Wall clock time and date at job start Mon Mar 30 2020 06:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38256 * 119.99755 * 2 1 4 4 C 1.38216 * 120.00037 * 180.02562 * 3 2 1 5 5 C 1.38255 * 119.99744 * 359.96154 * 4 3 2 6 6 C 1.38212 * 120.00300 * 359.97134 * 5 4 3 7 7 C 1.38208 * 120.00186 * 180.17630 * 2 1 3 8 8 C 1.50698 * 120.00333 * 0.03695 * 7 2 1 9 9 O 1.42900 * 109.47508 * 205.19578 * 8 7 2 10 10 Si 1.63094 * 114.00218 * 149.99812 * 9 8 7 11 11 C 1.86296 * 109.47169 * 59.99936 * 10 9 8 12 12 C 1.86304 * 109.47152 * 179.97438 * 10 9 8 13 13 C 1.86302 * 109.47332 * 299.99870 * 10 9 8 14 14 C 1.50697 * 109.47327 * 85.19090 * 8 7 2 15 15 N 1.27936 * 120.00429 * 235.00607 * 14 8 7 16 16 Si 1.86805 * 119.99551 * 55.00138 * 14 8 7 17 17 H 1.48502 * 109.47001 * 90.00092 * 16 14 8 18 18 H 1.48501 * 109.47184 * 209.99768 * 16 14 8 19 19 H 1.48501 * 109.47384 * 330.00089 * 16 14 8 20 20 H 1.09005 * 109.47388 * 90.00327 * 1 2 3 21 21 H 1.09003 * 109.47096 * 209.99502 * 1 2 3 22 22 H 1.08998 * 109.47316 * 329.99372 * 1 2 3 23 23 H 1.08002 * 120.00247 * 0.02562 * 3 2 1 24 24 H 1.08005 * 120.00025 * 179.97438 * 4 3 2 25 25 H 1.07999 * 119.99759 * 179.97438 * 5 4 3 26 26 H 1.08002 * 119.99812 * 180.02562 * 6 5 4 27 27 H 1.09000 * 109.46761 * 325.19346 * 8 7 2 28 28 H 1.09001 * 109.47295 * 60.00353 * 11 10 9 29 29 H 1.09003 * 109.47645 * 180.02562 * 11 10 9 30 30 H 1.08997 * 109.47492 * 299.99746 * 11 10 9 31 31 H 1.09003 * 109.47083 * 60.00190 * 12 10 9 32 32 H 1.09000 * 109.47281 * 179.97438 * 12 10 9 33 33 H 1.08998 * 109.47020 * 300.00350 * 12 10 9 34 34 H 1.09004 * 109.47048 * 59.99775 * 13 10 9 35 35 H 1.08995 * 109.47117 * 179.97438 * 13 10 9 36 36 H 1.08997 * 109.46922 * 300.00288 * 13 10 9 37 37 H 0.97000 * 120.00364 * 359.97438 * 15 14 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2716 0.0001 -0.0003 6 6 3.5807 -1.1969 0.0011 7 6 2.1981 -1.1969 -0.0037 8 6 1.4447 -2.5020 -0.0085 9 8 2.2620 -3.5260 0.5620 10 14 1.4212 -4.7035 1.3148 11 6 0.2789 -5.5275 0.0955 12 6 2.6039 -5.9654 2.0074 13 6 0.4204 -3.9630 2.7008 14 6 1.0912 -2.8728 -1.4258 15 7 -0.1265 -3.1067 -1.7411 16 14 2.4310 -2.9906 -2.7222 17 1 2.9660 -4.3755 -2.7565 18 1 1.8656 -2.6454 -4.0512 19 1 3.5264 -2.0449 -2.3894 20 1 -0.3634 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3634 0.8899 0.5139 23 1 1.6582 2.1327 0.0004 24 1 4.1203 2.1328 -0.0010 25 1 5.3516 0.0002 -0.0011 26 1 4.1207 -2.1322 0.0018 27 1 0.5319 -2.3968 0.5779 28 1 0.8643 -5.9608 -0.7154 29 1 -0.2834 -6.3141 0.5986 30 1 -0.4132 -4.7895 -0.3101 31 1 3.2726 -5.4836 2.7207 32 1 2.0421 -6.7521 2.5109 33 1 3.1891 -6.3985 1.1962 34 1 -0.2715 -3.2249 2.2952 35 1 -0.1418 -4.7499 3.2035 36 1 1.0888 -3.4809 3.4141 37 1 -0.8222 -3.0458 -1.0679 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195988521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:45 Heat of formation + Delta-G solvation = -27.527107 kcal Electronic energy + Delta-G solvation = -17218.491698 eV Core-core repulsion = 14698.420070 eV Total energy + Delta-G solvation = -2520.071628 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.121 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.97177 -38.56683 -35.90549 -33.79541 -32.26560 -29.57914 -28.64530 -28.43478 -28.15159 -26.99830 -23.28204 -22.41214 -21.46557 -18.31081 -17.66113 -17.59737 -16.14102 -15.91506 -15.76092 -15.05613 -14.70982 -14.34137 -14.19907 -14.01326 -13.89763 -13.83218 -13.49897 -13.28849 -13.23007 -13.14400 -13.06589 -13.01399 -12.79433 -12.69304 -12.21598 -12.05657 -11.81991 -11.60317 -11.32811 -10.75591 -10.74220 -10.22336 -9.59144 -9.47703 0.28277 0.49596 0.71856 1.17394 1.42925 1.62826 1.82488 1.84651 1.91821 2.02231 2.40841 2.83158 3.58707 3.74265 3.88799 3.95940 4.08051 4.28512 4.42254 4.50036 4.61144 4.64286 4.70022 4.71214 4.71674 4.72623 4.77550 4.77956 4.83988 4.89419 5.08911 5.15069 5.28710 5.44959 5.53340 5.57728 5.61606 5.66932 5.75583 6.12639 6.72157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.086 4.086 3 C -0.133 4.133 4 C -0.117 4.117 5 C -0.140 4.140 6 C -0.093 4.093 7 C -0.110 4.110 8 C 0.139 3.861 9 O -0.616 6.616 10 Si 1.281 2.719 11 C -0.522 4.522 12 C -0.472 4.472 13 C -0.516 4.516 14 C -0.042 4.042 15 N -0.618 5.618 16 Si 1.054 2.946 17 H -0.242 1.242 18 H -0.266 1.266 19 H -0.228 1.228 20 H 0.075 0.925 21 H 0.068 0.932 22 H 0.081 0.919 23 H 0.137 0.863 24 H 0.139 0.861 25 H 0.139 0.861 26 H 0.140 0.860 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.568 1.029 1.521 1.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.087 4.087 3 C -0.151 4.151 4 C -0.135 4.135 5 C -0.158 4.158 6 C -0.111 4.111 7 C -0.111 4.111 8 C 0.079 3.921 9 O -0.573 6.573 10 Si 1.416 2.584 11 C -0.623 4.623 12 C -0.578 4.578 13 C -0.617 4.617 14 C -0.288 4.288 15 N -0.234 5.234 16 Si 0.868 3.132 17 H -0.165 1.165 18 H -0.190 1.190 19 H -0.150 1.150 20 H 0.094 0.906 21 H 0.087 0.913 22 H 0.100 0.900 23 H 0.155 0.845 24 H 0.157 0.843 25 H 0.156 0.844 26 H 0.158 0.842 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.905 0.810 -0.027 1.215 hybrid contribution -1.059 -0.045 1.755 2.051 sum -0.154 0.766 1.728 1.896 Atomic orbital electron populations 1.20981 0.90575 1.03730 1.02952 1.19897 0.96683 0.92596 0.99493 1.21247 0.94710 0.97772 1.01372 1.21493 0.94501 0.98983 0.98501 1.21463 1.01090 0.92370 1.00880 1.21210 0.93533 0.99276 0.97056 1.19511 0.94535 0.92672 1.04334 1.20723 0.92711 0.85987 0.92629 1.85377 1.53043 1.44296 1.74627 0.76788 0.60482 0.58959 0.62124 1.27310 1.12370 1.09280 1.13316 1.26338 1.11716 1.12394 1.07384 1.27047 1.10578 1.07741 1.16350 1.32246 1.02089 0.92389 1.02095 1.69493 1.02761 1.09122 1.41996 0.83669 0.73913 0.82232 0.73376 1.16514 1.18982 1.15038 0.90644 0.91292 0.89995 0.84516 0.84346 0.84364 0.84179 0.89475 0.91300 0.90248 0.91851 0.90659 0.89827 0.90670 0.91530 0.90219 0.91091 0.84890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.24 9.60 71.24 0.68 0.92 16 2 C -0.09 -0.15 5.88 -19.87 -0.12 -0.27 16 3 C -0.13 -0.13 9.70 22.27 0.22 0.08 16 4 C -0.12 -0.08 10.05 22.27 0.22 0.14 16 5 C -0.14 -0.19 10.05 22.27 0.22 0.03 16 6 C -0.09 -0.25 7.36 22.27 0.16 -0.09 16 7 C -0.11 -0.28 4.29 -19.87 -0.09 -0.37 16 8 C 0.14 0.11 1.55 29.10 0.05 0.15 16 9 O -0.62 -0.19 6.75 -148.98 -1.01 -1.19 16 10 Si 1.28 -3.54 12.68 68.60 0.87 -2.67 16 11 C -0.52 0.33 8.04 113.37 0.91 1.24 16 12 C -0.47 0.99 8.65 113.37 0.98 1.97 16 13 C -0.52 1.02 8.56 113.37 0.97 1.99 16 14 C -0.04 -0.09 3.96 88.67 0.35 0.26 16 15 N -0.62 -1.51 12.06 24.11 0.29 -1.22 16 16 Si 1.05 2.85 28.21 68.60 1.94 4.78 16 17 H -0.24 -0.56 7.11 99.48 0.71 0.14 16 18 H -0.27 -1.36 7.11 99.48 0.71 -0.65 16 19 H -0.23 -0.36 5.92 99.48 0.59 0.23 16 20 H 0.07 -0.15 8.14 -2.38 -0.02 -0.17 16 21 H 0.07 -0.24 6.03 -2.39 -0.01 -0.25 16 22 H 0.08 -0.31 8.09 -2.39 -0.02 -0.33 16 23 H 0.14 -0.35 8.06 -2.91 -0.02 -0.37 16 24 H 0.14 -0.45 8.06 -2.91 -0.02 -0.47 16 25 H 0.14 -0.33 8.06 -2.91 -0.02 -0.35 16 26 H 0.14 0.14 7.35 -2.91 -0.02 0.12 16 27 H 0.09 -0.20 3.86 -2.39 -0.01 -0.21 16 28 H 0.07 0.06 7.96 -2.39 -0.02 0.04 16 29 H 0.08 -0.14 7.96 -2.39 -0.02 -0.15 16 30 H 0.06 -0.01 5.17 -2.39 -0.01 -0.03 16 31 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 32 H 0.08 -0.28 7.96 -2.39 -0.02 -0.30 16 33 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 34 H 0.07 -0.17 7.10 -2.39 -0.02 -0.18 16 35 H 0.08 -0.22 7.96 -2.39 -0.02 -0.23 16 36 H 0.07 -0.07 7.96 -2.39 -0.02 -0.09 16 37 H 0.33 -0.33 7.58 -92.71 -0.70 -1.03 16 Total: 0.00 -6.47 300.77 7.64 1.17 By element: Atomic # 1 Polarization: -5.60 SS G_CDS: 0.98 Total: -4.61 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 4.57 Total: 6.08 kcal Atomic # 7 Polarization: -1.51 SS G_CDS: 0.29 Total: -1.22 kcal Atomic # 8 Polarization: -0.19 SS G_CDS: -1.01 Total: -1.19 kcal Atomic # 14 Polarization: -0.69 SS G_CDS: 2.81 Total: 2.11 kcal Total: -6.47 7.64 1.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195988521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.698 kcal (2) G-P(sol) polarization free energy of solvation -6.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) 1.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds