Wall clock time and date at job start Mon Mar 30 2020 05:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30517 * 1 3 3 Si 1.86803 * 119.99995 * 2 1 4 4 H 1.48497 * 109.46958 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46999 * 120.00146 * 3 2 1 6 6 H 1.48500 * 109.47347 * 240.00219 * 3 2 1 7 7 C 1.40458 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00323 * 179.97438 * 7 2 1 9 9 C 1.41033 * 119.99809 * 359.97438 * 7 2 1 10 10 O 1.21428 * 119.99852 * 359.97438 * 9 7 2 11 11 C 1.50700 * 119.99960 * 180.02562 * 9 7 2 12 12 H 1.09000 * 109.47038 * 359.33864 * 11 9 7 13 13 C 1.53008 * 109.46901 * 119.33735 * 11 9 7 14 14 C 1.52995 * 109.46994 * 59.99806 * 13 11 9 15 15 C 1.52996 * 109.46945 * 60.00108 * 14 13 11 16 16 C 1.53001 * 109.47349 * 299.99316 * 15 14 13 17 17 C 1.52995 * 109.46539 * 60.00436 * 16 15 14 18 18 H 1.08996 * 109.47640 * 60.00136 * 17 16 15 19 19 C 1.53008 * 109.46994 * 179.97438 * 17 16 15 20 20 F 1.39906 * 109.47041 * 179.97438 * 19 17 16 21 21 F 1.39891 * 109.46835 * 299.99910 * 19 17 16 22 22 F 1.39898 * 109.46844 * 59.99885 * 19 17 16 23 23 H 0.96996 * 120.00320 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.46751 * 180.02562 * 13 11 9 25 25 H 1.09003 * 109.46800 * 299.99741 * 13 11 9 26 26 H 1.09009 * 109.46859 * 179.97438 * 14 13 11 27 27 H 1.08996 * 109.47640 * 299.99784 * 14 13 11 28 28 H 1.09000 * 109.47655 * 60.00240 * 15 14 13 29 29 H 1.09006 * 109.46869 * 179.97438 * 15 14 13 30 30 H 1.08997 * 109.46930 * 179.97438 * 16 15 14 31 31 H 1.08991 * 109.47002 * 300.00683 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6178 0.0000 4 1 1.2742 2.7464 0.0006 5 1 3.0930 1.6964 1.2125 6 1 3.0929 1.6965 -1.2125 7 6 2.0075 -1.2164 -0.0005 8 1 3.0875 -1.2163 -0.0010 9 6 1.3024 -2.4378 -0.0005 10 8 0.0881 -2.4378 0.0004 11 6 2.0560 -3.7428 -0.0005 12 1 3.1276 -3.5436 -0.0124 13 6 1.6989 -4.5379 1.2570 14 6 0.1948 -4.8174 1.2737 15 6 -0.1872 -5.6269 0.0329 16 6 0.1697 -4.8319 -1.2246 17 6 1.6738 -4.5524 -1.2413 18 1 2.2189 -5.4963 -1.2413 19 6 2.0310 -3.7578 -2.4992 20 9 3.4064 -3.5017 -2.5141 21 9 1.6817 -4.4985 -3.6333 22 9 1.3315 -2.5463 -2.4997 23 1 -0.4850 0.8400 0.0004 24 1 2.2443 -5.4816 1.2572 25 1 1.9711 -3.9611 2.1410 26 1 -0.0595 -5.3842 2.1694 27 1 -0.3503 -3.8735 1.2737 28 1 0.3577 -6.5709 0.0329 29 1 -1.2588 -5.8264 0.0450 30 1 -0.1020 -5.4088 -2.1085 31 1 -0.3752 -3.8880 -1.2246 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129500441.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:19 Heat of formation + Delta-G solvation = -214.072351 kcal Electronic energy + Delta-G solvation = -20265.405017 eV Core-core repulsion = 16710.003638 eV Total energy + Delta-G solvation = -3555.401380 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.092 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.31334 -46.89965 -46.61335 -38.88795 -35.29301 -32.51502 -31.21013 -30.41919 -26.92075 -24.90804 -22.58759 -21.29811 -20.33430 -18.62623 -17.53663 -17.44376 -16.69798 -16.27092 -15.02991 -14.56554 -14.06580 -13.77271 -13.54923 -13.34569 -13.24575 -13.10610 -12.86505 -12.77785 -12.58631 -11.97706 -11.92501 -11.47763 -11.28081 -11.12956 -11.03221 -10.76769 -10.39499 -10.26297 -10.14397 -9.98875 -9.58861 -9.48351 -8.83906 -7.18914 -6.15528 -4.83389 3.09449 3.15730 3.18508 3.54386 4.06609 4.17815 4.57515 4.75066 4.85781 5.32809 5.42240 5.52066 5.74290 5.82895 5.89764 5.94040 6.06236 6.16711 6.23684 6.39079 6.52710 6.70283 6.77443 6.84752 6.89582 7.13794 7.27540 7.35693 8.13415 8.86421 8.93412 10.37291 10.60348 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.022941 B = 0.011162 C = 0.008947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.244362 B = 2507.997495 C = 3128.643866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.088 3.912 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.065 0.935 9 C 0.373 3.627 10 O -0.526 6.526 11 C -0.134 4.134 12 H 0.073 0.927 13 C -0.090 4.090 14 C -0.135 4.135 15 C -0.097 4.097 16 C -0.131 4.131 17 C -0.107 4.107 18 H 0.091 0.909 19 C 0.447 3.553 20 F -0.191 7.191 21 F -0.200 7.200 22 F -0.153 7.153 23 H 0.272 0.728 24 H 0.046 0.954 25 H 0.062 0.938 26 H 0.043 0.957 27 H 0.106 0.894 28 H 0.044 0.956 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.750 -7.069 -1.097 7.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.204 1.204 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.083 0.917 9 C 0.269 3.731 10 O -0.415 6.415 11 C -0.153 4.153 12 H 0.091 0.909 13 C -0.128 4.128 14 C -0.172 4.172 15 C -0.134 4.134 16 C -0.168 4.168 17 C -0.127 4.127 18 H 0.109 0.891 19 C 0.393 3.607 20 F -0.173 7.173 21 F -0.182 7.182 22 F -0.134 7.134 23 H 0.083 0.917 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.124 0.876 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.000 -7.003 -1.129 7.370 hybrid contribution 0.976 0.827 -0.319 1.319 sum 2.976 -6.175 -1.448 7.007 Atomic orbital electron populations 1.69909 1.07312 1.27863 1.31393 1.25913 0.94529 1.00599 0.92520 0.86568 0.80253 0.81125 0.79803 1.20401 1.19063 1.19012 1.20740 0.94604 0.91915 1.48420 0.91709 1.19128 0.88958 0.86580 0.78482 1.90224 1.15160 1.87474 1.48651 1.21796 1.01757 0.99364 0.92416 0.90859 1.21208 0.96603 0.98011 0.96959 1.21808 0.96863 1.02768 0.95719 1.21251 1.00057 0.97083 0.95017 1.21865 0.93151 1.04339 0.97473 1.22216 1.00710 0.98261 0.91479 0.89087 1.20752 0.74303 0.79959 0.85643 1.93113 1.32628 1.94721 1.96827 1.93090 1.92048 1.77320 1.55745 1.93333 1.78244 1.45537 1.96294 0.91710 0.93509 0.91929 0.93832 0.87578 0.93683 0.92391 0.92976 0.86409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.61 11.72 55.57 0.65 -19.95 16 2 C 0.09 2.33 5.50 -17.27 -0.10 2.24 16 3 Si 0.90 19.60 29.56 -169.99 -5.03 14.57 16 4 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.53 -14.15 8.72 -37.69 -0.33 -14.48 16 8 H 0.06 1.66 7.78 -52.49 -0.41 1.26 16 9 C 0.37 9.60 3.31 -33.25 -0.11 9.49 16 10 O -0.53 -14.65 9.73 5.43 0.05 -14.59 16 11 C -0.13 -2.80 2.41 -91.77 -0.22 -3.02 16 12 H 0.07 1.50 7.57 -51.93 -0.39 1.11 16 13 C -0.09 -1.66 5.44 -26.73 -0.15 -1.80 16 14 C -0.13 -2.48 5.63 -26.74 -0.15 -2.63 16 15 C -0.10 -1.62 5.92 -26.73 -0.16 -1.78 16 16 C -0.13 -2.49 4.66 -26.73 -0.12 -2.61 16 17 C -0.11 -2.04 2.05 -90.62 -0.19 -2.22 16 18 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 19 C 0.45 9.16 2.66 37.16 0.10 9.26 16 20 F -0.19 -3.86 16.80 2.25 0.04 -3.82 16 21 F -0.20 -3.79 16.80 2.25 0.04 -3.75 16 22 F -0.15 -3.72 13.87 2.25 0.03 -3.69 16 23 H 0.27 6.96 8.29 -40.82 -0.34 6.62 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 27 H 0.11 2.38 5.53 -51.93 -0.29 2.09 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.89 7.80 -51.93 -0.41 0.48 16 31 H 0.12 2.70 5.15 -51.93 -0.27 2.44 16 LS Contribution 257.08 15.07 3.87 3.87 Total: -1.00 -28.74 257.08 -5.19 -33.94 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -3.43 Total: 0.98 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -1.42 Total: -7.56 kcal Atomic # 7 Polarization: -20.61 SS G_CDS: 0.65 Total: -19.95 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.05 Total: -14.59 kcal Atomic # 9 Polarization: -11.36 SS G_CDS: 0.11 Total: -11.26 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.57 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.74 -5.19 -33.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129500441.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.137 kcal (2) G-P(sol) polarization free energy of solvation -28.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds