Wall clock time and date at job start Mon Mar 30 2020 06:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 6 6 C 1.36943 * 119.99752 * 274.72222 * 5 3 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 3 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 3 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47294 * 90.00155 * 10 8 6 12 12 H 1.48499 * 109.47218 * 210.00015 * 10 8 6 13 13 H 1.48496 * 109.47166 * 329.99846 * 10 8 6 14 14 C 1.50701 * 109.47247 * 185.00035 * 3 2 1 15 15 C 1.38261 * 119.99753 * 279.72702 * 14 3 2 16 16 C 1.38212 * 119.99700 * 179.76623 * 15 14 3 17 17 C 1.38253 * 120.00074 * 0.50196 * 16 15 14 18 18 C 1.38214 * 120.00132 * 359.75197 * 17 16 15 19 19 N 1.48020 * 120.00050 * 179.97438 * 18 17 16 20 20 O 1.21804 * 119.99956 * 180.02562 * 19 18 17 21 21 O 1.21796 * 120.00060 * 0.02562 * 19 18 17 22 22 C 1.38212 * 120.00288 * 99.99783 * 14 3 2 23 23 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 24 24 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 26 26 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 27 27 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 28 28 H 0.97001 * 120.00384 * 95.00578 * 5 3 2 29 29 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 30 30 H 1.07994 * 119.99863 * 359.97438 * 15 14 3 31 31 H 1.08000 * 120.00141 * 180.23151 * 16 15 14 32 32 H 1.08005 * 120.00369 * 179.72518 * 17 16 15 33 33 H 1.08001 * 119.99476 * 0.02562 * 22 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 7 1.6525 2.0974 1.2518 6 6 0.4178 2.6784 1.3668 7 1 -0.2719 2.6498 0.5362 8 6 0.0527 3.3040 2.5509 9 7 0.8936 3.3393 3.5630 10 14 -1.6317 4.0959 2.7081 11 1 -2.6015 3.0979 3.2266 12 1 -1.5534 5.2440 3.6467 13 1 -2.0795 4.5755 1.3759 14 6 3.5420 1.4443 -0.1238 15 6 4.3277 1.2086 0.9892 16 6 5.7050 1.2054 0.8746 17 6 6.2973 1.4482 -0.3508 18 6 5.5120 1.6890 -1.4624 19 7 6.1462 1.9496 -2.7742 20 8 5.4542 2.1622 -3.7537 21 8 7.3601 1.9513 -2.8742 22 6 4.1342 1.6870 -1.3488 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.2720 2.1232 1.9978 29 1 0.6383 3.7761 4.3906 30 1 3.8650 1.0236 1.9473 31 1 6.3187 1.0176 1.7433 32 1 7.3737 1.4502 -0.4394 33 1 3.5205 1.8759 -2.2173 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181527560.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:22 Heat of formation + Delta-G solvation = 23.916153 kcal Electronic energy + Delta-G solvation = -17892.374727 eV Core-core repulsion = 14921.442794 eV Total energy + Delta-G solvation = -2970.931932 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.06606 -39.59813 -36.48773 -36.19856 -32.71959 -31.81619 -31.10190 -29.76021 -26.45288 -26.01265 -23.23709 -22.56896 -22.04438 -20.31911 -18.58659 -18.52046 -17.43377 -17.40044 -16.39039 -15.52628 -14.77602 -14.49862 -13.98863 -13.80377 -13.60616 -13.02667 -12.74233 -12.17960 -12.08092 -11.70892 -11.47620 -11.15307 -11.07494 -11.06345 -10.97452 -10.86536 -10.58961 -10.36482 -10.18230 -9.69726 -9.44882 -9.18609 -8.89295 -7.18322 -5.93944 -3.23041 -0.02248 1.06504 1.50839 1.52660 3.33679 3.39909 3.41308 3.43567 4.38721 4.51271 4.56384 4.94384 5.02105 5.07854 5.23171 5.37370 5.55699 5.61380 5.75185 5.81905 5.87849 6.01700 6.13586 6.25687 6.34433 6.44180 6.48764 6.50643 6.65407 6.85464 7.12915 7.56079 7.74756 8.23211 9.35367 9.86179 10.21589 11.28409 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.028694 B = 0.005345 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.595743 B = 5237.027336 C = 5398.695859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.210 3.790 4 H 0.064 0.936 5 N -0.718 5.718 6 C -0.240 4.240 7 H 0.076 0.924 8 C -0.009 4.009 9 N -0.931 5.931 10 Si 0.907 3.093 11 H -0.288 1.288 12 H -0.291 1.291 13 H -0.281 1.281 14 C -0.064 4.064 15 C -0.052 4.052 16 C -0.117 4.117 17 C -0.070 4.070 18 C -0.047 4.047 19 N 0.033 4.967 20 O -0.166 6.166 21 O -0.172 6.172 22 C -0.054 4.054 23 H 0.042 0.958 24 H 0.035 0.965 25 H 0.086 0.914 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.384 0.616 29 H 0.257 0.743 30 H 0.147 0.853 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.487 -6.111 -5.726 11.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C 0.100 3.900 4 H 0.082 0.918 5 N -0.360 5.360 6 C -0.371 4.371 7 H 0.094 0.906 8 C -0.206 4.206 9 N -0.579 5.579 10 Si 0.737 3.263 11 H -0.215 1.215 12 H -0.217 1.217 13 H -0.206 1.206 14 C -0.066 4.066 15 C -0.070 4.070 16 C -0.136 4.136 17 C -0.089 4.089 18 C -0.130 4.130 19 N 0.551 4.449 20 O -0.382 6.382 21 O -0.387 6.387 22 C -0.074 4.074 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.105 0.895 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.219 0.781 29 H 0.067 0.933 30 H 0.165 0.835 31 H 0.162 0.838 32 H 0.165 0.835 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.005 -6.132 -5.105 10.617 hybrid contribution -0.474 0.575 0.082 0.750 sum 6.530 -5.557 -5.023 9.938 Atomic orbital electron populations 1.21793 0.95331 0.99909 1.03508 1.22160 0.97220 0.97759 1.00086 1.19324 0.85225 0.93191 0.92279 0.91841 1.42483 1.17067 1.66097 1.10380 1.19217 0.91534 1.28002 0.98307 0.90623 1.24749 0.98359 1.01137 0.96351 1.69642 1.35358 1.48732 1.04141 0.86199 0.83725 0.78842 0.77500 1.21544 1.21722 1.20609 1.20582 0.98645 0.96138 0.91267 1.21632 0.93250 0.92358 0.99779 1.21207 0.95160 1.00557 0.96659 1.20953 1.01063 0.96151 0.90745 1.21069 0.93758 1.14872 0.83341 1.43691 1.00871 0.97276 1.03063 1.94528 1.62880 1.52232 1.28551 1.94496 0.96609 1.55589 1.91957 1.20938 0.91414 0.95447 0.99606 0.93863 0.94619 0.89497 0.93815 0.92463 0.78072 0.93317 0.83527 0.83785 0.83523 0.83240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.18 37.16 0.34 -2.15 16 2 C -0.13 -2.13 5.59 -26.73 -0.15 -2.28 16 3 C 0.21 3.72 2.64 -69.08 -0.18 3.53 16 4 H 0.06 1.16 7.94 -51.93 -0.41 0.74 16 5 N -0.72 -15.90 5.01 -54.55 -0.27 -16.17 16 6 C -0.24 -6.00 7.76 -15.06 -0.12 -6.12 16 7 H 0.08 1.84 7.33 -52.49 -0.38 1.46 16 8 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 9 N -0.93 -26.16 13.06 55.49 0.72 -25.44 16 10 Si 0.91 21.15 29.55 -169.99 -5.02 16.13 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 C -0.06 -1.00 4.96 -104.62 -0.52 -1.51 16 15 C -0.05 -0.73 9.06 -39.58 -0.36 -1.09 16 16 C -0.12 -1.37 10.05 -39.59 -0.40 -1.77 16 17 C -0.07 -0.86 9.56 -39.58 -0.38 -1.24 16 18 C -0.05 -0.69 6.85 -79.95 -0.55 -1.24 16 19 N 0.03 0.53 4.45 33.96 0.15 0.68 16 20 O -0.17 -2.75 18.45 -29.46 -0.54 -3.29 16 21 O -0.17 -2.73 18.45 -29.46 -0.54 -3.27 16 22 C -0.05 -0.80 9.18 -39.59 -0.36 -1.16 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.09 1.73 6.01 -51.93 -0.31 1.42 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.38 8.92 6.05 -40.82 -0.25 8.67 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.15 2.11 6.90 -52.49 -0.36 1.75 16 31 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 32 H 0.15 1.53 7.61 -52.48 -0.40 1.13 16 33 H 0.15 2.07 7.59 -52.49 -0.40 1.67 16 LS Contribution 288.99 15.07 4.35 4.35 Total: -1.00 -28.06 288.99 -7.69 -35.74 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -3.76 Total: 6.63 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -2.77 Total: -15.36 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.60 Total: -40.93 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -1.09 Total: -6.57 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.06 -7.69 -35.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181527560.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.660 kcal (2) G-P(sol) polarization free energy of solvation -28.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds