Wall clock time and date at job start Mon Mar 30 2020 06:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99554 * 2 1 4 4 H 1.48497 * 109.47246 * 269.99818 * 3 2 1 5 5 H 1.48495 * 109.47388 * 30.00482 * 3 2 1 6 6 H 1.48508 * 109.46666 * 150.00106 * 3 2 1 7 7 C 1.37870 * 120.00263 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00091 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47341 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47177 * 179.97438 * 10 9 7 12 12 S 1.81401 * 109.46913 * 180.02562 * 11 10 9 13 13 C 1.81400 * 102.99934 * 180.02562 * 12 11 10 14 14 C 1.52995 * 109.47284 * 180.02562 * 13 12 11 15 15 C 1.50707 * 109.47301 * 179.97438 * 14 13 12 16 16 C 1.38238 * 119.99792 * 90.00016 * 15 14 13 17 17 C 1.38235 * 119.99712 * 179.97438 * 16 15 14 18 18 C 1.38234 * 120.00220 * 359.97124 * 17 16 15 19 19 C 1.38233 * 120.00037 * 0.28719 * 18 17 16 20 20 C 1.38234 * 120.00179 * 269.97953 * 15 14 13 21 21 H 0.97000 * 120.00171 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46912 * 59.99675 * 9 7 2 23 23 H 1.09004 * 109.46728 * 299.99765 * 9 7 2 24 24 H 1.09005 * 109.47189 * 59.99488 * 10 9 7 25 25 H 1.09000 * 109.46957 * 300.00335 * 10 9 7 26 26 H 1.08997 * 109.47034 * 60.00261 * 11 10 9 27 27 H 1.08996 * 109.47071 * 300.00048 * 11 10 9 28 28 H 1.08995 * 109.47401 * 59.99853 * 13 12 11 29 29 H 1.09004 * 109.47054 * 299.99991 * 13 12 11 30 30 H 1.09005 * 109.47610 * 60.00151 * 14 13 12 31 31 H 1.09000 * 109.47256 * 299.99493 * 14 13 12 32 32 H 1.08005 * 120.00068 * 359.97438 * 16 15 14 33 33 H 1.07999 * 119.99770 * 179.97438 * 17 16 15 34 34 H 1.08002 * 119.99744 * 180.02562 * 18 17 16 35 35 H 1.07998 * 120.00395 * 179.72811 * 19 18 17 36 36 H 1.07999 * 119.99968 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9870 0.0001 12 16 2.6593 -6.3657 0.0009 13 6 1.5811 -7.8245 0.0008 14 6 2.4380 -9.0920 0.0020 15 6 1.5422 -10.3040 0.0026 16 6 1.1319 -10.8607 -1.1943 17 6 0.3107 -11.9727 -1.1938 18 6 -0.0997 -12.5283 0.0036 19 6 0.3063 -11.9684 1.2005 20 6 1.1313 -10.8592 1.2000 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8898 24 1 2.8721 -3.6042 0.8894 25 1 2.8720 -3.6042 -0.8905 26 1 0.8535 -5.0450 -0.8896 27 1 0.8541 -5.0445 0.8903 28 1 0.9523 -7.8115 -0.8894 29 1 0.9516 -7.8111 0.8906 30 1 3.0665 -9.1049 0.8925 31 1 3.0677 -9.1057 -0.8875 32 1 1.4529 -10.4268 -2.1299 33 1 -0.0103 -12.4074 -2.1289 34 1 -0.7410 -13.3974 0.0039 35 1 -0.0179 -12.3999 2.1360 36 1 1.4525 -10.4247 2.1351 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160191957.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:08 Heat of formation + Delta-G solvation = -24.136810 kcal Electronic energy + Delta-G solvation = -14534.835500 eV Core-core repulsion = 12108.113050 eV Total energy + Delta-G solvation = -2426.722451 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.109 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.17094 -36.37821 -35.16444 -34.05834 -31.76234 -30.38003 -29.42434 -25.70728 -24.77950 -23.45509 -22.21635 -21.65698 -18.56893 -17.71239 -17.08189 -16.57170 -16.56407 -16.11972 -16.09216 -14.99603 -14.96660 -14.53172 -14.29961 -14.22238 -13.95208 -13.59149 -13.32189 -13.02902 -12.77006 -12.71359 -12.39681 -12.38728 -11.92261 -11.78553 -11.65974 -11.37491 -11.11568 -10.90095 -10.57506 -9.81425 -9.63158 -8.68479 -8.22236 -6.33516 0.36167 0.50867 0.74600 1.40084 1.41379 1.52768 1.65177 2.40445 2.87425 3.11126 3.83372 3.90165 4.01542 4.03456 4.10931 4.12668 4.19217 4.31761 4.51644 4.56682 4.57703 4.65289 4.80074 4.87901 4.95261 4.98458 5.11962 5.16830 5.18793 5.47520 5.58282 5.63835 5.66404 5.71510 5.80777 6.13046 6.20989 6.82180 7.35838 8.89659 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.059348 B = 0.002812 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.683856 B = 9955.727978 C =10101.715943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.030 3.970 10 C -0.081 4.081 11 C -0.067 4.067 12 S -0.294 6.294 13 C -0.067 4.067 14 C -0.055 4.055 15 C -0.090 4.090 16 C -0.128 4.128 17 C -0.127 4.127 18 C -0.131 4.131 19 C -0.127 4.127 20 C -0.128 4.128 21 H 0.265 0.735 22 H -0.004 1.004 23 H -0.004 1.004 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.130 0.870 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.162 -25.195 -0.001 25.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.009 4.009 10 C -0.119 4.119 11 C -0.215 4.215 12 S -0.066 6.066 13 C -0.216 4.216 14 C -0.094 4.094 15 C -0.092 4.092 16 C -0.146 4.146 17 C -0.145 4.145 18 C -0.149 4.149 19 C -0.145 4.145 20 C -0.146 4.146 21 H 0.073 0.927 22 H 0.014 0.986 23 H 0.014 0.986 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.148 0.852 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.131 -25.044 0.003 25.134 hybrid contribution -1.248 1.073 -0.007 1.646 sum 0.883 -23.971 -0.004 23.987 Atomic orbital electron populations 1.70087 1.07765 1.27892 1.51551 1.25978 0.95808 1.03376 0.94599 0.85431 0.78648 0.78317 0.78577 1.19666 1.20565 1.18819 1.21667 0.93576 0.92307 1.50791 0.92253 1.18986 0.94186 0.92453 0.95236 1.21171 0.97987 0.91471 1.01297 1.23339 0.98806 0.94760 1.04617 1.86791 1.19282 1.02312 1.98190 1.23351 0.99668 0.93206 1.05333 1.20240 0.96043 0.88676 1.04425 1.19868 0.98908 0.96518 0.93914 1.21318 0.98506 0.96847 0.97907 1.21453 0.97698 0.96147 0.99219 1.21500 1.00232 1.00681 0.92459 1.21453 0.97683 0.96156 0.99225 1.21316 0.98473 0.96888 0.97901 0.92657 0.98551 0.98558 0.92604 0.92576 0.90339 0.90350 0.89865 0.89873 0.89862 0.89857 0.85241 0.84272 0.84112 0.84272 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.06 13.29 21.44 0.28 -56.77 16 2 C 0.00 0.01 5.46 84.65 0.46 0.48 16 3 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.55 -31.57 9.11 25.60 0.23 -31.34 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.61 4.97 29.85 0.15 1.76 16 10 C -0.08 -3.44 5.16 30.59 0.16 -3.28 16 11 C -0.07 -2.36 5.94 71.98 0.43 -1.93 16 12 S -0.29 -8.86 21.74 -56.49 -1.23 -10.09 16 13 C -0.07 -1.53 5.92 71.98 0.43 -1.11 16 14 C -0.06 -1.06 5.35 29.85 0.16 -0.90 16 15 C -0.09 -1.67 5.13 -19.86 -0.10 -1.77 16 16 C -0.13 -2.20 9.70 22.27 0.22 -1.99 16 17 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 18 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 19 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 20 C -0.13 -2.21 9.70 22.27 0.22 -1.99 16 21 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 22 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 23 H 0.00 -0.23 8.14 -2.38 -0.02 -0.24 16 24 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 25 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 27 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.08 1.56 8.08 -2.38 -0.02 1.54 16 31 H 0.08 1.56 8.09 -2.39 -0.02 1.55 16 32 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 33 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 34 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 35 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 36 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -64.57 320.12 5.12 -59.45 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 1.02 Total: 7.85 kcal Atomic # 6 Polarization: -50.13 SS G_CDS: 3.02 Total: -47.11 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.28 Total: -56.77 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.23 Total: -10.09 kcal Total: -64.57 5.12 -59.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160191957.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.316 kcal (2) G-P(sol) polarization free energy of solvation -64.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds