Wall clock time and date at job start Mon Mar 30 2020 05:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38479 * 120.10502 * 2 1 4 4 O 1.35906 * 119.98341 * 359.97438 * 3 2 1 5 5 C 1.42909 * 116.99948 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.46679 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.46682 * 180.02562 * 6 5 4 8 8 H 1.07994 * 120.00360 * 359.97438 * 7 6 5 9 9 C 1.37884 * 120.00012 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99898 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00161 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47205 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47245 * 119.99681 * 11 9 7 14 14 H 1.48499 * 109.47276 * 239.99971 * 11 9 7 15 15 C 1.38823 * 120.03450 * 180.24777 * 3 2 1 16 16 C 1.38294 * 120.24486 * 359.45451 * 15 3 2 17 17 C 1.37949 * 120.21811 * 0.54456 * 16 15 3 18 18 C 1.39542 * 120.10671 * 179.97438 * 2 1 3 19 19 C 1.47740 * 120.11974 * 0.04683 * 18 2 1 20 20 O 1.21473 * 120.00592 * 6.19149 * 19 18 2 21 21 O 1.34717 * 119.99609 * 186.19747 * 19 18 2 22 22 H 1.08993 * 109.47196 * 96.57033 * 1 2 3 23 23 H 1.09000 * 109.47260 * 216.57314 * 1 2 3 24 24 H 1.09001 * 109.47245 * 336.56757 * 1 2 3 25 25 H 1.08995 * 109.46878 * 60.00241 * 5 4 3 26 26 H 1.09001 * 109.47156 * 299.99788 * 5 4 3 27 27 H 1.08998 * 109.47471 * 300.00167 * 6 5 4 28 28 H 1.09005 * 109.47378 * 60.00528 * 6 5 4 29 29 H 0.96988 * 119.99909 * 180.02562 * 10 9 7 30 30 H 1.07997 * 119.87183 * 179.70353 * 15 3 2 31 31 H 1.08004 * 119.89066 * 180.27075 * 16 15 3 32 32 H 1.07993 * 120.02326 * 179.70615 * 17 16 15 33 33 H 0.96697 * 116.99678 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2016 1.1980 0.0000 4 8 1.5239 2.3760 -0.0005 5 6 2.3041 3.5733 0.0001 6 6 1.3739 4.7881 0.0000 7 6 2.1966 6.0507 0.0000 8 1 3.2750 5.9926 0.0005 9 6 1.5725 7.2802 0.0005 10 7 0.2593 7.3511 0.0004 11 14 2.5923 8.8453 -0.0003 12 1 4.0356 8.4957 -0.0007 13 1 2.2752 9.6421 -1.2125 14 1 2.2769 9.6422 1.2125 15 6 3.5898 1.1963 -0.0052 16 6 4.2850 0.0008 0.0010 17 6 3.6035 -1.1986 0.0010 18 6 2.2070 -1.2072 0.0005 19 6 1.4733 -2.4895 0.0001 20 8 0.2640 -2.4975 -0.1142 21 8 2.1456 -3.6501 0.1265 22 1 -0.3633 -0.1176 -1.0208 23 1 -0.3634 -0.8253 0.6123 24 1 -0.3634 0.9429 0.4087 25 1 2.9336 3.5972 -0.8894 26 1 2.9322 3.5973 0.8906 27 1 0.7453 4.7644 -0.8902 28 1 0.7447 4.7640 0.8898 29 1 -0.1797 8.2159 0.0004 30 1 4.1289 2.1321 -0.0100 31 1 5.3650 0.0061 0.0013 32 1 4.1495 -2.1304 0.0011 33 1 1.6225 -4.4633 0.1204 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147926268.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:41 Heat of formation + Delta-G solvation = -136.206691 kcal Electronic energy + Delta-G solvation = -17455.994835 eV Core-core repulsion = 14445.826704 eV Total energy + Delta-G solvation = -3010.168131 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.76440 -40.67626 -38.37889 -37.15798 -35.47525 -33.78977 -32.44066 -31.19496 -28.10063 -27.12530 -25.34910 -23.39582 -22.79530 -21.54177 -19.62792 -18.78570 -18.27763 -17.25874 -17.08618 -16.86088 -16.67817 -16.52994 -16.30207 -14.99326 -14.70916 -14.38705 -14.32531 -14.12833 -13.74166 -13.40166 -13.28462 -12.95614 -12.73534 -12.65994 -12.52496 -12.49469 -12.10462 -11.63426 -11.57415 -11.39586 -11.19256 -10.62381 -10.03691 -9.16162 -8.26183 -6.39822 -0.39732 0.36189 1.42156 1.42887 1.50018 1.56247 1.87432 2.33320 2.56905 2.69487 3.08772 3.71367 3.84594 4.00856 4.06096 4.19623 4.28307 4.39773 4.55043 4.71831 4.72839 4.73929 4.78131 5.16598 5.23617 5.31473 5.35749 5.37909 5.47607 5.61480 5.64932 5.76204 6.06921 6.47465 6.75765 6.98532 7.30643 8.87178 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.047765 B = 0.004063 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.060621 B = 6889.863665 C = 7448.709287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.078 4.078 3 C 0.096 3.904 4 O -0.334 6.334 5 C 0.082 3.918 6 C 0.027 3.973 7 C -0.544 4.544 8 H 0.074 0.926 9 C 0.001 3.999 10 N -0.932 5.932 11 Si 0.976 3.024 12 H -0.255 1.255 13 H -0.278 1.278 14 H -0.278 1.278 15 C -0.175 4.175 16 C -0.090 4.090 17 C -0.090 4.090 18 C -0.113 4.113 19 C 0.535 3.465 20 O -0.534 6.534 21 O -0.498 6.498 22 H 0.068 0.932 23 H 0.088 0.912 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.065 0.935 27 H -0.003 1.003 28 H -0.003 1.003 29 H 0.266 0.734 30 H 0.144 0.856 31 H 0.171 0.829 32 H 0.168 0.832 33 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.429 -19.667 0.271 21.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.079 4.079 3 C 0.051 3.949 4 O -0.249 6.249 5 C 0.008 3.992 6 C -0.010 4.010 7 C -0.582 4.582 8 H 0.092 0.908 9 C -0.198 4.198 10 N -0.571 5.571 11 Si 0.800 3.200 12 H -0.179 1.179 13 H -0.204 1.204 14 H -0.204 1.204 15 C -0.193 4.193 16 C -0.108 4.108 17 C -0.108 4.108 18 C -0.114 4.114 19 C 0.380 3.620 20 O -0.426 6.426 21 O -0.312 6.312 22 H 0.087 0.913 23 H 0.106 0.894 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.075 0.925 30 H 0.162 0.838 31 H 0.188 0.812 32 H 0.186 0.814 33 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 8.989 -19.174 0.245 21.177 hybrid contribution -0.475 0.695 -0.034 0.843 sum 8.514 -18.479 0.210 20.347 Atomic orbital electron populations 1.20810 0.90195 1.02482 1.02842 1.19398 0.97051 0.89763 1.01663 1.19032 0.91636 0.85841 0.98410 1.86114 1.37536 1.13020 1.88209 1.22943 0.94385 0.80974 1.00916 1.18970 0.95009 0.91083 0.95957 1.21442 0.93877 0.90952 1.51892 0.90819 1.26051 0.96162 1.03361 0.94211 1.70132 1.10024 1.26226 1.50767 0.85233 0.79139 0.77905 0.77753 1.17883 1.20403 1.20400 1.21877 0.92210 1.01643 1.03603 1.21331 1.01931 0.90129 0.97389 1.21620 0.91447 1.00273 0.97463 1.18749 0.94546 0.88861 1.09281 1.20664 0.84766 0.84784 0.71748 1.90859 1.16488 1.88074 1.47186 1.84494 1.45140 1.17077 1.84506 0.91291 0.89355 0.92899 0.91664 0.91663 0.98449 0.98429 0.92510 0.83842 0.81153 0.81405 0.70326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.54 8.57 71.24 0.61 -2.93 16 2 C -0.08 -2.48 5.93 -19.49 -0.12 -2.60 16 3 C 0.10 3.28 6.65 22.47 0.15 3.43 16 4 O -0.33 -13.86 9.07 -92.49 -0.84 -14.70 16 5 C 0.08 3.44 4.68 71.98 0.34 3.78 16 6 C 0.03 1.46 5.34 29.85 0.16 1.62 16 7 C -0.54 -30.15 9.11 25.60 0.23 -29.91 16 8 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 9 C 0.00 0.03 5.46 84.66 0.46 0.49 16 10 N -0.93 -56.57 13.29 21.45 0.28 -56.29 16 11 Si 0.98 42.97 29.54 68.60 2.03 45.00 16 12 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 13 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 14 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 15 C -0.17 -4.71 9.04 22.42 0.20 -4.51 16 16 C -0.09 -1.77 10.02 22.21 0.22 -1.55 16 17 C -0.09 -1.76 9.61 22.54 0.22 -1.54 16 18 C -0.11 -2.90 5.87 -20.11 -0.12 -3.02 16 19 C 0.53 12.36 8.20 70.33 0.58 12.94 16 20 O -0.53 -15.32 14.13 19.92 0.28 -15.04 16 21 O -0.50 -7.01 12.70 -56.27 -0.71 -7.72 16 22 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 23 H 0.09 2.82 5.86 -2.39 -0.01 2.80 16 24 H 0.05 1.90 7.34 -2.39 -0.02 1.88 16 25 H 0.07 2.52 7.64 -2.39 -0.02 2.51 16 26 H 0.07 2.52 7.67 -2.39 -0.02 2.50 16 27 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 28 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 29 H 0.27 15.06 8.31 -92.72 -0.77 14.29 16 30 H 0.14 3.64 6.28 -2.91 -0.02 3.62 16 31 H 0.17 2.02 8.06 -2.91 -0.02 1.99 16 32 H 0.17 2.18 7.62 -2.91 -0.02 2.16 16 33 H 0.43 2.02 9.11 -74.06 -0.67 1.34 16 Total: -1.00 -70.62 288.59 4.44 -66.18 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: 0.46 Total: 6.37 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: 2.94 Total: -23.80 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.28 Total: -56.29 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -1.27 Total: -37.46 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -70.62 4.44 -66.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147926268.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.029 kcal (2) G-P(sol) polarization free energy of solvation -70.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds