Wall clock time and date at job start Mon Mar 30 2020 06:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86797 * 120.00012 * 2 1 4 4 H 1.48496 * 109.46979 * 270.00169 * 3 2 1 5 5 H 1.48501 * 109.46938 * 30.00138 * 3 2 1 6 6 H 1.48501 * 109.47282 * 150.00204 * 3 2 1 7 7 C 1.39881 * 119.99637 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99563 * 197.94805 * 7 2 1 9 9 C 1.41204 * 120.00555 * 17.94400 * 7 2 1 10 10 C 1.40859 * 120.16297 * 24.58613 * 9 7 2 11 11 C 1.36457 * 119.84645 * 179.97438 * 10 9 7 12 12 C 1.39257 * 120.20782 * 0.24737 * 11 10 9 13 13 O 1.35713 * 119.82690 * 179.74826 * 12 11 10 14 14 C 1.42898 * 117.00237 * 359.97438 * 13 12 11 15 15 C 1.52995 * 109.47178 * 180.02562 * 14 13 12 16 16 C 1.53781 * 113.61749 * 274.13779 * 15 14 13 17 17 C 1.53954 * 87.02340 * 220.05197 * 16 15 14 18 18 C 1.53780 * 87.11173 * 25.35908 * 17 16 15 19 19 C 1.39525 * 120.34482 * 359.49257 * 12 11 10 20 20 F 1.35099 * 119.92934 * 180.23317 * 19 12 11 21 21 C 1.36608 * 120.14331 * 0.51000 * 19 12 11 22 22 H 0.97000 * 119.99616 * 359.97438 * 1 2 3 23 23 H 1.07997 * 120.07410 * 359.94874 * 10 9 7 24 24 H 1.08001 * 119.89928 * 179.97438 * 11 10 9 25 25 H 1.09000 * 109.47336 * 300.00379 * 14 13 12 26 26 H 1.09000 * 109.46971 * 60.00142 * 14 13 12 27 27 H 1.09000 * 112.85330 * 45.33646 * 15 14 13 28 28 H 1.08999 * 113.61129 * 334.56755 * 16 15 14 29 29 H 1.09000 * 113.61687 * 105.46569 * 16 15 14 30 30 H 1.09011 * 113.53334 * 270.81134 * 17 16 15 31 31 H 1.08997 * 113.66830 * 139.93203 * 17 16 15 32 32 H 1.08994 * 113.61461 * 220.09469 * 18 17 16 33 33 H 1.08996 * 113.68786 * 89.20211 * 18 17 16 34 34 H 1.07995 * 120.10331 * 179.76839 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4903 2.0464 -1.4000 5 1 1.4403 2.6526 0.7001 6 1 3.5405 1.4402 0.7000 7 6 2.0082 -1.2114 -0.0005 8 1 3.0488 -1.2343 0.2877 9 6 1.3538 -2.4044 -0.3778 10 6 0.2251 -2.3569 -1.2193 11 6 -0.4020 -3.5138 -1.5803 12 6 0.0672 -4.7397 -1.1152 13 8 -0.5656 -5.8851 -1.4749 14 6 -1.7033 -5.7568 -2.3300 15 6 -2.2793 -7.1433 -2.6240 16 6 -1.6049 -7.8518 -3.8106 17 6 -3.0088 -8.3373 -4.2151 18 6 -3.5624 -7.1105 -3.4712 19 6 1.1876 -4.7969 -0.2857 20 9 1.6384 -5.9911 0.1568 21 6 1.8263 -3.6475 0.0846 22 1 -0.4849 0.8401 0.0004 23 1 -0.1431 -1.4070 -1.5776 24 1 -1.2677 -3.4783 -2.2251 25 1 -2.4604 -5.1460 -1.8383 26 1 -1.4038 -5.2818 -3.2643 27 1 -2.3605 -7.7657 -1.7328 28 1 -1.1557 -7.1670 -4.5299 29 1 -0.9322 -8.6565 -3.5138 30 1 -3.2888 -9.2872 -3.7595 31 1 -3.1872 -8.3133 -5.2901 32 1 -4.4677 -7.3176 -2.9007 33 1 -3.6500 -6.2220 -4.0964 34 1 2.6913 -3.6923 0.7297 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216038112.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:46 Heat of formation + Delta-G solvation = -70.940237 kcal Electronic energy + Delta-G solvation = -17628.784066 eV Core-core repulsion = 14633.818890 eV Total energy + Delta-G solvation = -2994.965176 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.57825 -40.70255 -39.45306 -37.99357 -35.24733 -31.54868 -31.12166 -29.57262 -26.84222 -26.45786 -24.38889 -23.00257 -22.38428 -20.35069 -19.58725 -18.70530 -17.67419 -16.97460 -16.96057 -16.72570 -16.37416 -15.87808 -15.55872 -15.21927 -14.99586 -14.29493 -13.79857 -13.65355 -13.49969 -13.34433 -12.92119 -12.82236 -12.71791 -12.56128 -12.25954 -11.93766 -11.67665 -11.54637 -11.42493 -11.24529 -11.05277 -10.89985 -9.60069 -8.96496 -8.70363 -6.35250 0.74250 0.77762 1.41631 1.50561 1.54958 2.20979 2.47644 2.59111 3.50254 3.64820 3.65628 3.72567 3.87751 3.97553 4.17402 4.32864 4.42643 4.52221 4.68085 4.81019 4.83737 4.85019 4.92549 4.94662 5.08849 5.10246 5.19136 5.21315 5.33037 5.51966 5.57481 5.76642 5.94052 6.03814 6.42828 6.65747 6.82670 6.93431 8.27219 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.034888 B = 0.004842 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.377269 B = 5781.190239 C = 6396.313168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.039 3.961 3 Si 0.987 3.013 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.489 4.489 8 H 0.081 0.919 9 C 0.083 3.917 10 C -0.154 4.154 11 C -0.146 4.146 12 C -0.037 4.037 13 O -0.335 6.335 14 C 0.069 3.931 15 C -0.117 4.117 16 C -0.141 4.141 17 C -0.129 4.129 18 C -0.123 4.123 19 C 0.081 3.919 20 F -0.160 7.160 21 C -0.250 4.250 22 H 0.293 0.707 23 H 0.121 0.879 24 H 0.133 0.867 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.127 -6.379 -7.133 11.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.177 4.177 3 Si 0.807 3.193 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.517 4.517 8 H 0.099 0.901 9 C 0.080 3.920 10 C -0.173 4.173 11 C -0.165 4.165 12 C -0.082 4.082 13 O -0.251 6.251 14 C -0.006 4.006 15 C -0.135 4.135 16 C -0.178 4.178 17 C -0.166 4.166 18 C -0.161 4.161 19 C 0.062 3.938 20 F -0.139 7.139 21 C -0.271 4.271 22 H 0.104 0.896 23 H 0.139 0.861 24 H 0.151 0.849 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.109 0.891 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.283 -6.475 -7.046 11.447 hybrid contribution 0.449 0.660 0.367 0.879 sum -5.834 -5.815 -6.678 10.604 Atomic orbital electron populations 1.69861 1.08988 1.31079 1.34528 1.26769 0.95523 1.04524 0.90926 0.85121 0.78983 0.75493 0.79672 1.18433 1.19156 1.18300 1.19772 0.98651 0.91990 1.41333 0.90053 1.17697 0.92230 0.92048 0.90024 1.21050 0.98915 0.97209 1.00165 1.20722 1.01597 0.91089 1.03075 1.18586 0.97429 0.86378 1.05809 1.85863 1.44096 1.28867 1.66314 1.22899 0.85992 0.98971 0.92754 1.22668 0.98126 0.94142 0.98601 1.23038 0.97589 1.00114 0.97084 1.22803 0.94684 0.97965 1.01191 1.22901 0.95727 0.99495 0.97944 1.16766 0.95847 0.80409 1.00816 1.91323 1.88940 1.45115 1.88516 1.20706 1.05860 0.91318 1.09208 0.89643 0.86144 0.84947 0.92777 0.92325 0.89136 0.90302 0.91912 0.89219 0.89910 0.90026 0.89275 0.86552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.71 10.96 21.82 0.24 -40.47 16 2 C 0.04 1.86 5.13 85.23 0.44 2.30 16 3 Si 0.99 36.35 29.60 68.60 2.03 38.38 16 4 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 5 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 6 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 7 C -0.49 -25.61 9.04 23.40 0.21 -25.40 16 8 H 0.08 4.11 7.91 -2.91 -0.02 4.08 16 9 C 0.08 4.44 5.57 -21.28 -0.12 4.32 16 10 C -0.15 -7.87 8.64 22.50 0.19 -7.67 16 11 C -0.15 -6.74 8.96 22.10 0.20 -6.55 16 12 C -0.04 -1.78 6.72 22.83 0.15 -1.63 16 13 O -0.34 -14.35 9.98 -90.34 -0.90 -15.25 16 14 C 0.07 2.22 4.56 71.98 0.33 2.55 16 15 C -0.12 -2.97 4.00 -10.27 -0.04 -3.01 16 16 C -0.14 -3.18 7.65 31.18 0.24 -2.94 16 17 C -0.13 -2.16 8.09 31.18 0.25 -1.91 16 18 C -0.12 -2.28 7.65 31.12 0.24 -2.04 16 19 C 0.08 4.11 7.26 22.20 0.16 4.27 16 20 F -0.16 -7.82 17.10 44.97 0.77 -7.05 16 21 C -0.25 -12.99 9.71 22.52 0.22 -12.77 16 22 H 0.29 13.00 8.30 -92.71 -0.77 12.23 16 23 H 0.12 6.23 6.16 -2.91 -0.02 6.21 16 24 H 0.13 5.22 6.27 -2.91 -0.02 5.20 16 25 H 0.05 1.71 7.65 -2.39 -0.02 1.69 16 26 H 0.06 1.80 7.38 -2.39 -0.02 1.79 16 27 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.08 1.81 7.92 -2.39 -0.02 1.79 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 1.54 8.10 -2.39 -0.02 1.52 16 34 H 0.12 5.72 8.06 -2.91 -0.02 5.69 16 Total: -1.00 -58.63 290.38 5.71 -52.92 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 1.10 Total: 21.95 kcal Atomic # 6 Polarization: -52.95 SS G_CDS: 2.47 Total: -50.48 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.24 Total: -40.47 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.90 Total: -15.25 kcal Atomic # 9 Polarization: -7.82 SS G_CDS: 0.77 Total: -7.05 kcal Atomic # 14 Polarization: 36.35 SS G_CDS: 2.03 Total: 38.38 kcal Total: -58.63 5.71 -52.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216038112.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.018 kcal (2) G-P(sol) polarization free energy of solvation -58.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds