Wall clock time and date at job start Mon Mar 30 2020 06:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99554 * 2 1 4 4 H 1.48497 * 109.47246 * 269.99818 * 3 2 1 5 5 H 1.48495 * 109.47388 * 30.00482 * 3 2 1 6 6 H 1.48508 * 109.46666 * 150.00106 * 3 2 1 7 7 C 1.37870 * 120.00263 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00091 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47341 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47177 * 179.97438 * 10 9 7 12 12 S 1.81401 * 109.46913 * 180.02562 * 11 10 9 13 13 C 1.81400 * 102.99934 * 180.02562 * 12 11 10 14 14 C 1.52995 * 109.47284 * 180.02562 * 13 12 11 15 15 C 1.50707 * 109.47301 * 179.97438 * 14 13 12 16 16 C 1.38238 * 119.99792 * 90.00016 * 15 14 13 17 17 C 1.38235 * 119.99712 * 179.97438 * 16 15 14 18 18 C 1.38234 * 120.00220 * 359.97124 * 17 16 15 19 19 C 1.38233 * 120.00037 * 0.28719 * 18 17 16 20 20 C 1.38234 * 120.00179 * 269.97953 * 15 14 13 21 21 H 0.97000 * 120.00171 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46912 * 59.99675 * 9 7 2 23 23 H 1.09004 * 109.46728 * 299.99765 * 9 7 2 24 24 H 1.09005 * 109.47189 * 59.99488 * 10 9 7 25 25 H 1.09000 * 109.46957 * 300.00335 * 10 9 7 26 26 H 1.08997 * 109.47034 * 60.00261 * 11 10 9 27 27 H 1.08996 * 109.47071 * 300.00048 * 11 10 9 28 28 H 1.08995 * 109.47401 * 59.99853 * 13 12 11 29 29 H 1.09004 * 109.47054 * 299.99991 * 13 12 11 30 30 H 1.09005 * 109.47610 * 60.00151 * 14 13 12 31 31 H 1.09000 * 109.47256 * 299.99493 * 14 13 12 32 32 H 1.08005 * 120.00068 * 359.97438 * 16 15 14 33 33 H 1.07999 * 119.99770 * 179.97438 * 17 16 15 34 34 H 1.08002 * 119.99744 * 180.02562 * 18 17 16 35 35 H 1.07998 * 120.00395 * 179.72811 * 19 18 17 36 36 H 1.07999 * 119.99968 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9870 0.0001 12 16 2.6593 -6.3657 0.0009 13 6 1.5811 -7.8245 0.0008 14 6 2.4380 -9.0920 0.0020 15 6 1.5422 -10.3040 0.0026 16 6 1.1319 -10.8607 -1.1943 17 6 0.3107 -11.9727 -1.1938 18 6 -0.0997 -12.5283 0.0036 19 6 0.3063 -11.9684 1.2005 20 6 1.1313 -10.8592 1.2000 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8898 24 1 2.8721 -3.6042 0.8894 25 1 2.8720 -3.6042 -0.8905 26 1 0.8535 -5.0450 -0.8896 27 1 0.8541 -5.0445 0.8903 28 1 0.9523 -7.8115 -0.8894 29 1 0.9516 -7.8111 0.8906 30 1 3.0665 -9.1049 0.8925 31 1 3.0677 -9.1057 -0.8875 32 1 1.4529 -10.4268 -2.1299 33 1 -0.0103 -12.4074 -2.1289 34 1 -0.7410 -13.3974 0.0039 35 1 -0.0179 -12.3999 2.1360 36 1 1.4525 -10.4247 2.1351 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160191957.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:09 Heat of formation + Delta-G solvation = -10.555397 kcal Electronic energy + Delta-G solvation = -14534.246566 eV Core-core repulsion = 12108.113050 eV Total energy + Delta-G solvation = -2426.133517 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.109 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.51514 -34.46962 -34.35458 -32.01617 -31.12853 -29.59871 -27.48762 -24.43960 -23.20975 -22.81351 -21.15406 -20.15372 -17.05434 -16.46127 -15.87271 -15.69974 -15.31084 -14.68980 -14.53695 -14.00123 -13.90396 -13.58193 -13.51805 -12.72300 -12.55057 -12.24646 -11.87101 -11.74273 -11.53198 -11.13866 -11.08372 -10.87527 -10.84656 -10.48599 -9.78394 -9.73589 -9.30874 -9.16476 -9.11577 -8.92481 -8.36618 -7.43263 -6.01580 -4.04103 1.07598 1.15819 1.92371 2.90086 3.32272 3.38266 3.42290 3.53974 4.45600 4.57904 4.61662 4.76534 4.89502 4.89609 4.96650 5.27411 5.28254 5.34355 5.41469 5.52098 5.60549 5.65910 5.74574 5.83270 5.91266 6.14064 6.21953 6.26893 6.40504 6.56416 6.72779 6.76223 7.02644 7.63707 7.75957 7.97473 8.39396 9.02433 9.60134 11.09825 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.059348 B = 0.002812 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.683856 B = 9955.727978 C =10101.715943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.095 4.095 11 C -0.070 4.070 12 S -0.284 6.284 13 C -0.080 4.080 14 C -0.064 4.064 15 C -0.077 4.077 16 C -0.115 4.115 17 C -0.119 4.119 18 C -0.126 4.126 19 C -0.119 4.119 20 C -0.115 4.115 21 H 0.261 0.739 22 H 0.017 0.983 23 H 0.017 0.983 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.696 -24.163 0.008 24.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.134 4.134 11 C -0.218 4.218 12 S -0.056 6.056 13 C -0.229 4.229 14 C -0.102 4.102 15 C -0.078 4.078 16 C -0.133 4.133 17 C -0.137 4.137 18 C -0.144 4.144 19 C -0.137 4.137 20 C -0.133 4.133 21 H 0.070 0.930 22 H 0.036 0.964 23 H 0.036 0.964 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.656 -24.007 0.014 24.064 hybrid contribution -1.060 0.878 -0.010 1.376 sum 0.597 -23.129 0.004 23.137 Atomic orbital electron populations 1.69964 1.06082 1.26672 1.50855 1.25025 0.94869 0.99318 0.95261 0.86567 0.79856 0.83305 0.78141 1.20614 1.21204 1.19810 1.21225 0.93135 0.90863 1.50632 0.92529 1.19106 0.93819 0.90883 0.97384 1.21468 0.99137 0.91187 1.01584 1.23605 0.98709 0.95168 1.04319 1.86823 1.19030 1.01592 1.98143 1.23285 1.00093 0.94576 1.04927 1.20326 0.96212 0.89399 1.04253 1.19877 0.98247 0.96393 0.93327 1.21118 0.98150 0.96320 0.97742 1.21158 0.98062 0.96406 0.98123 1.21158 1.00401 1.00195 0.92682 1.21158 0.98044 0.96416 0.98129 1.21117 0.98115 0.96361 0.97737 0.92964 0.96440 0.96442 0.92384 0.92381 0.90589 0.90591 0.90273 0.90278 0.90017 0.90015 0.85913 0.86089 0.86230 0.86087 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.70 4.97 -27.88 -0.14 0.56 16 10 C -0.09 -2.00 5.16 -26.74 -0.14 -2.14 16 11 C -0.07 -1.23 5.94 37.16 0.22 -1.01 16 12 S -0.28 -4.42 21.74 -107.50 -2.34 -6.75 16 13 C -0.08 -0.97 5.92 37.15 0.22 -0.75 16 14 C -0.06 -0.65 5.35 -27.88 -0.15 -0.80 16 15 C -0.08 -0.76 5.13 -104.62 -0.54 -1.30 16 16 C -0.12 -1.08 9.70 -39.58 -0.38 -1.46 16 17 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 18 C -0.13 -1.04 10.05 -39.58 -0.40 -1.43 16 19 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 20 C -0.12 -1.08 9.70 -39.58 -0.38 -1.46 16 21 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.08 0.94 8.14 -51.92 -0.42 0.51 16 30 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 31 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 32 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 35 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 36 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 320.12 15.07 4.82 4.82 Total: -1.00 -30.38 320.12 -10.57 -40.95 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -5.88 Total: -3.22 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: -2.89 Total: -26.27 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.74 Total: -26.31 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -4.42 SS G_CDS: -2.34 Total: -6.75 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.38 -10.57 -40.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160191957.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.398 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds