Wall clock time and date at job start Mon Mar 30 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38132 * 120.03378 * 2 1 4 4 C 1.38268 * 120.06993 * 180.02562 * 3 2 1 5 5 C 1.38306 * 120.15339 * 359.97438 * 4 3 2 6 6 C 1.38083 * 120.07135 * 359.97438 * 5 4 3 7 7 N 1.48004 * 120.03332 * 179.97438 * 6 5 4 8 8 O 1.21801 * 120.00094 * 329.47531 * 7 6 5 9 9 O 1.21799 * 119.99965 * 149.19456 * 7 6 5 10 10 C 1.38887 * 120.04349 * 180.20588 * 2 1 3 11 11 N 1.39681 * 120.07148 * 0.04565 * 10 2 1 12 12 C 1.46903 * 110.99722 * 135.54478 * 11 10 2 13 13 C 1.46893 * 110.99932 * 259.50242 * 11 10 2 14 14 C 1.50699 * 109.46999 * 168.60381 * 13 11 10 15 15 H 1.08001 * 120.00405 * 0.02562 * 14 13 11 16 16 C 1.37883 * 119.99875 * 179.97438 * 14 13 11 17 17 N 1.31515 * 120.00101 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00034 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47333 * 90.00157 * 18 16 14 20 20 H 1.48497 * 109.47515 * 210.00239 * 18 16 14 21 21 H 1.48507 * 109.47303 * 330.00250 * 18 16 14 22 22 H 1.08998 * 109.47009 * 90.00466 * 1 2 3 23 23 H 1.09002 * 109.46884 * 210.00460 * 1 2 3 24 24 H 1.08998 * 109.47605 * 330.00500 * 1 2 3 25 25 H 1.07992 * 119.96616 * 359.97438 * 3 2 1 26 26 H 1.07998 * 119.92107 * 179.97438 * 4 3 2 27 27 H 1.07996 * 119.96176 * 180.02562 * 5 4 3 28 28 H 1.08999 * 109.47396 * 26.99801 * 12 11 10 29 29 H 1.09004 * 109.46359 * 146.99203 * 12 11 10 30 30 H 1.08995 * 109.47322 * 266.98679 * 12 11 10 31 31 H 1.09005 * 109.47195 * 288.60426 * 13 11 10 32 32 H 1.09000 * 109.47398 * 48.60196 * 13 11 10 33 33 H 0.96995 * 120.00154 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1958 0.0000 4 6 3.5810 1.1967 -0.0005 5 6 4.2765 0.0013 -0.0005 6 6 3.5915 -1.1977 0.0005 7 7 4.3366 -2.4765 0.0000 8 8 5.4277 -2.5454 -0.5370 9 8 3.8610 -3.4587 0.5409 10 6 2.2023 -1.2023 -0.0043 11 7 1.5063 -2.4133 -0.0096 12 6 2.0935 -3.3536 -0.9735 13 6 1.4598 -2.9996 1.3364 14 6 0.4781 -4.1428 1.3527 15 1 -0.0574 -4.4077 0.4529 16 6 0.2642 -4.8514 2.5160 17 7 0.9166 -4.5292 3.6116 18 14 -0.9532 -6.2681 2.5363 19 1 -0.2504 -7.5297 2.1905 20 1 -1.5495 -6.3890 3.8909 21 1 -2.0276 -6.0118 1.5436 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5137 25 1 1.6584 2.1311 -0.0004 26 1 4.1191 2.1331 -0.0010 27 1 5.3565 0.0055 -0.0005 28 1 3.1509 -3.1250 -1.1063 29 1 1.9862 -4.3718 -0.5992 30 1 1.5790 -3.2621 -1.9300 31 1 2.4497 -3.3668 1.6073 32 1 1.1454 -2.2405 2.0527 33 1 0.7658 -5.0274 4.4300 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158634368.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:32 Heat of formation + Delta-G solvation = 52.195240 kcal Electronic energy + Delta-G solvation = -18956.816413 eV Core-core repulsion = 15987.110754 eV Total energy + Delta-G solvation = -2969.705659 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.73703 -40.89095 -38.44925 -37.06436 -34.72951 -34.15630 -31.81799 -29.43088 -28.37057 -27.63709 -26.46959 -24.37334 -22.79083 -22.04096 -19.88193 -19.74880 -19.05214 -18.44618 -17.51742 -16.95419 -16.69599 -15.77726 -15.58894 -15.00804 -14.74784 -14.39654 -14.09369 -13.75427 -13.36360 -13.14148 -12.95502 -12.85896 -12.82150 -12.70338 -12.53399 -12.28439 -12.06856 -11.91618 -11.79675 -11.34891 -10.60850 -10.39371 -9.97972 -9.23401 -8.19275 -6.27600 -1.14120 0.02604 0.20857 0.41875 1.40225 1.42685 1.53185 2.31531 2.40974 2.92814 3.14343 3.37155 3.72002 3.92921 3.99664 4.02888 4.17299 4.37599 4.51079 4.69499 4.84450 4.86384 4.90507 4.92731 5.09161 5.12002 5.23509 5.40481 5.53263 5.59669 5.71106 5.96517 6.03608 6.49285 6.50389 6.85688 7.38507 8.92343 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.024723 B = 0.008019 C = 0.006778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.282177 B = 3490.658810 C = 4129.926677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.086 4.086 3 C -0.048 4.048 4 C -0.109 4.109 5 C -0.063 4.063 6 C -0.107 4.107 7 N 0.040 4.960 8 O -0.146 6.146 9 O -0.218 6.218 10 C 0.136 3.864 11 N -0.501 5.501 12 C 0.037 3.963 13 C 0.200 3.800 14 C -0.519 4.519 15 H 0.060 0.940 16 C 0.004 3.996 17 N -0.932 5.932 18 Si 0.970 3.030 19 H -0.276 1.276 20 H -0.280 1.280 21 H -0.263 1.263 22 H 0.084 0.916 23 H 0.049 0.951 24 H 0.096 0.904 25 H 0.190 0.810 26 H 0.195 0.805 27 H 0.161 0.839 28 H 0.014 0.986 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.025 0.975 32 H -0.006 1.006 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.803 15.115 -8.315 17.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.088 4.088 3 C -0.066 4.066 4 C -0.127 4.127 5 C -0.083 4.083 6 C -0.192 4.192 7 N 0.547 4.453 8 O -0.371 6.371 9 O -0.412 6.412 10 C 0.038 3.962 11 N -0.221 5.221 12 C -0.110 4.110 13 C 0.078 3.922 14 C -0.558 4.558 15 H 0.078 0.922 16 C -0.194 4.194 17 N -0.572 5.572 18 Si 0.794 3.206 19 H -0.202 1.202 20 H -0.205 1.205 21 H -0.188 1.188 22 H 0.103 0.897 23 H 0.068 0.932 24 H 0.115 0.885 25 H 0.207 0.793 26 H 0.212 0.788 27 H 0.178 0.822 28 H 0.033 0.967 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.012 0.988 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.866 15.619 -8.195 17.737 hybrid contribution 0.677 -1.953 0.563 2.142 sum 2.543 13.666 -7.632 15.858 Atomic orbital electron populations 1.20673 0.88405 1.03377 1.03363 1.20279 0.98432 0.90189 0.99851 1.21959 0.94624 0.98157 0.91873 1.21661 0.94192 0.97666 0.99190 1.21275 1.02244 0.89270 0.95463 1.22121 0.93431 0.83516 1.20162 1.44066 1.00177 1.03880 0.97177 1.94378 1.07979 1.91286 1.43432 1.94724 1.71024 1.29177 1.46303 1.19474 0.87158 0.94779 0.94761 1.59953 1.49231 1.02315 1.10586 1.22824 0.95350 0.97657 0.95212 1.19949 0.97673 0.92956 0.81671 1.21327 1.23306 1.14755 0.96365 0.92152 1.25859 0.98295 1.00320 0.94945 1.70095 1.43537 1.42265 1.01345 0.85377 0.78804 0.78797 0.77577 1.20161 1.20517 1.18754 0.89723 0.93236 0.88486 0.79313 0.78810 0.82171 0.96737 0.91360 0.91753 0.95804 0.98781 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.72 9.76 71.23 0.70 -2.03 16 2 C -0.09 -2.48 5.90 -19.74 -0.12 -2.60 16 3 C -0.05 -0.88 9.70 22.25 0.22 -0.66 16 4 C -0.11 -1.83 10.04 22.29 0.22 -1.61 16 5 C -0.06 -1.61 9.62 22.25 0.21 -1.39 16 6 C -0.11 -3.94 6.13 36.51 0.22 -3.72 16 7 N 0.04 1.71 2.63 -46.17 -0.12 1.59 16 8 O -0.15 -5.84 18.79 18.89 0.35 -5.48 16 9 O -0.22 -11.16 11.91 18.89 0.23 -10.93 16 10 C 0.14 5.24 4.68 38.21 0.18 5.42 16 11 N -0.50 -23.13 3.65 -724.45 -2.65 -25.78 16 12 C 0.04 1.66 8.08 127.69 1.03 2.69 16 13 C 0.20 11.21 4.34 85.56 0.37 11.58 16 14 C -0.52 -30.47 8.16 25.60 0.21 -30.26 16 15 H 0.06 3.48 7.66 -2.91 -0.02 3.45 16 16 C 0.00 0.23 5.46 84.66 0.46 0.69 16 17 N -0.93 -57.86 13.29 21.45 0.28 -57.57 16 18 Si 0.97 45.64 29.54 68.60 2.03 47.67 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 22 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.05 1.78 7.47 -2.39 -0.02 1.77 16 24 H 0.10 1.87 8.09 -2.39 -0.02 1.85 16 25 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 26 H 0.19 1.31 8.06 -2.91 -0.02 1.28 16 27 H 0.16 3.40 7.90 -2.91 -0.02 3.38 16 28 H 0.01 0.65 3.82 -17.31 -0.07 0.58 16 29 H 0.07 3.41 6.64 -2.38 -0.02 3.40 16 30 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.02 1.51 4.80 -7.78 -0.04 1.47 16 32 H -0.01 -0.35 8.04 -2.39 -0.02 -0.37 16 33 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -74.95 278.12 4.88 -70.07 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: 1.04 Total: 2.32 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 3.71 Total: -21.89 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -2.48 Total: -81.76 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: 0.58 Total: -16.41 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -74.95 4.88 -70.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158634368.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.268 kcal (2) G-P(sol) polarization free energy of solvation -74.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds