Wall clock time and date at job start Mon Mar 30 2020 06:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86799 * 120.00309 * 2 1 4 4 H 1.48496 * 109.47204 * 270.00012 * 3 2 1 5 5 H 1.48499 * 109.46870 * 30.00052 * 3 2 1 6 6 H 1.48498 * 109.46975 * 149.99864 * 3 2 1 7 7 C 1.39935 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99871 * 197.74397 * 7 2 1 9 9 C 1.41409 * 120.00093 * 17.73594 * 7 2 1 10 10 C 1.40724 * 120.20684 * 204.35046 * 9 7 2 11 11 C 1.37854 * 119.83211 * 179.97438 * 10 9 7 12 12 F 1.35097 * 119.87162 * 180.02562 * 11 10 9 13 13 C 1.38789 * 120.25660 * 0.02562 * 11 10 9 14 14 C 1.39078 * 120.41577 * 359.97438 * 13 11 10 15 15 O 1.35895 * 119.91737 * 180.02562 * 14 13 11 16 16 C 1.42895 * 117.00305 * 359.97438 * 15 14 13 17 17 C 1.53006 * 109.47476 * 180.02562 * 16 15 14 18 18 C 1.53780 * 113.61484 * 185.00299 * 17 16 15 19 19 C 1.53783 * 87.17092 * 219.89295 * 18 17 16 20 20 C 1.53780 * 113.69004 * 87.46606 * 17 16 15 21 21 C 1.38152 * 120.16338 * 0.27577 * 14 13 11 22 22 H 0.96998 * 119.99821 * 359.97438 * 1 2 3 23 23 H 1.07999 * 120.07928 * 0.02562 * 10 9 7 24 24 H 1.07996 * 119.79195 * 180.02562 * 13 11 10 25 25 H 1.09000 * 109.47104 * 60.00274 * 16 15 14 26 26 H 1.09001 * 109.47514 * 300.00459 * 16 15 14 27 27 H 1.09003 * 112.84763 * 316.19442 * 17 16 15 28 28 H 1.08998 * 113.61754 * 334.48226 * 18 17 16 29 29 H 1.09003 * 113.61254 * 105.30086 * 18 17 16 30 30 H 1.08999 * 113.61413 * 140.02450 * 19 18 17 31 31 H 1.09000 * 113.60876 * 270.92416 * 19 18 17 32 32 H 1.08999 * 113.60796 * 254.54151 * 20 17 16 33 33 H 1.08999 * 113.61408 * 25.35740 * 20 17 16 34 34 H 1.07991 * 120.13210 * 179.72675 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0464 -1.4000 5 1 1.4399 2.6526 0.7001 6 1 3.5399 1.4400 0.7001 7 6 2.0079 -1.2119 -0.0005 8 1 3.0494 -1.2343 0.2845 9 6 1.3513 -2.4073 -0.3741 10 6 1.8269 -3.6496 0.0849 11 6 1.1804 -4.8100 -0.2837 12 9 1.6360 -6.0031 0.1570 13 6 0.0634 -4.7575 -1.1056 14 6 -0.4157 -3.5354 -1.5653 15 8 -1.5106 -3.4956 -2.3693 16 6 -2.1173 -4.7460 -2.7015 17 6 -3.3258 -4.5019 -3.6075 18 6 -4.1249 -5.7767 -3.9255 19 6 -4.2704 -5.2366 -5.3580 20 6 -2.9747 -4.4432 -5.1035 21 6 0.2219 -2.3622 -1.2109 22 1 -0.4850 0.8400 0.0004 23 1 2.6956 -3.6936 0.7250 24 1 -0.4375 -5.6712 -1.3894 25 1 -2.4420 -5.2461 -1.7890 26 1 -1.3942 -5.3739 -3.2222 27 1 -3.9456 -3.6705 -3.2715 28 1 -3.5336 -6.6901 -3.8613 29 1 -5.0699 -5.8455 -3.3867 30 1 -4.1706 -6.0036 -6.1261 31 1 -5.1479 -4.6058 -5.4997 32 1 -2.9918 -3.4347 -5.5167 33 1 -2.0680 -4.9907 -5.3610 34 1 -0.1479 -1.4138 -1.5717 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216038042.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:50 Heat of formation + Delta-G solvation = -62.318177 kcal Electronic energy + Delta-G solvation = -17624.579723 eV Core-core repulsion = 14629.988428 eV Total energy + Delta-G solvation = -2994.591295 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.80157 -39.32022 -38.09398 -36.09315 -33.46639 -29.66711 -29.36917 -27.52448 -25.59468 -25.56361 -22.90480 -21.18206 -20.66475 -19.34755 -18.03155 -16.22255 -16.08475 -15.49073 -15.11885 -14.86909 -14.71828 -14.53576 -14.38156 -14.11904 -13.09570 -12.94595 -12.45999 -12.32067 -12.14881 -11.75041 -11.44570 -11.18085 -11.09834 -10.72160 -10.62877 -10.47328 -10.35665 -10.25568 -9.97642 -9.83782 -9.75884 -9.14644 -7.54695 -7.04171 -6.82191 -4.55840 2.62246 2.81514 3.02957 3.06748 3.12310 3.84867 3.95590 4.45973 4.61765 4.68479 4.80468 4.96180 5.45638 5.48987 5.56150 5.58142 5.69353 5.72165 5.76806 5.85948 5.94466 6.05649 6.18552 6.25489 6.47659 6.52274 6.61365 6.91613 7.07824 7.30720 7.48908 7.69068 7.86755 7.93352 8.26192 8.63939 8.73560 8.79639 10.05152 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.020530 B = 0.005875 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.520041 B = 4764.634582 C = 5929.253488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.076 3.924 3 Si 0.913 3.087 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.452 4.452 8 H 0.085 0.915 9 C 0.153 3.847 10 C -0.281 4.281 11 C 0.143 3.857 12 F -0.166 7.166 13 C -0.358 4.358 14 C 0.158 3.842 15 O -0.319 6.319 16 C 0.074 3.926 17 C -0.109 4.109 18 C -0.132 4.132 19 C -0.142 4.142 20 C -0.134 4.134 21 C -0.205 4.205 22 H 0.285 0.715 23 H 0.106 0.894 24 H 0.105 0.895 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.888 -4.618 -6.645 10.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.480 4.480 8 H 0.103 0.897 9 C 0.150 3.850 10 C -0.302 4.302 11 C 0.124 3.876 12 F -0.145 7.145 13 C -0.378 4.378 14 C 0.113 3.887 15 O -0.233 6.233 16 C -0.002 4.002 17 C -0.127 4.127 18 C -0.170 4.170 19 C -0.180 4.180 20 C -0.172 4.172 21 C -0.225 4.225 22 H 0.096 0.904 23 H 0.124 0.876 24 H 0.123 0.877 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.117 0.883 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.181 -4.339 -6.691 10.090 hybrid contribution 0.402 0.213 0.261 0.525 sum -5.779 -4.126 -6.430 9.579 Atomic orbital electron populations 1.69844 1.07710 1.29742 1.32811 1.25997 0.94783 1.01642 0.92010 0.86223 0.80463 0.80067 0.79529 1.19027 1.20141 1.18419 1.19609 0.98313 0.90810 1.39301 0.89707 1.17086 0.89602 0.91399 0.86889 1.20905 1.06406 0.91569 1.11293 1.17208 0.94487 0.79488 0.96443 1.91334 1.88868 1.45870 1.88436 1.20272 1.05220 0.96716 1.15612 1.18548 0.86028 0.93681 0.90404 1.86023 1.41651 1.30769 1.64855 1.22587 0.93639 0.86158 0.97834 1.22563 0.96281 0.99081 0.94824 1.22895 1.00082 0.97251 0.96760 1.22850 0.98457 0.99850 0.96808 1.23010 0.97583 1.00825 0.95765 1.20634 1.01086 0.95418 1.05393 0.90442 0.87580 0.87704 0.92781 0.92777 0.88311 0.90018 0.91300 0.91530 0.90233 0.91254 0.90063 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.76 10.96 55.55 0.61 -19.16 16 2 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 3 Si 0.91 18.09 29.60 -169.99 -5.03 13.06 16 4 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.45 -11.75 9.05 -37.74 -0.34 -12.09 16 8 H 0.08 2.09 7.91 -52.49 -0.41 1.68 16 9 C 0.15 4.11 5.57 -106.85 -0.60 3.51 16 10 C -0.28 -7.15 9.77 -38.78 -0.38 -7.53 16 11 C 0.14 3.49 7.28 -39.52 -0.29 3.20 16 12 F -0.17 -3.80 17.26 2.25 0.04 -3.76 16 13 C -0.36 -8.43 9.03 -39.07 -0.35 -8.78 16 14 C 0.16 3.86 6.67 -39.30 -0.26 3.60 16 15 O -0.32 -6.96 10.13 -19.41 -0.20 -7.16 16 16 C 0.07 1.25 4.58 37.16 0.17 1.42 16 17 C -0.11 -1.48 4.01 -89.81 -0.36 -1.84 16 18 C -0.13 -1.42 7.63 -25.92 -0.20 -1.62 16 19 C -0.14 -1.41 8.10 -25.78 -0.21 -1.62 16 20 C -0.13 -1.64 7.64 -25.78 -0.20 -1.84 16 21 C -0.21 -5.45 8.63 -38.71 -0.33 -5.78 16 22 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 23 H 0.11 2.54 8.06 -52.49 -0.42 2.12 16 24 H 0.10 2.21 6.27 -52.49 -0.33 1.89 16 25 H 0.05 0.90 7.65 -51.93 -0.40 0.50 16 26 H 0.05 0.88 7.36 -51.93 -0.38 0.50 16 27 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.99 7.90 -51.93 -0.41 0.58 16 34 H 0.13 3.58 6.16 -52.49 -0.32 3.25 16 LS Contribution 290.77 15.07 4.38 4.38 Total: -1.00 -27.44 290.77 -7.98 -35.42 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -4.35 Total: 4.82 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -3.43 Total: -27.60 kcal Atomic # 7 Polarization: -19.76 SS G_CDS: 0.61 Total: -19.16 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.20 Total: -7.16 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.04 Total: -3.76 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.44 -7.98 -35.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216038042.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.898 kcal (2) G-P(sol) polarization free energy of solvation -27.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds