 109.47145 * 34.99502 * 11 9 7 13 13 C 1.52999 * 109.46816 * 274.99684 * 11 9 7 14 14 C 1.52998 * 109.46921 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.47397 * 60.00025 * 14 13 11 16 16 C 1.53001 * 109.46745 * 300.00069 * 15 14 13 17 17 C 1.52995 * 109.47103 * 154.99715 * 11 9 7 18 18 H 1.09002 * 109.47452 * 59.99622 * 17 11 9 19 19 C 1.52999 * 109.47259 * 299.99697 * 17 11 9 20 20 F 1.39904 * 109.47039 * 60.00006 * 19 17 11 21 21 F 1.39902 * 109.47324 * 180.02562 * 19 17 11 22 22 F 1.39902 * 109.47171 * 300.00158 * 19 17 11 23 23 H 0.96991 * 119.99734 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46828 * 299.99820 * 13 11 9 25 25 H 1.09002 * 109.47385 * 59.99919 * 13 11 9 26 26 H 1.09002 * 109.47122 * 299.99516 * 14 13 11 27 27 H 1.09001 * 109.47069 * 179.97438 * 14 13 11 28 28 H 1.08995 * 109.46967 * 180.02562 * 15 14 13 29 29 H 1.09002 * 109.47400 * 59.99661 * 15 14 13 30 30 H 1.09002 * 109.46839 * 299.99936 * 16 15 14 31 31 H 1.09002 * 109.47065 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 3.0931 1.6964 -1.2124 5 1 1.2742 2.7464 -0.0006 6 1 3.0930 1.6963 1.2125 7 6 2.0076 -1.2165 0.0005 8 1 3.0876 -1.2164 0.0001 9 6 1.3024 -2.4377 -0.0049 10 8 0.0881 -2.4378 -0.0049 11 6 2.0559 -3.7429 -0.0106 12 1 2.9666 -3.6392 0.5793 13 6 2.4199 -4.1153 -1.4492 14 6 3.1843 -5.4406 -1.4551 15 6 2.3066 -6.5384 -0.8506 16 6 1.9427 -6.1659 0.5881 17 6 1.1787 -4.8409 0.5941 18 1 0.2680 -4.9445 0.0042 19 6 0.8148 -4.4684 2.0328 20 9 0.1153 -3.2568 2.0381 21 9 0.0132 -5.4727 2.5860 22 9 1.9837 -4.3354 2.7900 23 1 -0.4849 0.8400 -0.0004 24 1 1.5091 -4.2190 -2.0391 25 1 3.0448 -3.3330 -1.8801 26 1 4.0950 -5.3374 -0.8651 27 1 3.4432 -5.7062 -2.4801 28 1 2.8514 -7.4824 -0.8543 29 1 1.3959 -6.6417 -1.4406 30 1 2.8534 -6.0626 1.1781 31 1 1.3178 -6.9482 1.0190 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129500005.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:16 Heat of formation + Delta-G solvation = -221.973361 kcal Electronic energy + Delta-G solvation = -19900.149715 eV Core-core repulsion = 16344.405722 eV Total energy + Delta-G solvation = -3555.743993 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.092 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.24886 -46.84998 -46.49667 -38.61139 -35.92257 -32.62212 -31.23134 -30.50189 -26.91748 -24.95459 -22.83076 -21.43941 -20.03435 -18.97534 -17.50842 -17.29194 -16.75319 -16.31083 -15.29235 -14.34992 -14.01224 -13.89848 -13.63188 -13.54530 -13.22577 -13.14953 -13.01423 -12.72087 -12.61568 -12.29748 -12.08367 -11.46534 -11.31174 -11.20857 -10.91105 -10.82307 -10.65197 -10.47910 -10.35719 -9.95860 -9.84517 -9.65400 -8.83944 -7.31021 -6.18523 -4.84205 3.09206 3.15652 3.17657 3.60427 4.06053 4.24976 4.54681 4.78124 4.80754 5.12838 5.25961 5.29591 5.49035 5.62355 5.77875 5.79563 5.91619 5.94608 6.02198 6.13022 6.30510 6.42784 6.48768 6.56789 6.72202 6.80878 6.95957 7.29863 8.12008 8.86910 8.92654 10.38791 10.61917 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.025127 B = 0.009368 C = 0.007746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.085724 B = 2988.182526 C = 3613.827920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.084 3.916 3 Si 0.901 3.099 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.066 0.934 9 C 0.365 3.635 10 O -0.530 6.530 11 C -0.126 4.126 12 H 0.076 0.924 13 C -0.095 4.095 14 C -0.121 4.121 15 C -0.112 4.112 16 C -0.119 4.119 17 C -0.111 4.111 18 H 0.111 0.889 19 C 0.448 3.552 20 F -0.147 7.147 21 F -0.202 7.202 22 F -0.195 7.195 23 H 0.272 0.728 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.955 -8.821 -0.358 10.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.084 0.916 9 C 0.258 3.742 10 O -0.418 6.418 11 C -0.146 4.146 12 H 0.094 0.906 13 C -0.132 4.132 14 C -0.159 4.159 15 C -0.149 4.149 16 C -0.156 4.156 17 C -0.130 4.130 18 H 0.130 0.870 19 C 0.394 3.606 20 F -0.128 7.128 21 F -0.184 7.184 22 F -0.177 7.177 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.171 -8.763 -0.321 9.711 hybrid contribution 0.577 0.874 0.337 1.100 sum 4.748 -7.889 0.016 9.208 Atomic orbital electron populations 1.69940 1.07382 1.27862 1.31336 1.25968 0.94554 1.00722 0.92646 0.86525 0.80161 0.81010 0.79748 1.19055 1.20400 1.19028 1.20692 0.94652 0.91856 1.49077 0.91552 1.19320 0.89031 0.87000 0.78816 1.90429 1.15155 1.88253 1.47953 1.21848 0.99285 0.96846 0.96599 0.90570 1.21290 1.00119 0.96095 0.95717 1.21624 0.98613 0.95475 1.00189 1.21457 1.00064 0.98138 0.95279 1.21605 1.00383 0.95396 0.98232 1.22216 1.02998 0.97430 0.90375 0.87042 1.20703 0.74399 0.75600 0.89943 1.93422 1.78810 1.43891 1.96639 1.93084 1.75140 1.62068 1.88074 1.93092 1.49419 1.95898 1.79242 0.91686 0.92031 0.91047 0.92063 0.92254 0.92022 0.91820 0.91169 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.28 11.72 55.57 0.65 -20.63 16 2 C 0.08 2.29 5.50 -17.27 -0.10 2.19 16 3 Si 0.90 19.63 29.56 -169.99 -5.03 14.60 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.53 -14.55 9.21 -37.69 -0.35 -14.89 16 8 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 9 C 0.36 9.78 4.71 -33.25 -0.16 9.62 16 10 O -0.53 -15.95 12.24 5.42 0.07 -15.89 16 11 C -0.13 -2.64 1.81 -91.77 -0.17 -2.81 16 12 H 0.08 1.57 7.78 -51.93 -0.40 1.17 16 13 C -0.09 -1.68 5.19 -26.73 -0.14 -1.82 16 14 C -0.12 -1.67 5.92 -26.73 -0.16 -1.83 16 15 C -0.11 -1.45 5.92 -26.73 -0.16 -1.61 16 16 C -0.12 -1.76 4.96 -26.76 -0.13 -1.90 16 17 C -0.11 -2.12 1.51 -90.65 -0.14 -2.26 16 18 H 0.11 2.25 7.87 -51.93 -0.41 1.84 16 19 C 0.45 9.40 2.66 37.16 0.10 9.50 16 20 F -0.15 -3.78 13.26 2.25 0.03 -3.75 16 21 F -0.20 -3.91 16.80 2.25 0.04 -3.87 16 22 F -0.19 -3.97 16.28 2.25 0.04 -3.93 16 23 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 24 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.02 7.80 -51.93 -0.41 0.61 16 31 H 0.07 0.92 7.80 -51.93 -0.41 0.51 16 LS Contribution 264.83 15.07 3.99 3.99 Total: -1.00 -30.88 264.83 -5.31 -36.19 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -3.71 Total: -0.91 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -1.39 Total: -5.80 kcal Atomic # 7 Polarization: -21.28 SS G_CDS: 0.65 Total: -20.63 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.07 Total: -15.89 kcal Atomic # 9 Polarization: -11.65 SS G_CDS: 0.10 Total: -11.55 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.60 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.88 -5.31 -36.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129500005.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.786 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds