Wall clock time and date at job start Mon Mar 30 2020 06:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47205 * 2 1 4 4 H 1.08995 * 109.47182 * 304.99836 * 3 2 1 5 5 C 1.50697 * 109.46908 * 184.99646 * 3 2 1 6 6 H 1.07999 * 120.00271 * 239.99784 * 5 3 2 7 7 C 1.37880 * 119.99831 * 60.00532 * 5 3 2 8 8 N 1.31516 * 120.00102 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99771 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47128 * 89.99600 * 9 7 5 11 11 H 1.48500 * 109.46776 * 209.99608 * 9 7 5 12 12 H 1.48495 * 109.46880 * 329.99666 * 9 7 5 13 13 O 1.42902 * 109.47062 * 64.99764 * 3 2 1 14 14 C 1.34994 * 116.99924 * 269.99851 * 13 3 2 15 15 O 1.21709 * 120.00177 * 0.02562 * 14 13 3 16 16 C 1.41301 * 119.99945 * 180.02562 * 14 13 3 17 17 C 1.35750 * 119.99654 * 179.97438 * 16 14 13 18 18 C 1.41537 * 119.99539 * 179.97438 * 17 16 14 19 19 C 1.37996 * 126.10712 * 180.02562 * 18 17 16 20 20 C 1.40281 * 106.52696 * 179.79219 * 19 18 17 21 21 C 1.35180 * 107.21045 * 0.37136 * 20 19 18 22 22 O 1.34013 * 109.03835 * 359.61773 * 21 20 19 23 23 H 1.09005 * 109.47088 * 300.00426 * 1 2 3 24 24 H 1.09007 * 109.46961 * 59.99868 * 1 2 3 25 25 H 1.08993 * 109.47058 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47016 * 239.99611 * 2 1 3 27 27 H 1.09003 * 109.46558 * 119.99857 * 2 1 3 28 28 H 0.96998 * 119.99442 * 180.02562 * 8 7 5 29 29 H 1.07996 * 119.99779 * 0.02562 * 16 14 13 30 30 H 1.07996 * 120.00567 * 0.02562 * 17 16 14 31 31 H 1.08006 * 126.73535 * 0.05153 * 19 18 17 32 32 H 1.07999 * 126.40245 * 180.23317 * 20 19 18 33 33 H 1.08002 * 125.48440 * 179.88992 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1237 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8783 -1.2279 8 7 3.4063 0.3366 -2.1729 9 14 6.0050 0.8811 -1.3816 10 1 6.5549 -0.3503 -0.7600 11 1 6.3831 0.9222 -2.8171 12 1 6.5570 2.0736 -0.6900 13 8 1.6620 2.0814 1.2210 14 6 0.4721 2.7188 1.2363 15 8 -0.2249 2.7305 0.2386 16 6 0.0358 3.3725 2.4106 17 6 -1.1605 4.0139 2.4257 18 6 -1.5978 4.6682 3.6021 19 6 -2.7849 5.3545 3.7576 20 6 -2.8007 5.8305 5.0771 21 6 -1.6472 5.4335 5.6594 22 8 -0.9280 4.7327 4.7719 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8294 -0.0618 -2.9494 29 1 0.6545 3.3625 3.2957 30 1 -1.7790 4.0243 1.5405 31 1 -3.5531 5.4937 3.0113 32 1 -3.5866 6.4084 5.5406 33 1 -1.3543 5.6433 6.6776 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188091309.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:51 Heat of formation + Delta-G solvation = -62.744665 kcal Electronic energy + Delta-G solvation = -17580.866461 eV Core-core repulsion = 14573.883882 eV Total energy + Delta-G solvation = -3006.982579 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.69316 -39.74761 -36.20068 -34.04907 -33.43926 -33.18357 -31.31656 -29.21976 -27.26879 -24.69444 -23.00880 -22.05411 -21.10014 -19.90021 -19.07034 -17.70223 -16.99518 -16.55435 -16.23153 -15.46025 -15.27572 -14.82758 -14.49447 -13.27164 -13.17512 -12.99634 -12.81928 -12.63140 -12.24128 -12.01164 -11.46995 -11.27777 -11.16933 -10.95740 -10.66351 -10.61239 -10.26277 -10.07730 -9.81115 -9.65769 -9.30971 -8.74275 -8.41322 -8.06974 -6.14879 -4.21808 0.40268 1.99622 2.59840 2.79615 3.26843 3.32263 3.36374 3.69333 3.84542 4.36720 4.66629 4.73939 4.92988 5.16972 5.18293 5.48953 5.58048 5.70118 5.89854 5.99785 6.25985 6.28552 6.32646 6.39789 6.51273 6.90203 6.91817 7.00267 7.21238 7.28372 7.65424 7.78273 7.97576 8.20093 8.66411 8.93737 9.43519 10.91939 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.039231 B = 0.004347 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.548623 B = 6439.382085 C = 6876.095629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.216 3.784 4 H 0.047 0.953 5 C -0.521 4.521 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.344 6.344 14 C 0.483 3.517 15 O -0.517 6.517 16 C -0.162 4.162 17 C -0.009 4.009 18 C 0.002 3.998 19 C -0.171 4.171 20 C -0.219 4.219 21 C -0.025 4.025 22 O -0.164 6.164 23 H 0.031 0.969 24 H 0.053 0.947 25 H 0.032 0.968 26 H 0.108 0.892 27 H 0.041 0.959 28 H 0.266 0.734 29 H 0.138 0.862 30 H 0.162 0.838 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.389 8.059 12.614 18.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C 0.163 3.837 4 H 0.064 0.936 5 C -0.559 4.559 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.260 6.260 14 C 0.330 3.670 15 O -0.410 6.410 16 C -0.181 4.181 17 C -0.028 4.028 18 C -0.047 4.047 19 C -0.190 4.190 20 C -0.238 4.238 21 C -0.094 4.094 22 O -0.059 6.059 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.126 0.874 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.156 0.844 30 H 0.179 0.821 31 H 0.174 0.826 32 H 0.170 0.830 33 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -10.230 7.794 12.157 17.697 hybrid contribution 0.702 0.011 -0.129 0.713 sum -9.529 7.805 12.028 17.216 Atomic orbital electron populations 1.21866 0.98427 0.98960 1.00737 1.22045 0.92605 0.99527 1.03315 1.20277 0.95087 0.88914 0.79462 0.93573 1.21066 0.89705 1.38895 1.06207 0.91370 1.24889 0.99181 0.94802 0.95073 1.69896 1.35315 1.37863 1.09492 0.86295 0.84007 0.78660 0.77301 1.20378 1.20994 1.19646 1.86216 1.33829 1.62310 1.43606 1.19643 0.81427 0.77756 0.88131 1.90837 1.55272 1.58933 1.35988 1.21646 0.97639 1.00169 0.98641 1.20669 0.95901 0.92533 0.93685 1.19884 0.93445 1.05127 0.86242 1.22340 0.97829 1.00950 0.97903 1.21764 0.99971 1.06722 0.95371 1.24307 0.92243 0.97427 0.95438 1.84138 1.43950 1.57897 1.19892 0.94981 0.92763 0.94863 0.87414 0.94039 0.92447 0.84425 0.82086 0.82626 0.83042 0.77812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.55 37.16 0.32 -2.87 16 2 C -0.14 -3.47 5.48 -26.73 -0.15 -3.62 16 3 C 0.22 5.85 2.22 -27.88 -0.06 5.79 16 4 H 0.05 1.38 7.11 -51.93 -0.37 1.01 16 5 C -0.52 -14.83 8.89 -34.44 -0.31 -15.13 16 6 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.34 11.29 55.43 0.63 -24.71 16 9 Si 0.91 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 O -0.34 -8.42 9.68 -41.30 -0.40 -8.82 16 14 C 0.48 10.32 6.10 31.90 0.19 10.52 16 15 O -0.52 -11.93 13.23 -19.43 -0.26 -12.19 16 16 C -0.16 -2.69 9.55 -39.31 -0.38 -3.06 16 17 C -0.01 -0.13 9.39 -39.22 -0.37 -0.50 16 18 C 0.00 0.03 6.84 -38.41 -0.26 -0.23 16 19 C -0.17 -1.77 10.90 -38.90 -0.42 -2.19 16 20 C -0.22 -1.92 10.87 -39.90 -0.43 -2.35 16 21 C -0.02 -0.22 12.06 29.64 0.36 0.14 16 22 O -0.16 -2.00 10.18 4.68 0.05 -1.95 16 23 H 0.03 0.69 6.05 -51.93 -0.31 0.37 16 24 H 0.05 1.26 7.75 -51.93 -0.40 0.86 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.11 2.95 5.95 -51.93 -0.31 2.64 16 27 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.14 2.10 7.72 -52.49 -0.41 1.69 16 30 H 0.16 2.14 7.46 -52.49 -0.39 1.75 16 31 H 0.16 1.28 8.06 -52.48 -0.42 0.86 16 32 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.21 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 289.99 15.07 4.37 4.37 Total: -1.00 -31.50 289.99 -6.09 -37.59 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -3.85 Total: 1.35 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -1.60 Total: -11.88 kcal Atomic # 7 Polarization: -25.34 SS G_CDS: 0.63 Total: -24.71 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.61 Total: -22.96 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.50 -6.09 -37.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188091309.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.159 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds