Wall clock time and date at job start Mon Mar 30 2020 05:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38479 * 120.10502 * 2 1 4 4 O 1.35906 * 119.98341 * 359.97438 * 3 2 1 5 5 C 1.42909 * 116.99948 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.46679 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.46682 * 180.02562 * 6 5 4 8 8 H 1.07994 * 120.00360 * 359.97438 * 7 6 5 9 9 C 1.37884 * 120.00012 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99898 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00161 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47205 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47245 * 119.99681 * 11 9 7 14 14 H 1.48499 * 109.47276 * 239.99971 * 11 9 7 15 15 C 1.38823 * 120.03450 * 180.24777 * 3 2 1 16 16 C 1.38294 * 120.24486 * 359.45451 * 15 3 2 17 17 C 1.37949 * 120.21811 * 0.54456 * 16 15 3 18 18 C 1.39542 * 120.10671 * 179.97438 * 2 1 3 19 19 C 1.47740 * 120.11974 * 0.04683 * 18 2 1 20 20 O 1.21473 * 120.00592 * 6.19149 * 19 18 2 21 21 O 1.34717 * 119.99609 * 186.19747 * 19 18 2 22 22 H 1.08993 * 109.47196 * 96.57033 * 1 2 3 23 23 H 1.09000 * 109.47260 * 216.57314 * 1 2 3 24 24 H 1.09001 * 109.47245 * 336.56757 * 1 2 3 25 25 H 1.08995 * 109.46878 * 60.00241 * 5 4 3 26 26 H 1.09001 * 109.47156 * 299.99788 * 5 4 3 27 27 H 1.08998 * 109.47471 * 300.00167 * 6 5 4 28 28 H 1.09005 * 109.47378 * 60.00528 * 6 5 4 29 29 H 0.96988 * 119.99909 * 180.02562 * 10 9 7 30 30 H 1.07997 * 119.87183 * 179.70353 * 15 3 2 31 31 H 1.08004 * 119.89066 * 180.27075 * 16 15 3 32 32 H 1.07993 * 120.02326 * 179.70615 * 17 16 15 33 33 H 0.96697 * 116.99678 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2016 1.1980 0.0000 4 8 1.5239 2.3760 -0.0005 5 6 2.3041 3.5733 0.0001 6 6 1.3739 4.7881 0.0000 7 6 2.1966 6.0507 0.0000 8 1 3.2750 5.9926 0.0005 9 6 1.5725 7.2802 0.0005 10 7 0.2593 7.3511 0.0004 11 14 2.5923 8.8453 -0.0003 12 1 4.0356 8.4957 -0.0007 13 1 2.2752 9.6421 -1.2125 14 1 2.2769 9.6422 1.2125 15 6 3.5898 1.1963 -0.0052 16 6 4.2850 0.0008 0.0010 17 6 3.6035 -1.1986 0.0010 18 6 2.2070 -1.2072 0.0005 19 6 1.4733 -2.4895 0.0001 20 8 0.2640 -2.4975 -0.1142 21 8 2.1456 -3.6501 0.1265 22 1 -0.3633 -0.1176 -1.0208 23 1 -0.3634 -0.8253 0.6123 24 1 -0.3634 0.9429 0.4087 25 1 2.9336 3.5972 -0.8894 26 1 2.9322 3.5973 0.8906 27 1 0.7453 4.7644 -0.8902 28 1 0.7447 4.7640 0.8898 29 1 -0.1797 8.2159 0.0004 30 1 4.1289 2.1321 -0.0100 31 1 5.3650 0.0061 0.0013 32 1 4.1495 -2.1304 0.0011 33 1 1.6225 -4.4633 0.1204 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147926268.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:41 Heat of formation + Delta-G solvation = -116.027399 kcal Electronic energy + Delta-G solvation = -17455.119795 eV Core-core repulsion = 14445.826704 eV Total energy + Delta-G solvation = -3009.293091 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.71646 -39.52189 -37.13560 -36.27262 -33.46708 -32.61138 -30.85870 -29.71808 -26.94022 -25.35252 -24.09895 -21.91394 -21.54732 -20.25806 -18.46964 -17.68839 -16.51911 -16.00541 -15.84215 -15.54971 -15.44014 -15.34195 -14.51333 -13.96189 -13.37314 -13.16115 -12.98340 -12.36801 -12.26838 -12.16618 -11.92524 -11.64485 -11.47753 -11.36322 -10.94707 -10.83446 -10.58065 -10.14021 -9.94017 -9.71368 -9.32814 -8.96894 -8.48689 -7.94883 -6.13604 -4.18594 0.65490 1.44138 2.50025 2.81535 3.24473 3.31741 3.34933 3.75315 3.79458 4.38200 4.75634 4.86230 5.03314 5.09309 5.23026 5.32843 5.60666 5.75040 5.86622 5.94064 5.95620 6.00554 6.20983 6.27957 6.36537 6.48613 6.51562 6.60034 6.78097 7.44099 7.59364 7.73629 7.78014 7.96113 8.19242 8.87160 9.46081 10.97945 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.047765 B = 0.004063 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.060621 B = 6889.863665 C = 7448.709287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.056 4.056 3 C 0.132 3.868 4 O -0.308 6.308 5 C 0.063 3.937 6 C 0.025 3.975 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.061 3.939 10 N -0.888 5.888 11 Si 0.899 3.101 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.282 1.282 15 C -0.173 4.173 16 C -0.101 4.101 17 C -0.109 4.109 18 C -0.104 4.104 19 C 0.528 3.472 20 O -0.505 6.505 21 O -0.514 6.514 22 H 0.073 0.927 23 H 0.086 0.914 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.029 0.971 28 H 0.028 0.972 29 H 0.263 0.737 30 H 0.138 0.862 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.223 -18.314 0.240 19.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.057 4.057 3 C 0.084 3.916 4 O -0.221 6.221 5 C -0.011 4.011 6 C -0.012 4.012 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.142 4.142 10 N -0.526 5.526 11 Si 0.726 3.274 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.191 4.191 16 C -0.119 4.119 17 C -0.128 4.128 18 C -0.105 4.105 19 C 0.373 3.627 20 O -0.395 6.395 21 O -0.326 6.326 22 H 0.092 0.908 23 H 0.104 0.896 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.156 0.844 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 5.761 -17.763 0.212 18.675 hybrid contribution 0.491 0.485 -0.029 0.691 sum 6.252 -17.278 0.183 18.376 Atomic orbital electron populations 1.20929 0.89301 1.03605 1.03214 1.19312 0.97251 0.88944 1.00180 1.18778 0.90284 0.86926 0.95563 1.86201 1.36742 1.12249 1.86895 1.23404 0.95895 0.82027 0.99739 1.19133 0.94799 0.88274 0.98988 1.20996 0.93008 0.90224 1.52334 0.92294 1.24994 0.94994 0.99326 0.94860 1.69983 1.07898 1.25137 1.49624 0.86428 0.80285 0.82904 0.77748 1.19638 1.20818 1.20824 1.21676 0.93373 1.00015 1.04083 1.20882 1.00045 0.91416 0.99553 1.21187 0.92402 0.98790 1.00372 1.18537 0.93399 0.89048 1.09517 1.20872 0.85321 0.84158 0.72359 1.90863 1.15261 1.87570 1.45790 1.84567 1.45431 1.17094 1.85478 0.90844 0.89599 0.90887 0.92962 0.92974 0.95306 0.95314 0.92712 0.84419 0.85168 0.84796 0.73007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 8.57 36.01 0.31 -1.48 16 2 C -0.06 -0.88 5.93 -104.05 -0.62 -1.50 16 3 C 0.13 2.23 6.65 -39.28 -0.26 1.97 16 4 O -0.31 -6.10 9.07 -19.44 -0.18 -6.28 16 5 C 0.06 1.30 4.68 37.16 0.17 1.47 16 6 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 7 C -0.53 -14.43 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.06 1.69 5.46 -17.81 -0.10 1.60 16 10 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 11 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 C -0.17 -2.49 9.04 -39.34 -0.36 -2.85 16 16 C -0.10 -1.19 10.02 -39.67 -0.40 -1.59 16 17 C -0.11 -1.28 9.61 -39.16 -0.38 -1.66 16 18 C -0.10 -1.43 5.87 -105.00 -0.62 -2.04 16 19 C 0.53 6.62 8.20 34.61 0.28 6.90 16 20 O -0.51 -7.41 14.13 -19.25 -0.27 -7.69 16 21 O -0.51 -4.53 12.70 -40.54 -0.51 -5.04 16 22 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 23 H 0.09 1.31 5.86 -51.93 -0.30 1.01 16 24 H 0.07 1.20 7.34 -51.93 -0.38 0.82 16 25 H 0.05 1.01 7.64 -51.93 -0.40 0.62 16 26 H 0.05 1.01 7.67 -51.93 -0.40 0.61 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.14 1.89 6.28 -52.49 -0.33 1.56 16 31 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 32 H 0.13 1.26 7.62 -52.49 -0.40 0.86 16 33 H 0.41 1.68 9.11 45.56 0.42 2.09 16 LS Contribution 288.59 15.07 4.35 4.35 Total: -1.00 -31.45 288.59 -6.34 -37.79 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -3.03 Total: -0.24 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -2.42 Total: -13.43 kcal Atomic # 7 Polarization: -26.16 SS G_CDS: 0.74 Total: -25.42 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.96 Total: -19.01 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.45 -6.34 -37.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147926268.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.236 kcal (2) G-P(sol) polarization free energy of solvation -31.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds