Wall clock time and date at job start Mon Mar 30 2020 06:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38254 * 119.99834 * 2 1 4 4 C 1.38222 * 119.99920 * 179.78942 * 3 2 1 5 5 C 1.38258 * 119.99551 * 0.46928 * 4 3 2 6 6 C 1.38216 * 120.00160 * 359.76035 * 5 4 3 7 7 C 1.50701 * 120.00078 * 179.97438 * 6 5 4 8 8 O 1.42906 * 109.46665 * 40.02800 * 7 6 5 9 9 Si 1.63099 * 113.99733 * 149.99884 * 8 7 6 10 10 C 1.86294 * 109.47240 * 59.99884 * 9 8 7 11 11 C 1.86303 * 109.46922 * 179.97438 * 9 8 7 12 12 C 1.86303 * 109.47112 * 299.99730 * 9 8 7 13 13 C 1.50698 * 109.47304 * 280.03077 * 7 6 5 14 14 N 1.27943 * 119.99701 * 234.99734 * 13 7 6 15 15 Si 1.86793 * 120.00302 * 54.99579 * 13 7 6 16 16 H 1.48502 * 109.46984 * 0.02562 * 15 13 7 17 17 H 1.48496 * 109.47100 * 119.99906 * 15 13 7 18 18 H 1.48499 * 109.47269 * 240.00120 * 15 13 7 19 19 C 1.38213 * 119.99863 * 180.27755 * 2 1 3 20 20 H 1.09001 * 109.46953 * 269.72186 * 1 2 3 21 21 H 1.09000 * 109.47318 * 29.71784 * 1 2 3 22 22 H 1.09000 * 109.47161 * 149.72414 * 1 2 3 23 23 H 1.07997 * 120.00151 * 0.02562 * 3 2 1 24 24 H 1.07997 * 120.00140 * 180.25074 * 4 3 2 25 25 H 1.08002 * 120.00008 * 179.78995 * 5 4 3 26 26 H 1.09003 * 109.47094 * 160.02291 * 7 6 5 27 27 H 1.09004 * 109.47256 * 60.00140 * 10 9 8 28 28 H 1.09003 * 109.47363 * 179.97438 * 10 9 8 29 29 H 1.09000 * 109.47286 * 299.99939 * 10 9 8 30 30 H 1.08994 * 109.47389 * 59.99840 * 11 9 8 31 31 H 1.09000 * 109.46864 * 180.02562 * 11 9 8 32 32 H 1.08996 * 109.46897 * 299.99800 * 11 9 8 33 33 H 1.09000 * 109.46969 * 60.00333 * 12 9 8 34 34 H 1.09003 * 109.46659 * 180.02562 * 12 9 8 35 35 H 1.08994 * 109.47066 * 300.00078 * 12 9 8 36 36 H 0.97006 * 119.99994 * 0.02562 * 14 13 7 37 37 H 1.07997 * 120.00154 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0044 5 6 4.2717 0.0000 -0.0010 6 6 3.5806 -1.1970 -0.0058 7 6 4.3341 -2.5021 -0.0123 8 8 5.4665 -2.4026 0.8538 9 14 5.9004 -3.8156 1.5433 10 6 6.3311 -5.0484 0.2147 11 6 7.3815 -3.5424 2.6399 12 6 4.4847 -4.4699 2.5623 13 6 4.7984 -2.8072 -1.4131 14 7 4.4892 -3.9211 -1.9611 15 14 5.8254 -1.5590 -2.3494 16 1 6.0444 -0.3610 -1.4996 17 1 7.1361 -2.1613 -2.7021 18 1 5.1127 -1.1626 -3.5904 19 6 2.1981 -1.1970 -0.0058 20 1 -0.3633 -0.0050 1.0277 21 1 -0.3634 0.8925 -0.5094 22 1 -0.3633 -0.8875 -0.5181 23 1 1.6583 2.1326 0.0004 24 1 4.1205 2.1326 0.0085 25 1 5.3518 -0.0001 -0.0010 26 1 3.6796 -3.3012 0.3358 27 1 7.1595 -4.6656 -0.3815 28 1 6.6216 -5.9926 0.6755 29 1 5.4648 -5.2083 -0.4273 30 1 7.1300 -2.8209 3.4172 31 1 7.6718 -4.4867 3.1003 32 1 8.2096 -3.1597 2.0433 33 1 3.6184 -4.6299 1.9204 34 1 4.7749 -5.4140 3.0234 35 1 4.2327 -3.7486 3.3396 36 1 3.9555 -4.5692 -1.4751 37 1 1.6581 -2.1322 -0.0099 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195835205.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:38 Heat of formation + Delta-G solvation = -38.608406 kcal Electronic energy + Delta-G solvation = -16902.596329 eV Core-core repulsion = 14382.044180 eV Total energy + Delta-G solvation = -2520.552149 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.121 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.83002 -38.71884 -35.82237 -33.75297 -32.39046 -29.64707 -28.67960 -28.48198 -27.98271 -27.24858 -23.14122 -22.76725 -21.25926 -18.26706 -17.75288 -17.47143 -16.46462 -15.82915 -15.77433 -15.01778 -14.66546 -14.42508 -14.27758 -14.16775 -13.93584 -13.75327 -13.55558 -13.35630 -13.20511 -13.18844 -13.07130 -13.06700 -12.72461 -12.64369 -12.36969 -12.14187 -11.65853 -11.42141 -11.32132 -10.81031 -10.76650 -10.20169 -9.67443 -9.43360 0.25266 0.48298 0.76813 1.23217 1.40645 1.65132 1.75595 1.89532 1.92441 2.00135 2.35268 2.81919 3.61235 3.68712 3.81426 3.98534 4.06396 4.26462 4.42190 4.49967 4.57252 4.58679 4.63596 4.64415 4.67421 4.70088 4.70238 4.73111 4.75473 4.91115 5.01873 5.12880 5.25699 5.38465 5.48272 5.51280 5.58466 5.67921 5.71144 6.08623 6.72670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.088 4.088 3 C -0.113 4.113 4 C -0.119 4.119 5 C -0.100 4.100 6 C -0.091 4.091 7 C 0.142 3.858 8 O -0.606 6.606 9 Si 1.249 2.751 10 C -0.513 4.513 11 C -0.463 4.463 12 C -0.509 4.509 13 C -0.046 4.046 14 N -0.608 5.608 15 Si 1.050 2.950 16 H -0.226 1.226 17 H -0.248 1.248 18 H -0.248 1.248 19 C -0.109 4.109 20 H 0.071 0.929 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.123 0.877 24 H 0.126 0.874 25 H 0.142 0.858 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.324 0.676 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.737 1.245 1.173 1.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.088 4.088 3 C -0.131 4.131 4 C -0.137 4.137 5 C -0.118 4.118 6 C -0.092 4.092 7 C 0.082 3.918 8 O -0.564 6.564 9 Si 1.386 2.614 10 C -0.615 4.615 11 C -0.570 4.570 12 C -0.611 4.611 13 C -0.291 4.291 14 N -0.223 5.223 15 Si 0.864 3.136 16 H -0.149 1.149 17 H -0.172 1.172 18 H -0.172 1.172 19 C -0.127 4.127 20 H 0.090 0.910 21 H 0.087 0.913 22 H 0.085 0.915 23 H 0.141 0.859 24 H 0.144 0.856 25 H 0.160 0.840 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.143 0.857 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.053 1.622 -0.221 1.637 hybrid contribution -0.972 -1.266 1.577 2.243 sum -1.024 0.356 1.356 1.736 Atomic orbital electron populations 1.20812 0.90951 1.02986 1.02522 1.19871 0.96185 0.92926 0.99818 1.21148 0.94431 0.97606 0.99884 1.21216 0.94227 0.98222 0.99990 1.21353 1.01301 0.91331 0.97838 1.19479 0.93107 0.93921 1.02683 1.20654 0.86120 0.95938 0.89075 1.85427 1.47522 1.61277 1.62144 0.77340 0.66036 0.53864 0.64150 1.27195 1.06006 1.13820 1.14456 1.26249 1.14993 1.05250 1.10502 1.26974 1.15699 1.07501 1.10904 1.32377 0.99098 1.00798 0.96860 1.69485 1.10528 1.02722 1.39553 0.83857 0.77185 0.75083 0.77466 1.14933 1.17158 1.17192 1.20829 0.93000 0.97939 1.00967 0.91030 0.91307 0.91521 0.85868 0.85557 0.84035 0.91078 0.90630 0.90696 0.91659 0.90628 0.90448 0.90553 0.91750 0.90635 0.90741 0.85699 0.86229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.12 10.01 36.01 0.36 0.48 16 2 C -0.09 -0.06 5.88 -104.62 -0.62 -0.68 16 3 C -0.11 -0.06 9.70 -39.58 -0.38 -0.44 16 4 C -0.12 -0.06 10.05 -39.58 -0.40 -0.46 16 5 C -0.10 -0.11 7.29 -39.58 -0.29 -0.40 16 6 C -0.09 -0.10 4.63 -104.62 -0.48 -0.59 16 7 C 0.14 0.05 2.10 -29.04 -0.06 -0.01 16 8 O -0.61 -0.11 7.24 -35.23 -0.26 -0.37 16 9 Si 1.25 -1.64 12.68 -169.99 -2.16 -3.79 16 10 C -0.51 0.14 8.04 101.05 0.81 0.95 16 11 C -0.46 0.44 8.65 101.05 0.87 1.32 16 12 C -0.51 0.39 8.56 101.05 0.87 1.26 16 13 C -0.05 -0.04 3.95 -13.90 -0.05 -0.10 16 14 N -0.61 -0.87 12.06 56.23 0.68 -0.19 16 15 Si 1.05 0.85 27.57 -169.99 -4.69 -3.83 16 16 H -0.23 0.12 4.70 56.52 0.27 0.39 16 17 H -0.25 -0.31 7.11 56.52 0.40 0.10 16 18 H -0.25 -0.39 7.11 56.52 0.40 0.01 16 19 C -0.11 -0.09 9.33 -39.58 -0.37 -0.46 16 20 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 21 H 0.07 -0.11 8.08 -51.93 -0.42 -0.53 16 22 H 0.07 -0.10 8.09 -51.93 -0.42 -0.52 16 23 H 0.12 -0.14 8.06 -52.49 -0.42 -0.57 16 24 H 0.13 -0.17 8.06 -52.49 -0.42 -0.59 16 25 H 0.14 0.05 5.69 -52.49 -0.30 -0.25 16 26 H 0.07 -0.09 5.71 -51.93 -0.30 -0.38 16 27 H 0.07 0.02 7.96 -51.93 -0.41 -0.39 16 28 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 29 H 0.06 0.00 5.17 -51.93 -0.27 -0.27 16 30 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 31 H 0.08 -0.12 7.96 -51.93 -0.41 -0.53 16 32 H 0.08 -0.07 7.96 -51.93 -0.41 -0.49 16 33 H 0.06 -0.06 7.10 -51.93 -0.37 -0.43 16 34 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 35 H 0.07 -0.02 7.96 -51.93 -0.41 -0.44 16 36 H 0.32 -0.07 7.58 -40.82 -0.31 -0.38 16 37 H 0.12 -0.09 8.04 -52.49 -0.42 -0.51 16 LS Contribution 302.11 15.07 4.55 4.55 Total: 0.00 -2.99 302.11 -7.51 -10.50 By element: Atomic # 1 Polarization: -1.83 SS G_CDS: -5.90 Total: -7.73 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 0.26 Total: 0.87 kcal Atomic # 7 Polarization: -0.87 SS G_CDS: 0.68 Total: -0.19 kcal Atomic # 8 Polarization: -0.11 SS G_CDS: -0.26 Total: -0.37 kcal Atomic # 14 Polarization: -0.78 SS G_CDS: -6.84 Total: -7.63 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -2.99 -7.51 -10.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195835205.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.112 kcal (2) G-P(sol) polarization free energy of solvation -2.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds