Wall clock time and date at job start Mon Mar 30 2020 06:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38254 * 119.99834 * 2 1 4 4 C 1.38222 * 119.99920 * 179.78942 * 3 2 1 5 5 C 1.38258 * 119.99551 * 0.46928 * 4 3 2 6 6 C 1.38216 * 120.00160 * 359.76035 * 5 4 3 7 7 C 1.50701 * 120.00078 * 179.97438 * 6 5 4 8 8 O 1.42906 * 109.46665 * 40.02800 * 7 6 5 9 9 Si 1.63099 * 113.99733 * 149.99884 * 8 7 6 10 10 C 1.86294 * 109.47240 * 59.99884 * 9 8 7 11 11 C 1.86303 * 109.46922 * 179.97438 * 9 8 7 12 12 C 1.86303 * 109.47112 * 299.99730 * 9 8 7 13 13 C 1.50698 * 109.47304 * 280.03077 * 7 6 5 14 14 N 1.27943 * 119.99701 * 234.99734 * 13 7 6 15 15 Si 1.86793 * 120.00302 * 54.99579 * 13 7 6 16 16 H 1.48502 * 109.46984 * 0.02562 * 15 13 7 17 17 H 1.48496 * 109.47100 * 119.99906 * 15 13 7 18 18 H 1.48499 * 109.47269 * 240.00120 * 15 13 7 19 19 C 1.38213 * 119.99863 * 180.27755 * 2 1 3 20 20 H 1.09001 * 109.46953 * 269.72186 * 1 2 3 21 21 H 1.09000 * 109.47318 * 29.71784 * 1 2 3 22 22 H 1.09000 * 109.47161 * 149.72414 * 1 2 3 23 23 H 1.07997 * 120.00151 * 0.02562 * 3 2 1 24 24 H 1.07997 * 120.00140 * 180.25074 * 4 3 2 25 25 H 1.08002 * 120.00008 * 179.78995 * 5 4 3 26 26 H 1.09003 * 109.47094 * 160.02291 * 7 6 5 27 27 H 1.09004 * 109.47256 * 60.00140 * 10 9 8 28 28 H 1.09003 * 109.47363 * 179.97438 * 10 9 8 29 29 H 1.09000 * 109.47286 * 299.99939 * 10 9 8 30 30 H 1.08994 * 109.47389 * 59.99840 * 11 9 8 31 31 H 1.09000 * 109.46864 * 180.02562 * 11 9 8 32 32 H 1.08996 * 109.46897 * 299.99800 * 11 9 8 33 33 H 1.09000 * 109.46969 * 60.00333 * 12 9 8 34 34 H 1.09003 * 109.46659 * 180.02562 * 12 9 8 35 35 H 1.08994 * 109.47066 * 300.00078 * 12 9 8 36 36 H 0.97006 * 119.99994 * 0.02562 * 14 13 7 37 37 H 1.07997 * 120.00154 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0044 5 6 4.2717 0.0000 -0.0010 6 6 3.5806 -1.1970 -0.0058 7 6 4.3341 -2.5021 -0.0123 8 8 5.4665 -2.4026 0.8538 9 14 5.9004 -3.8156 1.5433 10 6 6.3311 -5.0484 0.2147 11 6 7.3815 -3.5424 2.6399 12 6 4.4847 -4.4699 2.5623 13 6 4.7984 -2.8072 -1.4131 14 7 4.4892 -3.9211 -1.9611 15 14 5.8254 -1.5590 -2.3494 16 1 6.0444 -0.3610 -1.4996 17 1 7.1361 -2.1613 -2.7021 18 1 5.1127 -1.1626 -3.5904 19 6 2.1981 -1.1970 -0.0058 20 1 -0.3633 -0.0050 1.0277 21 1 -0.3634 0.8925 -0.5094 22 1 -0.3633 -0.8875 -0.5181 23 1 1.6583 2.1326 0.0004 24 1 4.1205 2.1326 0.0085 25 1 5.3518 -0.0001 -0.0010 26 1 3.6796 -3.3012 0.3358 27 1 7.1595 -4.6656 -0.3815 28 1 6.6216 -5.9926 0.6755 29 1 5.4648 -5.2083 -0.4273 30 1 7.1300 -2.8209 3.4172 31 1 7.6718 -4.4867 3.1003 32 1 8.2096 -3.1597 2.0433 33 1 3.6184 -4.6299 1.9204 34 1 4.7749 -5.4140 3.0234 35 1 4.2327 -3.7486 3.3396 36 1 3.9555 -4.5692 -1.4751 37 1 1.6581 -2.1322 -0.0099 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195835205.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:37 Heat of formation + Delta-G solvation = -26.658252 kcal Electronic energy + Delta-G solvation = -16902.078131 eV Core-core repulsion = 14382.044180 eV Total energy + Delta-G solvation = -2520.033952 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.121 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.81909 -38.71291 -35.86283 -33.71727 -32.37980 -29.57971 -28.60161 -28.43338 -27.92822 -27.24188 -23.13207 -22.79570 -21.26650 -18.24686 -17.74608 -17.49266 -16.44256 -15.87277 -15.77213 -14.97567 -14.59966 -14.36477 -14.22257 -14.14725 -13.88997 -13.75880 -13.53523 -13.26736 -13.14986 -13.12819 -13.05362 -13.01264 -12.75051 -12.62263 -12.34998 -12.10490 -11.67933 -11.45908 -11.32862 -10.75281 -10.74501 -10.21174 -9.68226 -9.43851 0.24089 0.47574 0.72326 1.17202 1.45576 1.59591 1.81509 1.85572 1.91862 2.02366 2.41178 2.81548 3.62283 3.69521 3.84044 4.03882 4.11119 4.30730 4.47275 4.52466 4.60113 4.64250 4.68634 4.71120 4.72194 4.76711 4.78475 4.81181 4.82328 4.97821 5.05790 5.17253 5.31676 5.44969 5.53216 5.57828 5.59302 5.69277 5.71330 6.10731 6.71311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.099 4.099 3 C -0.123 4.123 4 C -0.126 4.126 5 C -0.115 4.115 6 C -0.100 4.100 7 C 0.140 3.860 8 O -0.615 6.615 9 Si 1.283 2.717 10 C -0.522 4.522 11 C -0.472 4.472 12 C -0.516 4.516 13 C -0.045 4.045 14 N -0.623 5.623 15 Si 1.048 2.952 16 H -0.206 1.206 17 H -0.256 1.256 18 H -0.262 1.262 19 C -0.121 4.121 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.137 0.863 24 H 0.142 0.858 25 H 0.145 0.855 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.332 0.668 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.043 1.413 1.634 2.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.099 4.099 3 C -0.141 4.141 4 C -0.144 4.144 5 C -0.132 4.132 6 C -0.101 4.101 7 C 0.081 3.919 8 O -0.572 6.572 9 Si 1.419 2.581 10 C -0.623 4.623 11 C -0.578 4.578 12 C -0.617 4.617 13 C -0.290 4.290 14 N -0.239 5.239 15 Si 0.863 3.137 16 H -0.128 1.128 17 H -0.181 1.181 18 H -0.187 1.187 19 C -0.139 4.139 20 H 0.094 0.906 21 H 0.093 0.907 22 H 0.089 0.911 23 H 0.155 0.845 24 H 0.160 0.840 25 H 0.163 0.837 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.151 0.849 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.356 1.789 0.246 1.840 hybrid contribution -0.877 -1.326 1.414 2.128 sum -1.233 0.463 1.661 2.120 Atomic orbital electron populations 1.20836 0.89902 1.03507 1.02926 1.20153 0.97150 0.93026 0.99557 1.21404 0.94663 0.98250 0.99770 1.21470 0.94527 0.98763 0.99610 1.21510 1.01641 0.91686 0.98395 1.19621 0.93411 0.94231 1.02803 1.20676 0.86317 0.96170 0.88739 1.85417 1.47560 1.62063 1.62135 0.76749 0.65371 0.52833 0.63165 1.27329 1.05642 1.14529 1.14834 1.26339 1.15255 1.05583 1.10670 1.27048 1.16052 1.07652 1.10977 1.32369 0.98819 1.00574 0.97259 1.69478 1.11081 1.03174 1.40144 0.83910 0.76569 0.75986 0.77257 1.12837 1.18065 1.18657 1.21048 0.93132 0.98632 1.01131 0.90613 0.90694 0.91125 0.84493 0.84025 0.83698 0.89674 0.91334 0.90289 0.91959 0.90710 0.89850 0.90603 0.91509 0.90287 0.91095 0.84860 0.85144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.29 10.01 71.24 0.71 1.00 16 2 C -0.10 -0.12 5.88 -19.86 -0.12 -0.24 16 3 C -0.12 -0.09 9.70 22.27 0.22 0.12 16 4 C -0.13 -0.11 10.05 22.27 0.22 0.11 16 5 C -0.11 -0.26 7.29 22.27 0.16 -0.10 16 6 C -0.10 -0.23 4.63 -19.87 -0.09 -0.33 16 7 C 0.14 0.10 2.10 29.10 0.06 0.16 16 8 O -0.61 -0.21 7.24 -148.98 -1.08 -1.28 16 9 Si 1.28 -3.48 12.68 68.60 0.87 -2.61 16 10 C -0.52 0.18 8.04 113.37 0.91 1.10 16 11 C -0.47 0.96 8.65 113.37 0.98 1.95 16 12 C -0.52 0.96 8.56 113.37 0.97 1.93 16 13 C -0.04 -0.10 3.95 88.67 0.35 0.25 16 14 N -0.62 -2.05 12.06 24.11 0.29 -1.76 16 15 Si 1.05 2.41 27.57 68.60 1.89 4.30 16 16 H -0.21 0.22 4.70 99.48 0.47 0.68 16 17 H -0.26 -0.90 7.11 99.48 0.71 -0.19 16 18 H -0.26 -1.16 7.11 99.48 0.71 -0.45 16 19 C -0.12 -0.20 9.33 22.27 0.21 0.01 16 20 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 21 H 0.07 -0.29 8.08 -2.39 -0.02 -0.31 16 22 H 0.07 -0.24 8.09 -2.39 -0.02 -0.26 16 23 H 0.14 -0.39 8.06 -2.91 -0.02 -0.42 16 24 H 0.14 -0.45 8.06 -2.91 -0.02 -0.47 16 25 H 0.15 0.09 5.69 -2.91 -0.02 0.08 16 26 H 0.09 -0.22 5.71 -2.39 -0.01 -0.24 16 27 H 0.07 0.08 7.96 -2.38 -0.02 0.06 16 28 H 0.08 -0.11 7.96 -2.39 -0.02 -0.13 16 29 H 0.06 0.02 5.17 -2.39 -0.01 0.01 16 30 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 31 H 0.08 -0.28 7.96 -2.39 -0.02 -0.29 16 32 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 33 H 0.07 -0.16 7.10 -2.39 -0.02 -0.17 16 34 H 0.08 -0.20 7.96 -2.39 -0.02 -0.22 16 35 H 0.07 -0.06 7.96 -2.39 -0.02 -0.08 16 36 H 0.33 -0.05 7.58 -92.70 -0.70 -0.75 16 37 H 0.13 -0.20 8.04 -2.91 -0.02 -0.23 16 Total: 0.00 -6.78 302.11 7.42 0.64 By element: Atomic # 1 Polarization: -4.82 SS G_CDS: 0.86 Total: -3.96 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 4.59 Total: 5.96 kcal Atomic # 7 Polarization: -2.05 SS G_CDS: 0.29 Total: -1.76 kcal Atomic # 8 Polarization: -0.21 SS G_CDS: -1.08 Total: -1.28 kcal Atomic # 14 Polarization: -1.07 SS G_CDS: 2.76 Total: 1.69 kcal Total: -6.78 7.42 0.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195835205.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.296 kcal (2) G-P(sol) polarization free energy of solvation -6.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) 0.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds