Wall clock time and date at job start Mon Mar 30 2020 06:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86799 * 120.00309 * 2 1 4 4 H 1.48496 * 109.47204 * 270.00012 * 3 2 1 5 5 H 1.48499 * 109.46870 * 30.00052 * 3 2 1 6 6 H 1.48498 * 109.46975 * 149.99864 * 3 2 1 7 7 C 1.39935 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99871 * 197.74397 * 7 2 1 9 9 C 1.41409 * 120.00093 * 17.73594 * 7 2 1 10 10 C 1.40724 * 120.20684 * 204.35046 * 9 7 2 11 11 C 1.37854 * 119.83211 * 179.97438 * 10 9 7 12 12 F 1.35097 * 119.87162 * 180.02562 * 11 10 9 13 13 C 1.38789 * 120.25660 * 0.02562 * 11 10 9 14 14 C 1.39078 * 120.41577 * 359.97438 * 13 11 10 15 15 O 1.35895 * 119.91737 * 180.02562 * 14 13 11 16 16 C 1.42895 * 117.00305 * 359.97438 * 15 14 13 17 17 C 1.53006 * 109.47476 * 180.02562 * 16 15 14 18 18 C 1.53780 * 113.61484 * 185.00299 * 17 16 15 19 19 C 1.53783 * 87.17092 * 219.89295 * 18 17 16 20 20 C 1.53780 * 113.69004 * 87.46606 * 17 16 15 21 21 C 1.38152 * 120.16338 * 0.27577 * 14 13 11 22 22 H 0.96998 * 119.99821 * 359.97438 * 1 2 3 23 23 H 1.07999 * 120.07928 * 0.02562 * 10 9 7 24 24 H 1.07996 * 119.79195 * 180.02562 * 13 11 10 25 25 H 1.09000 * 109.47104 * 60.00274 * 16 15 14 26 26 H 1.09001 * 109.47514 * 300.00459 * 16 15 14 27 27 H 1.09003 * 112.84763 * 316.19442 * 17 16 15 28 28 H 1.08998 * 113.61754 * 334.48226 * 18 17 16 29 29 H 1.09003 * 113.61254 * 105.30086 * 18 17 16 30 30 H 1.08999 * 113.61413 * 140.02450 * 19 18 17 31 31 H 1.09000 * 113.60876 * 270.92416 * 19 18 17 32 32 H 1.08999 * 113.60796 * 254.54151 * 20 17 16 33 33 H 1.08999 * 113.61408 * 25.35740 * 20 17 16 34 34 H 1.07991 * 120.13210 * 179.72675 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0464 -1.4000 5 1 1.4399 2.6526 0.7001 6 1 3.5399 1.4400 0.7001 7 6 2.0079 -1.2119 -0.0005 8 1 3.0494 -1.2343 0.2845 9 6 1.3513 -2.4073 -0.3741 10 6 1.8269 -3.6496 0.0849 11 6 1.1804 -4.8100 -0.2837 12 9 1.6360 -6.0031 0.1570 13 6 0.0634 -4.7575 -1.1056 14 6 -0.4157 -3.5354 -1.5653 15 8 -1.5106 -3.4956 -2.3693 16 6 -2.1173 -4.7460 -2.7015 17 6 -3.3258 -4.5019 -3.6075 18 6 -4.1249 -5.7767 -3.9255 19 6 -4.2704 -5.2366 -5.3580 20 6 -2.9747 -4.4432 -5.1035 21 6 0.2219 -2.3622 -1.2109 22 1 -0.4850 0.8400 0.0004 23 1 2.6956 -3.6936 0.7250 24 1 -0.4375 -5.6712 -1.3894 25 1 -2.4420 -5.2461 -1.7890 26 1 -1.3942 -5.3739 -3.2222 27 1 -3.9456 -3.6705 -3.2715 28 1 -3.5336 -6.6901 -3.8613 29 1 -5.0699 -5.8455 -3.3867 30 1 -4.1706 -6.0036 -6.1261 31 1 -5.1479 -4.6058 -5.4997 32 1 -2.9918 -3.4347 -5.5167 33 1 -2.0680 -4.9907 -5.3610 34 1 -0.1479 -1.4138 -1.5717 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216038042.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:50 Heat of formation + Delta-G solvation = -75.258777 kcal Electronic energy + Delta-G solvation = -17625.140869 eV Core-core repulsion = 14629.988428 eV Total energy + Delta-G solvation = -2995.152442 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.69631 -40.80033 -39.44201 -37.86343 -35.35579 -31.55373 -31.01625 -29.09899 -27.46945 -26.49692 -24.18108 -23.07532 -22.42782 -20.36826 -19.84246 -18.07712 -17.66146 -16.90448 -16.83792 -16.67903 -16.31398 -16.23346 -15.98428 -15.56055 -14.75909 -14.57796 -13.80035 -13.59737 -13.44044 -13.34801 -12.87446 -12.81739 -12.67777 -12.40779 -12.16324 -12.03559 -11.70797 -11.63971 -11.46203 -11.24909 -11.07588 -10.96474 -9.50270 -8.95119 -8.70019 -6.54387 0.73060 0.85915 1.40148 1.51112 1.55056 2.18542 2.42667 2.58622 3.48719 3.62660 3.64625 3.72284 3.86712 3.96478 4.23779 4.35901 4.43362 4.49888 4.57244 4.69695 4.83016 4.84289 4.91868 4.98239 5.08591 5.10273 5.15008 5.29110 5.40185 5.54124 5.57179 5.74718 5.94345 5.97404 6.33845 6.72975 6.78806 6.88152 8.22334 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.020530 B = 0.005875 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.520041 B = 4764.634582 C = 5929.253488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.036 3.964 3 Si 0.991 3.009 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.254 1.254 7 C -0.482 4.482 8 H 0.089 0.911 9 C 0.131 3.869 10 C -0.300 4.300 11 C 0.142 3.858 12 F -0.156 7.156 13 C -0.357 4.357 14 C 0.162 3.838 15 O -0.332 6.332 16 C 0.066 3.934 17 C -0.118 4.118 18 C -0.123 4.123 19 C -0.129 4.129 20 C -0.141 4.141 21 C -0.235 4.235 22 H 0.294 0.706 23 H 0.113 0.887 24 H 0.131 0.869 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.435 -4.916 -7.337 10.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.181 4.181 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.177 1.177 7 C -0.510 4.510 8 H 0.107 0.893 9 C 0.128 3.872 10 C -0.320 4.320 11 C 0.123 3.877 12 F -0.135 7.135 13 C -0.377 4.377 14 C 0.117 3.883 15 O -0.246 6.246 16 C -0.009 4.009 17 C -0.137 4.137 18 C -0.160 4.160 19 C -0.166 4.166 20 C -0.179 4.179 21 C -0.255 4.255 22 H 0.105 0.895 23 H 0.131 0.869 24 H 0.149 0.851 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.743 -4.668 -7.387 11.038 hybrid contribution 0.499 0.230 0.459 0.716 sum -6.244 -4.438 -6.928 10.329 Atomic orbital electron populations 1.69895 1.09349 1.31311 1.32698 1.26930 0.95496 1.04981 0.90741 0.85070 0.79099 0.75055 0.79746 1.18494 1.18989 1.17703 1.19937 0.98780 0.91768 1.40466 0.89258 1.17403 0.90105 0.92372 0.87345 1.21036 1.07155 0.91737 1.12115 1.17288 0.94542 0.79596 0.96277 1.91351 1.88760 1.45100 1.88282 1.20486 1.04911 0.97385 1.14967 1.18584 0.86329 0.93367 0.90025 1.86025 1.40726 1.33851 1.64033 1.22980 0.94722 0.84479 0.98728 1.22687 0.95288 1.00840 0.94860 1.22904 1.00069 0.95868 0.97181 1.22812 0.97273 0.99761 0.96751 1.23070 0.99046 1.01062 0.94683 1.20586 1.02338 0.95593 1.06976 0.89529 0.86900 0.85122 0.92499 0.92041 0.89117 0.89231 0.90037 0.89810 0.89231 0.91902 0.90182 0.86925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.86 10.96 21.82 0.24 -41.62 16 2 C 0.04 1.78 5.14 85.25 0.44 2.22 16 3 Si 0.99 36.81 29.60 68.60 2.03 38.84 16 4 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 5 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 6 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16 7 C -0.48 -25.58 9.05 23.46 0.21 -25.37 16 8 H 0.09 4.49 7.91 -2.91 -0.02 4.46 16 9 C 0.13 7.21 5.57 -21.31 -0.12 7.09 16 10 C -0.30 -15.51 9.77 22.79 0.22 -15.28 16 11 C 0.14 6.91 7.28 22.31 0.16 7.07 16 12 F -0.16 -6.97 17.26 44.97 0.78 -6.19 16 13 C -0.36 -16.65 9.03 22.60 0.20 -16.45 16 14 C 0.16 8.04 6.67 22.45 0.15 8.19 16 15 O -0.33 -14.62 10.13 -92.37 -0.94 -15.56 16 16 C 0.07 2.17 4.58 71.98 0.33 2.50 16 17 C -0.12 -3.07 4.01 -10.27 -0.04 -3.11 16 18 C -0.12 -2.30 7.63 31.12 0.24 -2.07 16 19 C -0.13 -2.19 8.10 31.21 0.25 -1.94 16 20 C -0.14 -3.24 7.64 31.21 0.24 -3.00 16 21 C -0.23 -12.87 8.63 22.83 0.20 -12.68 16 22 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 23 H 0.11 5.50 8.06 -2.91 -0.02 5.47 16 24 H 0.13 5.30 6.27 -2.91 -0.02 5.28 16 25 H 0.06 1.83 7.65 -2.39 -0.02 1.81 16 26 H 0.06 1.93 7.36 -2.39 -0.02 1.91 16 27 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.09 1.56 8.10 -2.39 -0.02 1.54 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 1.84 7.90 -2.39 -0.02 1.83 16 34 H 0.11 6.47 6.16 -2.91 -0.02 6.45 16 Total: -1.00 -59.36 290.77 5.69 -53.67 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 1.10 Total: 23.69 kcal Atomic # 6 Polarization: -55.31 SS G_CDS: 2.48 Total: -52.83 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.24 Total: -41.62 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.94 Total: -15.56 kcal Atomic # 9 Polarization: -6.97 SS G_CDS: 0.78 Total: -6.19 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.84 kcal Total: -59.36 5.69 -53.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216038042.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.592 kcal (2) G-P(sol) polarization free energy of solvation -59.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds