Wall clock time and date at job start Mon Mar 30 2020 05:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30517 * 1 3 3 Si 1.86803 * 119.99995 * 2 1 4 4 H 1.48497 * 109.46958 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46999 * 120.00146 * 3 2 1 6 6 H 1.48500 * 109.47347 * 240.00219 * 3 2 1 7 7 C 1.40458 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00323 * 179.97438 * 7 2 1 9 9 C 1.41033 * 119.99809 * 359.97438 * 7 2 1 10 10 O 1.21428 * 119.99852 * 359.97438 * 9 7 2 11 11 C 1.50700 * 119.99960 * 180.02562 * 9 7 2 12 12 H 1.09000 * 109.47038 * 359.33864 * 11 9 7 13 13 C 1.53008 * 109.46901 * 119.33735 * 11 9 7 14 14 C 1.52995 * 109.46994 * 59.99806 * 13 11 9 15 15 C 1.52996 * 109.46945 * 60.00108 * 14 13 11 16 16 C 1.53001 * 109.47349 * 299.99316 * 15 14 13 17 17 C 1.52995 * 109.46539 * 60.00436 * 16 15 14 18 18 H 1.08996 * 109.47640 * 60.00136 * 17 16 15 19 19 C 1.53008 * 109.46994 * 179.97438 * 17 16 15 20 20 F 1.39906 * 109.47041 * 179.97438 * 19 17 16 21 21 F 1.39891 * 109.46835 * 299.99910 * 19 17 16 22 22 F 1.39898 * 109.46844 * 59.99885 * 19 17 16 23 23 H 0.96996 * 120.00320 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.46751 * 180.02562 * 13 11 9 25 25 H 1.09003 * 109.46800 * 299.99741 * 13 11 9 26 26 H 1.09009 * 109.46859 * 179.97438 * 14 13 11 27 27 H 1.08996 * 109.47640 * 299.99784 * 14 13 11 28 28 H 1.09000 * 109.47655 * 60.00240 * 15 14 13 29 29 H 1.09006 * 109.46869 * 179.97438 * 15 14 13 30 30 H 1.08997 * 109.46930 * 179.97438 * 16 15 14 31 31 H 1.08991 * 109.47002 * 300.00683 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6178 0.0000 4 1 1.2742 2.7464 0.0006 5 1 3.0930 1.6964 1.2125 6 1 3.0929 1.6965 -1.2125 7 6 2.0075 -1.2164 -0.0005 8 1 3.0875 -1.2163 -0.0010 9 6 1.3024 -2.4378 -0.0005 10 8 0.0881 -2.4378 0.0004 11 6 2.0560 -3.7428 -0.0005 12 1 3.1276 -3.5436 -0.0124 13 6 1.6989 -4.5379 1.2570 14 6 0.1948 -4.8174 1.2737 15 6 -0.1872 -5.6269 0.0329 16 6 0.1697 -4.8319 -1.2246 17 6 1.6738 -4.5524 -1.2413 18 1 2.2189 -5.4963 -1.2413 19 6 2.0310 -3.7578 -2.4992 20 9 3.4064 -3.5017 -2.5141 21 9 1.6817 -4.4985 -3.6333 22 9 1.3315 -2.5463 -2.4997 23 1 -0.4850 0.8400 0.0004 24 1 2.2443 -5.4816 1.2572 25 1 1.9711 -3.9611 2.1410 26 1 -0.0595 -5.3842 2.1694 27 1 -0.3503 -3.8735 1.2737 28 1 0.3577 -6.5709 0.0329 29 1 -1.2588 -5.8264 0.0450 30 1 -0.1020 -5.4088 -2.1085 31 1 -0.3752 -3.8880 -1.2246 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129500441.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:19 Heat of formation + Delta-G solvation = -230.132067 kcal Electronic energy + Delta-G solvation = -20266.101419 eV Core-core repulsion = 16710.003638 eV Total energy + Delta-G solvation = -3556.097781 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.092 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.95256 -48.48337 -48.35335 -40.55225 -37.11076 -34.53523 -32.70811 -31.97627 -28.86092 -26.53096 -24.21215 -22.84748 -21.94738 -20.35351 -19.16562 -19.07765 -18.34816 -18.21232 -16.88594 -16.17047 -15.67976 -15.38371 -15.12033 -14.96360 -14.84451 -14.75049 -14.59317 -14.51981 -14.32190 -13.57916 -13.51937 -13.07221 -13.02757 -12.80777 -12.62612 -12.43348 -12.14533 -12.06266 -11.87138 -11.47195 -11.07805 -10.95541 -10.83072 -9.15186 -8.11068 -6.91574 1.35173 1.36609 1.47750 1.95240 2.23144 2.27781 2.97799 3.14583 3.27362 3.52691 3.90864 3.98267 4.24140 4.38669 4.41550 4.44742 4.60420 4.71194 4.71556 5.00478 5.06730 5.12477 5.27329 5.34850 5.36408 5.46229 5.58391 5.82535 6.08917 6.84871 6.96475 8.40833 8.65317 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.022941 B = 0.011162 C = 0.008947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.244362 B = 2507.997495 C = 3128.643866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.039 3.961 3 Si 0.969 3.031 4 H -0.270 1.270 5 H -0.254 1.254 6 H -0.263 1.263 7 C -0.562 4.562 8 H 0.067 0.933 9 C 0.364 3.636 10 O -0.551 6.551 11 C -0.132 4.132 12 H 0.075 0.925 13 C -0.088 4.088 14 C -0.134 4.134 15 C -0.091 4.091 16 C -0.130 4.130 17 C -0.102 4.102 18 H 0.134 0.866 19 C 0.442 3.558 20 F -0.190 7.190 21 F -0.190 7.190 22 F -0.183 7.183 23 H 0.276 0.724 24 H 0.088 0.912 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.044 -8.705 -0.883 9.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.181 4.181 3 Si 0.790 3.210 4 H -0.195 1.195 5 H -0.178 1.178 6 H -0.187 1.187 7 C -0.594 4.594 8 H 0.086 0.914 9 C 0.260 3.740 10 O -0.442 6.442 11 C -0.152 4.152 12 H 0.094 0.906 13 C -0.125 4.125 14 C -0.171 4.171 15 C -0.128 4.128 16 C -0.168 4.168 17 C -0.121 4.121 18 H 0.152 0.848 19 C 0.389 3.611 20 F -0.172 7.172 21 F -0.172 7.172 22 F -0.164 7.164 23 H 0.087 0.913 24 H 0.107 0.893 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.301 -8.647 -0.912 9.300 hybrid contribution 0.559 1.282 -0.417 1.459 sum 3.859 -7.365 -1.328 8.420 Atomic orbital electron populations 1.70026 1.09109 1.29071 1.33001 1.26875 0.95314 1.04401 0.91470 0.85483 0.78949 0.76451 0.80128 1.19456 1.17780 1.18713 1.21212 0.95020 0.93473 1.49646 0.91422 1.19624 0.88827 0.88483 0.77067 1.90234 1.16464 1.88575 1.48899 1.21659 1.00971 0.97629 0.94924 0.90643 1.21244 0.97016 0.99261 0.94985 1.21725 0.96337 1.01124 0.97952 1.21254 1.01193 0.97706 0.92684 1.21789 0.92525 1.02726 0.99712 1.22312 1.01280 0.99174 0.89355 0.84780 1.21079 0.74063 0.79231 0.86772 1.93110 1.32455 1.94734 1.96889 1.93103 1.91962 1.76759 1.55355 1.93278 1.79005 1.47644 1.96481 0.91344 0.89328 0.92928 0.91223 0.92436 0.89983 0.91618 0.90998 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -45.46 11.72 21.91 0.26 -45.20 16 2 C 0.04 2.10 5.50 85.43 0.47 2.57 16 3 Si 0.97 40.75 29.56 68.60 2.03 42.78 16 4 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 5 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.56 -30.97 8.72 23.50 0.20 -30.77 16 8 H 0.07 3.54 7.78 -2.91 -0.02 3.51 16 9 C 0.36 19.10 3.31 26.37 0.09 19.19 16 10 O -0.55 -31.94 9.73 -3.49 -0.03 -31.97 16 11 C -0.13 -5.37 2.41 -11.54 -0.03 -5.40 16 12 H 0.08 2.99 7.57 -2.39 -0.02 2.97 16 13 C -0.09 -3.01 5.44 30.60 0.17 -2.84 16 14 C -0.13 -4.70 5.63 30.59 0.17 -4.53 16 15 C -0.09 -2.78 5.92 30.59 0.18 -2.60 16 16 C -0.13 -4.72 4.66 30.59 0.14 -4.57 16 17 C -0.10 -3.64 2.05 -10.79 -0.02 -3.67 16 18 H 0.13 3.69 8.14 -2.39 -0.02 3.67 16 19 C 0.44 17.64 2.66 71.98 0.19 17.83 16 20 F -0.19 -7.43 16.80 44.97 0.76 -6.67 16 21 F -0.19 -6.86 16.80 44.97 0.76 -6.11 16 22 F -0.18 -9.08 13.87 44.97 0.62 -8.46 16 23 H 0.28 14.66 8.29 -92.71 -0.77 13.89 16 24 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 27 H 0.06 2.62 5.53 -2.39 -0.01 2.61 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.07 2.28 7.80 -2.39 -0.02 2.26 16 31 H 0.07 3.32 5.15 -2.39 -0.01 3.31 16 Total: -1.00 -64.88 257.08 7.10 -57.77 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 1.15 Total: 12.63 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 1.57 Total: -14.77 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.26 Total: -45.20 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.03 Total: -31.97 kcal Atomic # 9 Polarization: -23.37 SS G_CDS: 2.13 Total: -21.24 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -64.88 7.10 -57.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129500441.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.359 kcal (2) G-P(sol) polarization free energy of solvation -64.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds