Wall clock time and date at job start Mon Mar 30 2020 06:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 6 6 C 1.36943 * 119.99752 * 274.72222 * 5 3 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 3 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 3 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47294 * 90.00155 * 10 8 6 12 12 H 1.48499 * 109.47218 * 210.00015 * 10 8 6 13 13 H 1.48496 * 109.47166 * 329.99846 * 10 8 6 14 14 C 1.50701 * 109.47247 * 185.00035 * 3 2 1 15 15 C 1.38261 * 119.99753 * 279.72702 * 14 3 2 16 16 C 1.38212 * 119.99700 * 179.76623 * 15 14 3 17 17 C 1.38253 * 120.00074 * 0.50196 * 16 15 14 18 18 C 1.38214 * 120.00132 * 359.75197 * 17 16 15 19 19 N 1.48020 * 120.00050 * 179.97438 * 18 17 16 20 20 O 1.21804 * 119.99956 * 180.02562 * 19 18 17 21 21 O 1.21796 * 120.00060 * 0.02562 * 19 18 17 22 22 C 1.38212 * 120.00288 * 99.99783 * 14 3 2 23 23 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 24 24 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 26 26 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 27 27 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 28 28 H 0.97001 * 120.00384 * 95.00578 * 5 3 2 29 29 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 30 30 H 1.07994 * 119.99863 * 359.97438 * 15 14 3 31 31 H 1.08000 * 120.00141 * 180.23151 * 16 15 14 32 32 H 1.08005 * 120.00369 * 179.72518 * 17 16 15 33 33 H 1.08001 * 119.99476 * 0.02562 * 22 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 7 1.6525 2.0974 1.2518 6 6 0.4178 2.6784 1.3668 7 1 -0.2719 2.6498 0.5362 8 6 0.0527 3.3040 2.5509 9 7 0.8936 3.3393 3.5630 10 14 -1.6317 4.0959 2.7081 11 1 -2.6015 3.0979 3.2266 12 1 -1.5534 5.2440 3.6467 13 1 -2.0795 4.5755 1.3759 14 6 3.5420 1.4443 -0.1238 15 6 4.3277 1.2086 0.9892 16 6 5.7050 1.2054 0.8746 17 6 6.2973 1.4482 -0.3508 18 6 5.5120 1.6890 -1.4624 19 7 6.1462 1.9496 -2.7742 20 8 5.4542 2.1622 -3.7537 21 8 7.3601 1.9513 -2.8742 22 6 4.1342 1.6870 -1.3488 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.2720 2.1232 1.9978 29 1 0.6383 3.7761 4.3906 30 1 3.8650 1.0236 1.9473 31 1 6.3187 1.0176 1.7433 32 1 7.3737 1.4502 -0.4394 33 1 3.5205 1.8759 -2.2173 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181527560.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:22 Heat of formation + Delta-G solvation = 9.279819 kcal Electronic energy + Delta-G solvation = -17893.009406 eV Core-core repulsion = 14921.442794 eV Total energy + Delta-G solvation = -2971.566611 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.26567 -40.76205 -37.74876 -37.62399 -34.48525 -32.93528 -32.29234 -31.48087 -27.72875 -27.43467 -24.97496 -23.67637 -23.28079 -21.65373 -19.84558 -19.79409 -19.13674 -18.63143 -17.51521 -16.95506 -16.25104 -15.90530 -15.44460 -15.03144 -14.98623 -14.55774 -14.11995 -13.44026 -13.25268 -13.00050 -12.95443 -12.82630 -12.70363 -12.44268 -12.31386 -12.21785 -12.12303 -11.94008 -11.73194 -11.39765 -10.99123 -10.53040 -10.11164 -9.03656 -7.93828 -5.20362 -1.20271 0.00093 0.34250 0.36663 1.48625 1.49961 1.56726 2.33242 2.56884 3.31737 3.41865 3.52847 3.82170 3.89315 3.95266 4.06529 4.17633 4.40407 4.43389 4.59563 4.69921 4.83237 4.87736 5.04283 5.09217 5.15946 5.18144 5.27357 5.48795 5.54471 5.57449 5.68926 6.28111 6.50413 7.36536 8.05390 8.30957 9.29489 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.028694 B = 0.005345 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.595743 B = 5237.027336 C = 5398.695859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C 0.208 3.792 4 H 0.057 0.943 5 N -0.728 5.728 6 C -0.223 4.223 7 H 0.079 0.921 8 C -0.071 4.071 9 N -0.967 5.967 10 Si 0.960 3.040 11 H -0.288 1.288 12 H -0.301 1.301 13 H -0.272 1.272 14 C -0.078 4.078 15 C -0.057 4.057 16 C -0.101 4.101 17 C -0.058 4.058 18 C -0.059 4.059 19 N 0.034 4.966 20 O -0.196 6.196 21 O -0.164 6.164 22 C -0.057 4.057 23 H 0.047 0.953 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.377 0.623 29 H 0.249 0.751 30 H 0.141 0.859 31 H 0.183 0.817 32 H 0.173 0.827 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.598 -6.959 -6.201 12.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C 0.100 3.900 4 H 0.075 0.925 5 N -0.369 5.369 6 C -0.355 4.355 7 H 0.097 0.903 8 C -0.263 4.263 9 N -0.618 5.618 10 Si 0.790 3.210 11 H -0.216 1.216 12 H -0.228 1.228 13 H -0.197 1.197 14 C -0.080 4.080 15 C -0.075 4.075 16 C -0.119 4.119 17 C -0.077 4.077 18 C -0.142 4.142 19 N 0.549 4.451 20 O -0.405 6.405 21 O -0.382 6.382 22 C -0.077 4.077 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.211 0.789 29 H 0.058 0.942 30 H 0.159 0.841 31 H 0.200 0.800 32 H 0.190 0.810 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 8.073 -6.998 -5.670 12.095 hybrid contribution -0.706 0.752 0.176 1.046 sum 7.367 -6.247 -5.494 11.112 Atomic orbital electron populations 1.21736 0.95820 1.00841 1.01942 1.22034 0.96678 0.96582 1.01130 1.19403 0.87120 0.93525 0.89955 0.92536 1.42605 1.16141 1.66272 1.11896 1.19505 0.92416 1.25791 0.97759 0.90322 1.25373 1.01196 1.03074 0.96647 1.69766 1.36842 1.50760 1.04445 0.85330 0.80687 0.77610 0.77330 1.21563 1.22758 1.19737 1.20287 0.97277 0.98224 0.92199 1.21718 0.94497 0.92318 0.99008 1.21555 0.94232 0.98525 0.97611 1.21335 1.02246 0.94124 0.89956 1.21211 0.93886 1.15917 0.83218 1.43871 1.00828 0.96980 1.03424 1.94534 1.62934 1.53756 1.29260 1.94473 0.96759 1.54853 1.92070 1.20886 0.91840 0.95521 0.99407 0.93372 0.92533 0.92942 0.91311 0.92717 0.78873 0.94165 0.84117 0.80009 0.80969 0.83127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.74 9.18 71.98 0.66 -4.08 16 2 C -0.12 -3.83 5.59 30.60 0.17 -3.66 16 3 C 0.21 7.24 2.64 44.24 0.12 7.36 16 4 H 0.06 2.04 7.94 -2.39 -0.02 2.02 16 5 N -0.73 -32.25 5.01 -326.50 -1.64 -33.89 16 6 C -0.22 -11.19 7.76 84.03 0.65 -10.54 16 7 H 0.08 3.82 7.33 -2.91 -0.02 3.80 16 8 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 9 N -0.97 -55.35 13.06 21.65 0.28 -55.07 16 10 Si 0.96 43.99 29.55 68.60 2.03 46.02 16 11 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 13 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 14 C -0.08 -2.32 4.96 -19.86 -0.10 -2.41 16 15 C -0.06 -1.49 9.06 22.27 0.20 -1.29 16 16 C -0.10 -2.00 10.05 22.27 0.22 -1.78 16 17 C -0.06 -1.22 9.56 22.27 0.21 -1.01 16 18 C -0.06 -1.59 6.85 36.37 0.25 -1.35 16 19 N 0.03 1.02 4.45 -46.46 -0.21 0.81 16 20 O -0.20 -6.35 18.45 18.88 0.35 -6.00 16 21 O -0.16 -4.82 18.45 18.89 0.35 -4.47 16 22 C -0.06 -1.60 9.18 22.27 0.20 -1.39 16 23 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.05 2.07 6.01 -2.39 -0.01 2.05 16 26 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.38 17.66 6.05 -92.71 -0.56 17.10 16 29 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 30 H 0.14 3.90 6.90 -2.91 -0.02 3.88 16 31 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.17 2.82 7.61 -2.91 -0.02 2.80 16 33 H 0.15 4.09 7.59 -2.91 -0.02 4.07 16 Total: -1.00 -60.10 288.99 4.79 -55.31 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.57 Total: 20.76 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 3.06 Total: -23.46 kcal Atomic # 7 Polarization: -86.58 SS G_CDS: -1.56 Total: -88.14 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.70 Total: -10.48 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -60.10 4.79 -55.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181527560.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.590 kcal (2) G-P(sol) polarization free energy of solvation -60.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds