Wall clock time and date at job start Mon Mar 30 2020 06:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86797 * 120.00012 * 2 1 4 4 H 1.48496 * 109.46979 * 270.00169 * 3 2 1 5 5 H 1.48501 * 109.46938 * 30.00138 * 3 2 1 6 6 H 1.48501 * 109.47282 * 150.00204 * 3 2 1 7 7 C 1.39881 * 119.99637 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99563 * 197.94805 * 7 2 1 9 9 C 1.41204 * 120.00555 * 17.94400 * 7 2 1 10 10 C 1.40859 * 120.16297 * 24.58613 * 9 7 2 11 11 C 1.36457 * 119.84645 * 179.97438 * 10 9 7 12 12 C 1.39257 * 120.20782 * 0.24737 * 11 10 9 13 13 O 1.35713 * 119.82690 * 179.74826 * 12 11 10 14 14 C 1.42898 * 117.00237 * 359.97438 * 13 12 11 15 15 C 1.52995 * 109.47178 * 180.02562 * 14 13 12 16 16 C 1.53781 * 113.61749 * 274.13779 * 15 14 13 17 17 C 1.53954 * 87.02340 * 220.05197 * 16 15 14 18 18 C 1.53780 * 87.11173 * 25.35908 * 17 16 15 19 19 C 1.39525 * 120.34482 * 359.49257 * 12 11 10 20 20 F 1.35099 * 119.92934 * 180.23317 * 19 12 11 21 21 C 1.36608 * 120.14331 * 0.51000 * 19 12 11 22 22 H 0.97000 * 119.99616 * 359.97438 * 1 2 3 23 23 H 1.07997 * 120.07410 * 359.94874 * 10 9 7 24 24 H 1.08001 * 119.89928 * 179.97438 * 11 10 9 25 25 H 1.09000 * 109.47336 * 300.00379 * 14 13 12 26 26 H 1.09000 * 109.46971 * 60.00142 * 14 13 12 27 27 H 1.09000 * 112.85330 * 45.33646 * 15 14 13 28 28 H 1.08999 * 113.61129 * 334.56755 * 16 15 14 29 29 H 1.09000 * 113.61687 * 105.46569 * 16 15 14 30 30 H 1.09011 * 113.53334 * 270.81134 * 17 16 15 31 31 H 1.08997 * 113.66830 * 139.93203 * 17 16 15 32 32 H 1.08994 * 113.61461 * 220.09469 * 18 17 16 33 33 H 1.08996 * 113.68786 * 89.20211 * 18 17 16 34 34 H 1.07995 * 120.10331 * 179.76839 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4903 2.0464 -1.4000 5 1 1.4403 2.6526 0.7001 6 1 3.5405 1.4402 0.7000 7 6 2.0082 -1.2114 -0.0005 8 1 3.0488 -1.2343 0.2877 9 6 1.3538 -2.4044 -0.3778 10 6 0.2251 -2.3569 -1.2193 11 6 -0.4020 -3.5138 -1.5803 12 6 0.0672 -4.7397 -1.1152 13 8 -0.5656 -5.8851 -1.4749 14 6 -1.7033 -5.7568 -2.3300 15 6 -2.2793 -7.1433 -2.6240 16 6 -1.6049 -7.8518 -3.8106 17 6 -3.0088 -8.3373 -4.2151 18 6 -3.5624 -7.1105 -3.4712 19 6 1.1876 -4.7969 -0.2857 20 9 1.6384 -5.9911 0.1568 21 6 1.8263 -3.6475 0.0846 22 1 -0.4849 0.8401 0.0004 23 1 -0.1431 -1.4070 -1.5776 24 1 -1.2677 -3.4783 -2.2251 25 1 -2.4604 -5.1460 -1.8383 26 1 -1.4038 -5.2818 -3.2643 27 1 -2.3605 -7.7657 -1.7328 28 1 -1.1557 -7.1670 -4.5299 29 1 -0.9322 -8.6565 -3.5138 30 1 -3.2888 -9.2872 -3.7595 31 1 -3.1872 -8.3133 -5.2901 32 1 -4.4677 -7.3176 -2.9007 33 1 -3.6500 -6.2220 -4.0964 34 1 2.6913 -3.6923 0.7297 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216038112.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:47 Heat of formation + Delta-G solvation = -58.156131 kcal Electronic energy + Delta-G solvation = -17628.229705 eV Core-core repulsion = 14633.818890 eV Total energy + Delta-G solvation = -2994.410815 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.63446 -39.27674 -38.06845 -36.27162 -33.38975 -29.68599 -29.38807 -28.08851 -25.62830 -24.94601 -23.07079 -21.14372 -20.69485 -19.35111 -17.68751 -17.00377 -16.04782 -15.53386 -15.10618 -15.04299 -14.87615 -14.41898 -14.10665 -13.52074 -13.24058 -12.70376 -12.46697 -12.23282 -12.09463 -11.87386 -11.52141 -11.24711 -11.08528 -10.94158 -10.67477 -10.50409 -10.33880 -10.26568 -10.05256 -9.82411 -9.62227 -9.09818 -7.66974 -7.04990 -6.87072 -4.40788 2.61744 2.71423 3.02746 3.06529 3.10450 3.86068 3.96972 4.45079 4.61224 4.68156 4.80229 4.96383 5.44130 5.47998 5.54220 5.60406 5.68821 5.71859 5.75758 5.85242 5.93091 6.04447 6.09084 6.25144 6.46739 6.56230 6.71679 6.86183 7.06924 7.10076 7.42973 7.70308 7.87930 7.94499 8.31134 8.52059 8.74565 8.81856 10.07740 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.034888 B = 0.004842 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.377269 B = 5781.190239 C = 6396.313168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.457 4.457 8 H 0.082 0.918 9 C 0.108 3.892 10 C -0.140 4.140 11 C -0.151 4.151 12 C -0.040 4.040 13 O -0.322 6.322 14 C 0.077 3.923 15 C -0.108 4.108 16 C -0.134 4.134 17 C -0.142 4.142 18 C -0.132 4.132 19 C 0.099 3.901 20 F -0.161 7.161 21 C -0.237 4.237 22 H 0.282 0.718 23 H 0.127 0.873 24 H 0.104 0.896 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.160 -6.689 -6.130 10.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.100 0.900 9 C 0.105 3.895 10 C -0.160 4.160 11 C -0.170 4.170 12 C -0.084 4.084 13 O -0.238 6.238 14 C 0.001 3.999 15 C -0.127 4.127 16 C -0.171 4.171 17 C -0.180 4.180 18 C -0.170 4.170 19 C 0.080 3.920 20 F -0.140 7.140 21 C -0.257 4.257 22 H 0.093 0.907 23 H 0.144 0.856 24 H 0.122 0.878 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.115 0.885 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.299 -6.758 -6.037 10.498 hybrid contribution 0.214 0.840 0.065 0.869 sum -5.085 -5.918 -5.972 9.826 Atomic orbital electron populations 1.69836 1.07624 1.29484 1.34837 1.25925 0.94763 1.01477 0.92104 0.86243 0.80488 0.80236 0.79403 1.19181 1.20252 1.18496 1.19507 0.98329 0.90955 1.39784 0.90033 1.17371 0.91388 0.91427 0.89268 1.21020 0.98541 0.96754 0.99636 1.20500 1.01194 0.91984 1.03359 1.18473 0.97831 0.85408 1.06684 1.85857 1.42665 1.29761 1.65472 1.22517 0.87531 0.96425 0.93406 1.22545 0.96017 0.96095 0.98020 1.22981 0.96208 1.00308 0.97641 1.22840 0.97078 0.97916 1.00150 1.22890 0.96806 0.98750 0.98520 1.16561 0.95040 0.80412 1.00016 1.91335 1.88876 1.45306 1.88462 1.20594 1.05325 0.91165 1.08661 0.90669 0.85569 0.87795 0.93024 0.93033 0.88513 0.90059 0.91336 0.90287 0.91525 0.91304 0.89950 0.86990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.75 10.96 55.54 0.61 -19.15 16 2 C 0.08 1.83 5.13 -17.34 -0.09 1.74 16 3 Si 0.91 18.04 29.60 -169.99 -5.03 13.01 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.46 -11.78 9.04 -37.84 -0.34 -12.12 16 8 H 0.08 2.02 7.91 -52.49 -0.41 1.60 16 9 C 0.11 2.84 5.57 -106.81 -0.60 2.25 16 10 C -0.14 -3.54 8.64 -39.23 -0.34 -3.88 16 11 C -0.15 -3.51 8.96 -39.85 -0.36 -3.87 16 12 C -0.04 -0.95 6.72 -38.72 -0.26 -1.21 16 13 O -0.32 -6.95 9.98 -18.84 -0.19 -7.13 16 14 C 0.08 1.29 4.56 37.15 0.17 1.46 16 15 C -0.11 -1.46 4.00 -89.81 -0.36 -1.82 16 16 C -0.13 -1.62 7.65 -25.83 -0.20 -1.82 16 17 C -0.14 -1.40 8.09 -25.83 -0.21 -1.61 16 18 C -0.13 -1.40 7.65 -25.92 -0.20 -1.60 16 19 C 0.10 2.47 7.26 -39.69 -0.29 2.19 16 20 F -0.16 -3.89 17.10 2.25 0.04 -3.85 16 21 C -0.24 -5.99 9.71 -39.20 -0.38 -6.37 16 22 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 23 H 0.13 3.22 6.16 -52.49 -0.32 2.90 16 24 H 0.10 2.11 6.27 -52.49 -0.33 1.78 16 25 H 0.05 0.85 7.65 -51.93 -0.40 0.46 16 26 H 0.05 0.83 7.38 -51.93 -0.38 0.45 16 27 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.08 0.99 7.92 -51.93 -0.41 0.58 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 34 H 0.11 2.66 8.06 -52.49 -0.42 2.24 16 LS Contribution 290.38 15.07 4.38 4.38 Total: -1.00 -27.44 290.38 -7.99 -35.44 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -4.35 Total: 3.97 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: -3.45 Total: -26.66 kcal Atomic # 7 Polarization: -19.75 SS G_CDS: 0.61 Total: -19.15 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.19 Total: -7.13 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.04 Total: -3.85 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.44 -7.99 -35.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216038112.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.720 kcal (2) G-P(sol) polarization free energy of solvation -27.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds