Wall clock time and date at job start Mon Mar 30 2020 05:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30520 * 1 3 3 Si 1.86800 * 120.00493 * 2 1 4 4 H 1.48501 * 109.46758 * 269.99956 * 3 2 1 5 5 H 1.48495 * 109.46664 * 29.99808 * 3 2 1 6 6 H 1.48492 * 109.47108 * 149.99840 * 3 2 1 7 7 C 1.40467 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00136 * 179.97438 * 7 2 1 9 9 C 1.41025 * 120.00004 * 0.02562 * 7 2 1 10 10 O 1.21435 * 119.99775 * 359.71815 * 9 7 2 11 11 C 1.50700 * 120.00151 * 179.97438 * 9 7 2 12 12 H 1.08993 * 109.47179 * 330.00044 * 11 9 7 13 13 C 1.53000 * 109.46911 * 90.00215 * 11 9 7 14 14 C 1.53000 * 109.47188 * 180.02562 * 13 11 9 15 15 C 1.53004 * 109.46702 * 299.99465 * 14 13 11 16 16 C 1.53000 * 109.46862 * 60.00335 * 15 14 13 17 17 C 1.52999 * 109.47170 * 209.99416 * 11 9 7 18 18 H 1.08993 * 109.47582 * 300.00382 * 17 11 9 19 19 C 1.53001 * 109.46933 * 60.00192 * 17 11 9 20 20 F 1.39903 * 109.47169 * 59.99653 * 19 17 11 21 21 F 1.39896 * 109.47451 * 179.97438 * 19 17 11 22 22 F 1.39903 * 109.47396 * 300.00175 * 19 17 11 23 23 H 0.96996 * 119.99475 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47021 * 299.99465 * 13 11 9 25 25 H 1.08997 * 109.47780 * 59.99765 * 13 11 9 26 26 H 1.09001 * 109.47260 * 179.97438 * 14 13 11 27 27 H 1.08997 * 109.47216 * 59.99096 * 14 13 11 28 28 H 1.08997 * 109.46984 * 299.99773 * 15 14 13 29 29 H 1.09005 * 109.47053 * 179.97438 * 15 14 13 30 30 H 1.09004 * 109.47021 * 180.02562 * 16 15 14 31 31 H 1.08997 * 109.47780 * 59.99926 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 2.4868 2.0462 -1.4001 5 1 1.4368 2.6526 0.7000 6 1 3.5368 1.4400 0.7000 7 6 2.0075 -1.2165 0.0005 8 1 3.0875 -1.2166 0.0001 9 6 1.3023 -2.4378 0.0005 10 8 0.0880 -2.4377 0.0052 11 6 2.0558 -3.7429 0.0005 12 1 3.0081 -3.6127 -0.5132 13 6 2.3107 -4.1846 1.4431 14 6 3.0761 -5.5094 1.4431 15 6 2.2496 -6.5759 0.7218 16 6 1.9947 -6.1342 -0.7208 17 6 1.2288 -4.8092 -0.7206 18 1 0.2764 -4.9395 -0.2068 19 6 0.9737 -4.3676 -2.1631 20 9 2.1961 -4.2004 -2.8226 21 9 0.2181 -5.3428 -2.8227 22 9 0.2743 -3.1559 -2.1632 23 1 -0.4849 0.8401 -0.0004 24 1 2.8999 -3.4250 1.9569 25 1 1.3583 -4.3149 1.9569 26 1 3.2581 -5.8238 2.4708 27 1 4.0285 -5.3787 0.9294 28 1 1.2973 -6.7065 1.2355 29 1 2.7951 -7.5196 0.7214 30 1 1.4055 -6.8938 -1.2346 31 1 2.9471 -6.0036 -1.2345 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129500226.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:17 Heat of formation + Delta-G solvation = -241.085346 kcal Electronic energy + Delta-G solvation = -19898.325870 eV Core-core repulsion = 16341.753119 eV Total energy + Delta-G solvation = -3556.572751 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.092 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.97700 -48.50813 -48.36431 -40.19908 -37.74525 -34.69296 -32.63935 -31.99605 -28.91015 -26.56184 -24.34337 -22.95625 -21.55055 -20.64117 -19.18231 -19.03697 -18.44408 -18.27386 -17.19086 -15.89886 -15.62280 -15.37551 -15.28922 -15.04929 -14.90021 -14.75290 -14.59542 -14.53522 -14.45787 -13.86327 -13.80154 -13.15921 -12.99904 -12.76364 -12.55594 -12.42657 -12.17003 -12.10005 -11.92698 -11.42654 -11.33523 -11.09373 -10.88744 -9.38555 -8.22054 -7.01370 1.34129 1.36284 1.51525 1.93788 2.21677 2.24736 2.94247 3.14526 3.24658 3.43951 3.79724 3.89765 4.18638 4.27974 4.37865 4.43247 4.53497 4.59762 4.61845 4.96755 5.01656 5.13524 5.21319 5.24577 5.26893 5.31951 5.39235 5.56171 6.01945 6.78508 6.87937 8.34957 8.58743 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.025065 B = 0.009386 C = 0.007815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.837580 B = 2982.422111 C = 3582.036215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.030 3.970 3 Si 0.982 3.018 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.247 1.247 7 C -0.565 4.565 8 H 0.078 0.922 9 C 0.349 3.651 10 O -0.575 6.575 11 C -0.120 4.120 12 H 0.079 0.921 13 C -0.092 4.092 14 C -0.113 4.113 15 C -0.109 4.109 16 C -0.112 4.112 17 C -0.106 4.106 18 H 0.096 0.904 19 C 0.442 3.558 20 F -0.189 7.189 21 F -0.191 7.191 22 F -0.184 7.184 23 H 0.278 0.722 24 H 0.062 0.938 25 H 0.046 0.954 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.089 -9.957 0.521 12.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.189 4.189 3 Si 0.802 3.198 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.170 1.170 7 C -0.596 4.596 8 H 0.097 0.903 9 C 0.246 3.754 10 O -0.466 6.466 11 C -0.140 4.140 12 H 0.098 0.902 13 C -0.130 4.130 14 C -0.150 4.150 15 C -0.146 4.146 16 C -0.150 4.150 17 C -0.125 4.125 18 H 0.114 0.886 19 C 0.389 3.611 20 F -0.171 7.171 21 F -0.172 7.172 22 F -0.165 7.165 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.334 -9.921 0.492 11.781 hybrid contribution -0.105 1.215 -0.529 1.330 sum 6.228 -8.705 -0.036 10.704 Atomic orbital electron populations 1.70088 1.09573 1.29272 1.32601 1.27111 0.95404 1.05107 0.91328 0.85246 0.79347 0.75760 0.79490 1.18893 1.19298 1.17034 1.21283 0.95533 0.93164 1.49635 0.90344 1.20012 0.88795 0.89475 0.77153 1.90379 1.17069 1.89499 1.49697 1.21640 0.99036 0.94835 0.98440 0.90233 1.21283 1.00245 0.98454 0.93012 1.21589 0.98612 0.93056 1.01783 1.21495 1.00886 0.99170 0.93030 1.21684 1.00381 0.92723 1.00186 1.22278 1.03352 0.99030 0.87854 0.88592 1.21062 0.73638 0.75062 0.91385 1.93092 1.44695 1.95566 1.83755 1.93094 1.77175 1.63075 1.83890 1.93328 1.79603 1.46697 1.96870 0.91210 0.91879 0.93501 0.89715 0.90926 0.91860 0.88390 0.89838 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.04 11.72 21.91 0.26 -46.79 16 2 C 0.03 1.63 5.50 85.43 0.47 2.10 16 3 Si 0.98 40.54 29.56 68.60 2.03 42.57 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 6 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 7 C -0.56 -31.68 9.19 23.50 0.22 -31.46 16 8 H 0.08 4.04 7.85 -2.91 -0.02 4.02 16 9 C 0.35 19.33 4.46 26.37 0.12 19.44 16 10 O -0.58 -36.33 12.71 -3.51 -0.04 -36.38 16 11 C -0.12 -5.03 1.83 -11.54 -0.02 -5.05 16 12 H 0.08 3.23 7.75 -2.39 -0.02 3.21 16 13 C -0.09 -3.21 5.18 30.59 0.16 -3.05 16 14 C -0.11 -2.73 5.92 30.60 0.18 -2.55 16 15 C -0.11 -2.38 5.92 30.60 0.18 -2.20 16 16 C -0.11 -3.00 4.96 30.61 0.15 -2.85 16 17 C -0.11 -3.99 1.53 -10.78 -0.02 -4.01 16 18 H 0.10 3.94 7.85 -2.39 -0.02 3.92 16 19 C 0.44 18.60 2.66 71.98 0.19 18.79 16 20 F -0.19 -7.58 16.28 44.97 0.73 -6.85 16 21 F -0.19 -7.24 16.80 44.97 0.76 -6.49 16 22 F -0.18 -9.80 13.50 44.97 0.61 -9.20 16 23 H 0.28 15.02 8.29 -92.71 -0.77 14.25 16 24 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 25 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.08 1.99 7.80 -2.38 -0.02 1.97 16 31 H 0.08 2.02 7.80 -2.39 -0.02 2.00 16 Total: -1.00 -70.07 265.26 7.10 -62.96 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 1.14 Total: 10.99 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 1.63 Total: -10.84 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.26 Total: -46.79 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -0.04 Total: -36.38 kcal Atomic # 9 Polarization: -24.62 SS G_CDS: 2.09 Total: -22.53 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -70.07 7.10 -62.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129500226.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.123 kcal (2) G-P(sol) polarization free energy of solvation -70.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds