Wall clock time and date at job start Mon Mar 30 2020 06:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38256 * 119.99755 * 2 1 4 4 C 1.38216 * 120.00037 * 180.02562 * 3 2 1 5 5 C 1.38255 * 119.99744 * 359.96154 * 4 3 2 6 6 C 1.38212 * 120.00300 * 359.97134 * 5 4 3 7 7 C 1.38208 * 120.00186 * 180.17630 * 2 1 3 8 8 C 1.50698 * 120.00333 * 0.03695 * 7 2 1 9 9 O 1.42900 * 109.47508 * 205.19578 * 8 7 2 10 10 Si 1.63094 * 114.00218 * 149.99812 * 9 8 7 11 11 C 1.86296 * 109.47169 * 59.99936 * 10 9 8 12 12 C 1.86304 * 109.47152 * 179.97438 * 10 9 8 13 13 C 1.86302 * 109.47332 * 299.99870 * 10 9 8 14 14 C 1.50697 * 109.47327 * 85.19090 * 8 7 2 15 15 N 1.27936 * 120.00429 * 235.00607 * 14 8 7 16 16 Si 1.86805 * 119.99551 * 55.00138 * 14 8 7 17 17 H 1.48502 * 109.47001 * 90.00092 * 16 14 8 18 18 H 1.48501 * 109.47184 * 209.99768 * 16 14 8 19 19 H 1.48501 * 109.47384 * 330.00089 * 16 14 8 20 20 H 1.09005 * 109.47388 * 90.00327 * 1 2 3 21 21 H 1.09003 * 109.47096 * 209.99502 * 1 2 3 22 22 H 1.08998 * 109.47316 * 329.99372 * 1 2 3 23 23 H 1.08002 * 120.00247 * 0.02562 * 3 2 1 24 24 H 1.08005 * 120.00025 * 179.97438 * 4 3 2 25 25 H 1.07999 * 119.99759 * 179.97438 * 5 4 3 26 26 H 1.08002 * 119.99812 * 180.02562 * 6 5 4 27 27 H 1.09000 * 109.46761 * 325.19346 * 8 7 2 28 28 H 1.09001 * 109.47295 * 60.00353 * 11 10 9 29 29 H 1.09003 * 109.47645 * 180.02562 * 11 10 9 30 30 H 1.08997 * 109.47492 * 299.99746 * 11 10 9 31 31 H 1.09003 * 109.47083 * 60.00190 * 12 10 9 32 32 H 1.09000 * 109.47281 * 179.97438 * 12 10 9 33 33 H 1.08998 * 109.47020 * 300.00350 * 12 10 9 34 34 H 1.09004 * 109.47048 * 59.99775 * 13 10 9 35 35 H 1.08995 * 109.47117 * 179.97438 * 13 10 9 36 36 H 1.08997 * 109.46922 * 300.00288 * 13 10 9 37 37 H 0.97000 * 120.00364 * 359.97438 * 15 14 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2716 0.0001 -0.0003 6 6 3.5807 -1.1969 0.0011 7 6 2.1981 -1.1969 -0.0037 8 6 1.4447 -2.5020 -0.0085 9 8 2.2620 -3.5260 0.5620 10 14 1.4212 -4.7035 1.3148 11 6 0.2789 -5.5275 0.0955 12 6 2.6039 -5.9654 2.0074 13 6 0.4204 -3.9630 2.7008 14 6 1.0912 -2.8728 -1.4258 15 7 -0.1265 -3.1067 -1.7411 16 14 2.4310 -2.9906 -2.7222 17 1 2.9660 -4.3755 -2.7565 18 1 1.8656 -2.6454 -4.0512 19 1 3.5264 -2.0449 -2.3894 20 1 -0.3634 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3634 0.8899 0.5139 23 1 1.6582 2.1327 0.0004 24 1 4.1203 2.1328 -0.0010 25 1 5.3516 0.0002 -0.0011 26 1 4.1207 -2.1322 0.0018 27 1 0.5319 -2.3968 0.5779 28 1 0.8643 -5.9608 -0.7154 29 1 -0.2834 -6.3141 0.5986 30 1 -0.4132 -4.7895 -0.3101 31 1 3.2726 -5.4836 2.7207 32 1 2.0421 -6.7521 2.5109 33 1 3.1891 -6.3985 1.1962 34 1 -0.2715 -3.2249 2.2952 35 1 -0.1418 -4.7499 3.2035 36 1 1.0888 -3.4809 3.4141 37 1 -0.8222 -3.0458 -1.0679 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195988521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:46 Heat of formation + Delta-G solvation = -39.745732 kcal Electronic energy + Delta-G solvation = -17219.021538 eV Core-core repulsion = 14698.420070 eV Total energy + Delta-G solvation = -2520.601467 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.121 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.98434 -38.57416 -35.87786 -33.82759 -32.27446 -29.65188 -28.72076 -28.49037 -28.20146 -27.01547 -23.26714 -22.40399 -21.46239 -18.33734 -17.67857 -17.57516 -16.16791 -15.84906 -15.77189 -15.08342 -14.76145 -14.40807 -14.25630 -14.05102 -13.93649 -13.84134 -13.53147 -13.37695 -13.32028 -13.20554 -13.08639 -13.04116 -12.75327 -12.70792 -12.26484 -12.01402 -11.79248 -11.58774 -11.32108 -10.81315 -10.77472 -10.21703 -9.58186 -9.47151 0.29421 0.50684 0.75263 1.24052 1.37939 1.71676 1.75066 1.89254 1.92847 2.01790 2.34429 2.83677 3.57209 3.73359 3.86724 3.90657 4.03627 4.23893 4.35010 4.48066 4.56265 4.58015 4.61553 4.63514 4.66513 4.67345 4.69550 4.72215 4.78485 4.83724 5.04628 5.11679 5.24790 5.37835 5.47398 5.50559 5.60128 5.66795 5.75385 6.10721 6.72435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.075 4.075 3 C -0.123 4.123 4 C -0.108 4.108 5 C -0.130 4.130 6 C -0.079 4.079 7 C -0.099 4.099 8 C 0.139 3.861 9 O -0.608 6.608 10 Si 1.248 2.752 11 C -0.513 4.513 12 C -0.463 4.463 13 C -0.509 4.509 14 C -0.044 4.044 15 N -0.607 5.607 16 Si 1.053 2.947 17 H -0.243 1.243 18 H -0.250 1.250 19 H -0.234 1.234 20 H 0.075 0.925 21 H 0.062 0.938 22 H 0.073 0.927 23 H 0.124 0.876 24 H 0.123 0.877 25 H 0.125 0.875 26 H 0.137 0.863 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.697 0.807 1.063 1.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.076 4.076 3 C -0.141 4.141 4 C -0.126 4.126 5 C -0.148 4.148 6 C -0.097 4.097 7 C -0.100 4.100 8 C 0.080 3.920 9 O -0.566 6.566 10 Si 1.386 2.614 11 C -0.615 4.615 12 C -0.570 4.570 13 C -0.611 4.611 14 C -0.289 4.289 15 N -0.222 5.222 16 Si 0.866 3.134 17 H -0.166 1.166 18 H -0.173 1.173 19 H -0.157 1.157 20 H 0.093 0.907 21 H 0.081 0.919 22 H 0.092 0.908 23 H 0.142 0.858 24 H 0.141 0.859 25 H 0.143 0.857 26 H 0.155 0.845 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.032 0.595 -0.488 1.287 hybrid contribution -1.099 0.021 1.914 2.207 sum -0.067 0.616 1.427 1.556 Atomic orbital electron populations 1.20941 0.91520 1.02968 1.02717 1.19653 0.95787 0.92540 0.99577 1.20982 0.94370 0.97204 1.01527 1.21230 0.94269 0.98337 0.98813 1.21215 1.00210 0.92371 1.01001 1.21036 0.93231 0.98801 0.96583 1.19356 0.94337 0.92195 1.04068 1.20712 0.92287 0.86185 0.92815 1.85385 1.52563 1.44080 1.74527 0.77342 0.61301 0.59781 0.63006 1.27187 1.12082 1.09040 1.13144 1.26248 1.11482 1.11973 1.07286 1.26976 1.10404 1.07492 1.16209 1.32330 1.02241 0.92548 1.01803 1.69516 1.02421 1.08889 1.41336 0.83698 0.73547 0.82070 0.74076 1.16615 1.17313 1.15685 0.90676 0.91918 0.90849 0.85825 0.85873 0.85714 0.84524 0.90737 0.90603 0.90687 0.91646 0.90619 0.90431 0.90546 0.91788 0.90605 0.90716 0.85809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.10 9.60 36.00 0.35 0.45 16 2 C -0.08 -0.07 5.88 -104.63 -0.62 -0.68 16 3 C -0.12 -0.07 9.70 -39.58 -0.38 -0.46 16 4 C -0.11 -0.05 10.05 -39.58 -0.40 -0.45 16 5 C -0.13 -0.09 10.05 -39.58 -0.40 -0.48 16 6 C -0.08 -0.09 7.36 -39.58 -0.29 -0.39 16 7 C -0.10 -0.12 4.29 -104.63 -0.45 -0.57 16 8 C 0.14 0.05 1.55 -29.04 -0.05 0.00 16 9 O -0.61 -0.07 6.75 -35.23 -0.24 -0.30 16 10 Si 1.25 -1.68 12.68 -169.99 -2.16 -3.83 16 11 C -0.51 0.18 8.04 101.05 0.81 0.99 16 12 C -0.46 0.47 8.65 101.05 0.87 1.34 16 13 C -0.51 0.41 8.56 101.05 0.87 1.28 16 14 C -0.04 -0.04 3.96 -13.90 -0.05 -0.09 16 15 N -0.61 -0.67 12.06 56.22 0.68 0.01 16 16 Si 1.05 1.05 28.21 -169.99 -4.80 -3.75 16 17 H -0.24 -0.20 7.11 56.52 0.40 0.20 16 18 H -0.25 -0.47 7.11 56.52 0.40 -0.07 16 19 H -0.23 -0.12 5.92 56.52 0.33 0.22 16 20 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 21 H 0.06 -0.09 6.03 -51.93 -0.31 -0.41 16 22 H 0.07 -0.12 8.09 -51.93 -0.42 -0.54 16 23 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 24 H 0.12 -0.17 8.06 -52.48 -0.42 -0.59 16 25 H 0.12 -0.14 8.06 -52.49 -0.42 -0.56 16 26 H 0.14 0.04 7.35 -52.49 -0.39 -0.35 16 27 H 0.08 -0.08 3.86 -51.93 -0.20 -0.28 16 28 H 0.07 0.02 7.96 -51.93 -0.41 -0.40 16 29 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 30 H 0.06 -0.01 5.17 -51.93 -0.27 -0.28 16 31 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 32 H 0.08 -0.12 7.96 -51.93 -0.41 -0.53 16 33 H 0.08 -0.07 7.96 -51.93 -0.41 -0.49 16 34 H 0.06 -0.06 7.10 -51.93 -0.37 -0.43 16 35 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 36 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 37 H 0.32 -0.16 7.58 -40.82 -0.31 -0.47 16 LS Contribution 300.77 15.07 4.53 4.53 Total: 0.00 -2.88 300.77 -7.43 -10.31 By element: Atomic # 1 Polarization: -2.20 SS G_CDS: -5.71 Total: -7.91 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 0.26 Total: 0.95 kcal Atomic # 7 Polarization: -0.67 SS G_CDS: 0.68 Total: 0.01 kcal Atomic # 8 Polarization: -0.07 SS G_CDS: -0.24 Total: -0.30 kcal Atomic # 14 Polarization: -0.63 SS G_CDS: -6.95 Total: -7.58 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -2.88 -7.43 -10.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195988521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.434 kcal (2) G-P(sol) polarization free energy of solvation -2.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds