Wall clock time and date at job start Mon Mar 30 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30524 * 1 3 3 Si 1.86794 * 120.00176 * 2 1 4 4 H 1.48496 * 109.47569 * 239.99856 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47066 * 119.99870 * 3 2 1 7 7 C 1.40467 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99617 * 179.97438 * 7 2 1 9 9 C 1.41023 * 119.99782 * 0.28193 * 7 2 1 10 10 O 1.21433 * 120.00406 * 359.71799 * 9 7 2 11 11 C 1.50707 * 119.99693 * 179.72514 * 9 7 2 12 12 H 1.08994 * 109.47145 * 34.99502 * 11 9 7 13 13 C 1.52999 * 109.46816 * 274.99684 * 11 9 7 14 14 C 1.52998 * 109.46921 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.47397 * 60.00025 * 14 13 11 16 16 C 1.53001 * 109.46745 * 300.00069 * 15 14 13 17 17 C 1.52995 * 109.47103 * 154.99715 * 11 9 7 18 18 H 1.09002 * 109.47452 * 59.99622 * 17 11 9 19 19 C 1.52999 * 109.47259 * 299.99697 * 17 11 9 20 20 F 1.39904 * 109.47039 * 60.00006 * 19 17 11 21 21 F 1.39902 * 109.47324 * 180.02562 * 19 17 11 22 22 F 1.39902 * 109.47171 * 300.00158 * 19 17 11 23 23 H 0.96991 * 119.99734 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46828 * 299.99820 * 13 11 9 25 25 H 1.09002 * 109.47385 * 59.99919 * 13 11 9 26 26 H 1.09002 * 109.47122 * 299.99516 * 14 13 11 27 27 H 1.09001 * 109.47069 * 179.97438 * 14 13 11 28 28 H 1.08995 * 109.46967 * 180.02562 * 15 14 13 29 29 H 1.09002 * 109.47400 * 59.99661 * 15 14 13 30 30 H 1.09002 * 109.46839 * 299.99936 * 16 15 14 31 31 H 1.09002 * 109.47065 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 3.0931 1.6964 -1.2124 5 1 1.2742 2.7464 -0.0006 6 1 3.0930 1.6963 1.2125 7 6 2.0076 -1.2165 0.0005 8 1 3.0876 -1.2164 0.0001 9 6 1.3024 -2.4377 -0.0049 10 8 0.0881 -2.4378 -0.0049 11 6 2.0559 -3.7429 -0.0106 12 1 2.9666 -3.6392 0.5793 13 6 2.4199 -4.1153 -1.4492 14 6 3.1843 -5.4406 -1.4551 15 6 2.3066 -6.5384 -0.8506 16 6 1.9427 -6.1659 0.5881 17 6 1.1787 -4.8409 0.5941 18 1 0.2680 -4.9445 0.0042 19 6 0.8148 -4.4684 2.0328 20 9 0.1153 -3.2568 2.0381 21 9 0.0132 -5.4727 2.5860 22 9 1.9837 -4.3354 2.7900 23 1 -0.4849 0.8400 -0.0004 24 1 1.5091 -4.2190 -2.0391 25 1 3.0448 -3.3330 -1.8801 26 1 4.0950 -5.3374 -0.8651 27 1 3.4432 -5.7062 -2.4801 28 1 2.8514 -7.4824 -0.8543 29 1 1.3959 -6.6417 -1.4406 30 1 2.8534 -6.0626 1.1781 31 1 1.3178 -6.9482 1.0190 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129500005.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:15 Heat of formation + Delta-G solvation = -240.123555 kcal Electronic energy + Delta-G solvation = -19900.936767 eV Core-core repulsion = 16344.405722 eV Total energy + Delta-G solvation = -3556.531045 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.092 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.95794 -48.49771 -48.33163 -40.19777 -37.74347 -34.69060 -32.62561 -32.00841 -28.89035 -26.54650 -24.33740 -22.95178 -21.53364 -20.64190 -19.16739 -19.01148 -18.42692 -18.28162 -17.18569 -15.89551 -15.62593 -15.36289 -15.29181 -15.04835 -14.88878 -14.74793 -14.58342 -14.53590 -14.44442 -13.85646 -13.72801 -13.16731 -12.96798 -12.75320 -12.55686 -12.41021 -12.16341 -12.10430 -11.93467 -11.42235 -11.32898 -11.08144 -10.86595 -9.37896 -8.21452 -7.00565 1.36241 1.36840 1.50126 1.95318 2.21987 2.25776 2.95768 3.15888 3.26819 3.44314 3.80200 3.90699 4.18715 4.28377 4.38918 4.43708 4.53893 4.59670 4.62254 4.97125 5.02195 5.14014 5.21793 5.24643 5.27351 5.32482 5.39981 5.56427 6.02181 6.78928 6.88278 8.35409 8.59131 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.025127 B = 0.009368 C = 0.007746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.085724 B = 2988.182526 C = 3613.827920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.029 3.971 3 Si 0.983 3.017 4 H -0.251 1.251 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.565 4.565 8 H 0.079 0.921 9 C 0.347 3.653 10 O -0.572 6.572 11 C -0.120 4.120 12 H 0.079 0.921 13 C -0.092 4.092 14 C -0.113 4.113 15 C -0.109 4.109 16 C -0.113 4.113 17 C -0.105 4.105 18 H 0.095 0.905 19 C 0.442 3.558 20 F -0.181 7.181 21 F -0.192 7.192 22 F -0.191 7.191 23 H 0.278 0.722 24 H 0.046 0.954 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.107 -9.875 -0.822 12.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.190 4.190 3 Si 0.802 3.198 4 H -0.175 1.175 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.596 4.596 8 H 0.097 0.903 9 C 0.243 3.757 10 O -0.463 6.463 11 C -0.139 4.139 12 H 0.098 0.902 13 C -0.129 4.129 14 C -0.151 4.151 15 C -0.146 4.146 16 C -0.150 4.150 17 C -0.124 4.124 18 H 0.114 0.886 19 C 0.388 3.612 20 F -0.162 7.162 21 F -0.173 7.173 22 F -0.172 7.172 23 H 0.088 0.912 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.103 0.897 28 H 0.116 0.884 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.344 -9.840 -0.788 11.734 hybrid contribution -0.127 1.177 0.521 1.294 sum 6.217 -8.662 -0.267 10.666 Atomic orbital electron populations 1.70083 1.09574 1.29334 1.32602 1.27111 0.95398 1.05103 0.91339 0.85291 0.78695 0.75393 0.80419 1.17461 1.19611 1.18176 1.21244 0.95551 0.93124 1.49706 0.90292 1.20032 0.88832 0.89517 0.77317 1.90390 1.17020 1.89490 1.49430 1.21641 0.98616 0.94571 0.99089 0.90242 1.21283 1.00013 0.98692 0.92961 1.21592 0.98348 0.92915 1.02209 1.21495 1.00394 0.99249 0.93440 1.21665 1.00273 0.92828 1.00244 1.22239 1.02618 0.99269 0.88316 0.88632 1.21076 0.74260 0.74611 0.91283 1.93353 1.79705 1.46320 1.96865 1.93093 1.74944 1.61239 1.88052 1.93088 1.49014 1.95859 1.79288 0.91214 0.93502 0.91753 0.90950 0.89707 0.88428 0.91848 0.90296 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.03 11.72 21.91 0.26 -46.77 16 2 C 0.03 1.62 5.50 85.43 0.47 2.09 16 3 Si 0.98 40.41 29.56 68.60 2.03 42.44 16 4 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 7 C -0.56 -31.57 9.21 23.50 0.22 -31.35 16 8 H 0.08 4.04 7.85 -2.91 -0.02 4.02 16 9 C 0.35 19.16 4.71 26.37 0.12 19.29 16 10 O -0.57 -36.05 12.24 -3.51 -0.04 -36.10 16 11 C -0.12 -5.01 1.81 -11.54 -0.02 -5.03 16 12 H 0.08 3.23 7.78 -2.39 -0.02 3.21 16 13 C -0.09 -3.18 5.19 30.59 0.16 -3.02 16 14 C -0.11 -2.72 5.92 30.59 0.18 -2.54 16 15 C -0.11 -2.38 5.92 30.60 0.18 -2.20 16 16 C -0.11 -3.03 4.96 30.58 0.15 -2.87 16 17 C -0.10 -3.97 1.51 -10.81 -0.02 -3.99 16 18 H 0.10 3.92 7.87 -2.39 -0.02 3.90 16 19 C 0.44 18.66 2.66 71.98 0.19 18.85 16 20 F -0.18 -9.72 13.26 44.97 0.60 -9.12 16 21 F -0.19 -7.33 16.80 44.97 0.76 -6.57 16 22 F -0.19 -7.68 16.28 44.97 0.73 -6.95 16 23 H 0.28 15.04 8.29 -92.71 -0.77 14.28 16 24 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 2.01 7.80 -2.39 -0.02 1.99 16 31 H 0.08 2.00 7.80 -2.39 -0.02 1.98 16 Total: -1.00 -69.82 264.83 7.10 -62.72 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 1.14 Total: 11.12 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 1.64 Total: -10.77 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.26 Total: -46.77 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -0.04 Total: -36.10 kcal Atomic # 9 Polarization: -24.73 SS G_CDS: 2.08 Total: -22.64 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -69.82 7.10 -62.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129500005.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.402 kcal (2) G-P(sol) polarization free energy of solvation -69.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds