Wall clock time and date at job start Mon Mar 30 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38132 * 120.03378 * 2 1 4 4 C 1.38268 * 120.06993 * 180.02562 * 3 2 1 5 5 C 1.38306 * 120.15339 * 359.97438 * 4 3 2 6 6 C 1.38083 * 120.07135 * 359.97438 * 5 4 3 7 7 N 1.48004 * 120.03332 * 179.97438 * 6 5 4 8 8 O 1.21801 * 120.00094 * 329.47531 * 7 6 5 9 9 O 1.21799 * 119.99965 * 149.19456 * 7 6 5 10 10 C 1.38887 * 120.04349 * 180.20588 * 2 1 3 11 11 N 1.39681 * 120.07148 * 0.04565 * 10 2 1 12 12 C 1.46903 * 110.99722 * 135.54478 * 11 10 2 13 13 C 1.46893 * 110.99932 * 259.50242 * 11 10 2 14 14 C 1.50699 * 109.46999 * 168.60381 * 13 11 10 15 15 H 1.08001 * 120.00405 * 0.02562 * 14 13 11 16 16 C 1.37883 * 119.99875 * 179.97438 * 14 13 11 17 17 N 1.31515 * 120.00101 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00034 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47333 * 90.00157 * 18 16 14 20 20 H 1.48497 * 109.47515 * 210.00239 * 18 16 14 21 21 H 1.48507 * 109.47303 * 330.00250 * 18 16 14 22 22 H 1.08998 * 109.47009 * 90.00466 * 1 2 3 23 23 H 1.09002 * 109.46884 * 210.00460 * 1 2 3 24 24 H 1.08998 * 109.47605 * 330.00500 * 1 2 3 25 25 H 1.07992 * 119.96616 * 359.97438 * 3 2 1 26 26 H 1.07998 * 119.92107 * 179.97438 * 4 3 2 27 27 H 1.07996 * 119.96176 * 180.02562 * 5 4 3 28 28 H 1.08999 * 109.47396 * 26.99801 * 12 11 10 29 29 H 1.09004 * 109.46359 * 146.99203 * 12 11 10 30 30 H 1.08995 * 109.47322 * 266.98679 * 12 11 10 31 31 H 1.09005 * 109.47195 * 288.60426 * 13 11 10 32 32 H 1.09000 * 109.47398 * 48.60196 * 13 11 10 33 33 H 0.96995 * 120.00154 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1958 0.0000 4 6 3.5810 1.1967 -0.0005 5 6 4.2765 0.0013 -0.0005 6 6 3.5915 -1.1977 0.0005 7 7 4.3366 -2.4765 0.0000 8 8 5.4277 -2.5454 -0.5370 9 8 3.8610 -3.4587 0.5409 10 6 2.2023 -1.2023 -0.0043 11 7 1.5063 -2.4133 -0.0096 12 6 2.0935 -3.3536 -0.9735 13 6 1.4598 -2.9996 1.3364 14 6 0.4781 -4.1428 1.3527 15 1 -0.0574 -4.4077 0.4529 16 6 0.2642 -4.8514 2.5160 17 7 0.9166 -4.5292 3.6116 18 14 -0.9532 -6.2681 2.5363 19 1 -0.2504 -7.5297 2.1905 20 1 -1.5495 -6.3890 3.8909 21 1 -2.0276 -6.0118 1.5436 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5137 25 1 1.6584 2.1311 -0.0004 26 1 4.1191 2.1331 -0.0010 27 1 5.3565 0.0055 -0.0005 28 1 3.1509 -3.1250 -1.1063 29 1 1.9862 -4.3718 -0.5992 30 1 1.5790 -3.2621 -1.9300 31 1 2.4497 -3.3668 1.6073 32 1 1.1454 -2.2405 2.0527 33 1 0.7658 -5.0274 4.4300 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158634368.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:32 Heat of formation + Delta-G solvation = 71.322392 kcal Electronic energy + Delta-G solvation = -18955.986997 eV Core-core repulsion = 15987.110754 eV Total energy + Delta-G solvation = -2968.876244 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.21317 -39.56241 -36.91361 -35.48209 -32.96852 -32.64478 -30.44144 -27.52104 -26.94298 -26.31906 -24.76254 -22.66202 -21.44224 -20.54019 -18.49984 -18.19822 -17.50881 -16.43234 -16.07517 -15.59742 -14.91209 -14.45197 -13.96781 -13.62118 -13.20018 -13.02186 -12.57043 -12.11983 -12.05720 -11.88298 -11.63235 -11.35434 -10.97948 -10.92451 -10.78249 -10.70134 -10.29811 -10.05463 -10.02756 -9.40068 -9.19757 -8.68521 -8.42374 -7.55075 -6.02017 -4.02704 0.29569 1.17522 1.58899 1.83760 3.33740 3.39616 3.42256 3.46216 4.30638 4.53156 4.57936 4.73902 5.01728 5.09255 5.27862 5.35018 5.57086 5.67818 5.75254 5.90478 5.93899 6.09979 6.18333 6.28146 6.39620 6.63070 6.72564 6.76448 7.11009 7.44005 7.73330 7.82694 8.02287 8.23700 8.42175 9.02270 9.59039 11.08858 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.024723 B = 0.008019 C = 0.006778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.282177 B = 3490.658810 C = 4129.926677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.075 4.075 3 C -0.071 4.071 4 C -0.137 4.137 5 C -0.060 4.060 6 C -0.081 4.081 7 N 0.035 4.965 8 O -0.186 6.186 9 O -0.126 6.126 10 C 0.185 3.815 11 N -0.502 5.502 12 C 0.026 3.974 13 C 0.180 3.820 14 C -0.507 4.507 15 H 0.063 0.937 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.070 0.930 23 H 0.093 0.907 24 H 0.062 0.938 25 H 0.138 0.862 26 H 0.139 0.861 27 H 0.140 0.860 28 H 0.014 0.986 29 H 0.098 0.902 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.025 0.975 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.830 11.760 -7.127 14.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.077 4.077 3 C -0.090 4.090 4 C -0.156 4.156 5 C -0.080 4.080 6 C -0.167 4.167 7 N 0.548 4.452 8 O -0.395 6.395 9 O -0.342 6.342 10 C 0.087 3.913 11 N -0.222 5.222 12 C -0.121 4.121 13 C 0.059 3.941 14 C -0.546 4.546 15 H 0.081 0.919 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.089 0.911 23 H 0.112 0.888 24 H 0.081 0.919 25 H 0.156 0.844 26 H 0.157 0.843 27 H 0.158 0.842 28 H 0.032 0.968 29 H 0.117 0.883 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.013 12.345 -7.076 14.371 hybrid contribution 0.480 -1.225 0.317 1.353 sum 2.493 11.120 -6.759 13.250 Atomic orbital electron populations 1.20690 0.88949 1.03915 1.02642 1.19916 0.97717 0.90102 1.00002 1.21356 0.94121 0.97952 0.95562 1.20973 0.94227 0.97043 1.03330 1.20777 1.00976 0.89966 0.96292 1.21810 0.93437 0.83900 1.17570 1.43641 1.00303 1.03107 0.98171 1.94460 1.07976 1.91222 1.45827 1.94684 1.69825 1.27325 1.42330 1.19199 0.86503 0.94972 0.90667 1.60136 1.47874 1.01299 1.12872 1.22985 0.95052 0.99209 0.94855 1.20474 0.99805 0.94268 0.79588 1.21018 1.23155 1.14007 0.96372 0.91851 1.24931 0.96378 0.97559 0.95421 1.69958 1.41848 1.40824 1.00693 0.86483 0.81159 0.82493 0.77173 1.20585 1.21310 1.19880 0.91097 0.88793 0.91939 0.84438 0.84288 0.84206 0.96791 0.88337 0.93510 0.93079 0.95708 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 9.76 36.00 0.35 -1.14 16 2 C -0.08 -1.17 5.90 -104.42 -0.62 -1.79 16 3 C -0.07 -0.85 9.70 -39.61 -0.38 -1.23 16 4 C -0.14 -1.57 10.04 -39.55 -0.40 -1.96 16 5 C -0.06 -0.87 9.62 -39.61 -0.38 -1.25 16 6 C -0.08 -1.51 6.13 -79.76 -0.49 -2.00 16 7 N 0.04 0.73 2.63 34.06 0.09 0.82 16 8 O -0.19 -3.71 18.79 -29.46 -0.55 -4.27 16 9 O -0.13 -2.97 11.91 -29.46 -0.35 -3.32 16 10 C 0.18 3.53 4.68 -83.79 -0.39 3.14 16 11 N -0.50 -10.94 3.65 -180.33 -0.66 -11.60 16 12 C 0.03 0.55 8.08 60.07 0.49 1.04 16 13 C 0.18 4.66 4.34 -4.98 -0.02 4.64 16 14 C -0.51 -14.02 8.16 -34.44 -0.28 -14.31 16 15 H 0.06 1.73 7.66 -52.49 -0.40 1.33 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 18 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.09 1.65 7.47 -51.93 -0.39 1.26 16 24 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 25 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 26 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 27 H 0.14 1.76 7.90 -52.49 -0.41 1.35 16 28 H 0.01 0.29 3.82 -59.48 -0.23 0.06 16 29 H 0.10 2.25 6.64 -51.93 -0.34 1.91 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.05 1.45 4.80 -52.27 -0.25 1.20 16 32 H 0.02 0.69 8.04 -51.93 -0.42 0.27 16 33 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 LS Contribution 278.12 15.07 4.19 4.19 Total: -1.00 -30.93 278.12 -7.48 -38.41 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -3.69 Total: -1.72 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -2.22 Total: -13.31 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.17 Total: -36.49 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.90 Total: -7.59 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.93 -7.48 -38.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158634368.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.734 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds