Wall clock time and date at job start Mon Mar 30 2020 05:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37698 * 119.95471 * 2 1 4 4 C 1.39773 * 119.90590 * 180.29362 * 3 2 1 5 5 C 1.47468 * 120.09302 * 179.74969 * 4 3 2 6 6 O 1.21503 * 119.99861 * 359.97037 * 5 4 3 7 7 O 1.34739 * 119.99916 * 179.97438 * 5 4 3 8 8 C 1.39816 * 119.81400 * 359.72095 * 4 3 2 9 9 C 1.37659 * 119.90567 * 0.02562 * 8 4 3 10 10 C 1.38996 * 119.95290 * 179.74293 * 2 1 3 11 11 O 1.35699 * 119.90398 * 359.97438 * 10 2 1 12 12 C 1.42905 * 116.99648 * 179.72404 * 11 10 2 13 13 C 1.52999 * 109.46728 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46953 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00344 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99769 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00300 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46819 * 59.99744 * 18 16 14 20 20 H 1.48494 * 109.47285 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47196 * 300.00241 * 18 16 14 22 22 H 1.09000 * 109.47159 * 270.25592 * 1 2 3 23 23 H 1.08993 * 109.46866 * 30.25188 * 1 2 3 24 24 H 1.09003 * 109.46926 * 150.25886 * 1 2 3 25 25 H 1.08003 * 120.04356 * 0.02562 * 3 2 1 26 26 H 0.96700 * 117.00205 * 179.97438 * 7 5 4 27 27 H 1.07997 * 120.04487 * 179.97438 * 8 4 3 28 28 H 1.07993 * 119.95112 * 179.97438 * 9 8 4 29 29 H 1.09000 * 109.47187 * 300.00274 * 12 11 10 30 30 H 1.09001 * 109.46558 * 60.00321 * 12 11 10 31 31 H 1.09000 * 109.47486 * 300.00062 * 13 12 11 32 32 H 1.09001 * 109.47362 * 60.00784 * 13 12 11 33 33 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1946 1.1930 0.0000 4 6 3.5923 1.1919 -0.0062 5 6 4.3328 2.4671 -0.0118 6 8 3.7278 3.5209 -0.0116 7 8 5.6802 2.4638 -0.0173 8 6 4.2864 -0.0218 -0.0065 9 6 3.5913 -1.2100 -0.0012 10 6 2.2010 -1.2043 0.0054 11 8 1.5196 -2.3778 0.0112 12 6 2.2950 -3.5782 0.0104 13 6 1.3599 -4.7892 0.0168 14 6 2.1776 -6.0551 0.0166 15 1 3.2562 -6.0013 0.0128 16 6 1.5487 -7.2821 0.0213 17 7 0.2352 -7.3477 0.0265 18 14 2.5622 -8.8513 0.0204 19 1 3.4235 -8.8849 1.2297 20 1 1.6548 -10.0267 0.0267 21 1 3.4142 -8.8895 -1.1953 22 1 -0.3633 0.0046 1.0277 23 1 -0.3633 0.8877 -0.5177 24 1 -0.3633 -0.8923 -0.5098 25 1 1.6546 2.1284 0.0004 26 1 6.1213 3.3243 -0.0212 27 1 5.3664 -0.0271 -0.0117 28 1 4.1267 -2.1479 -0.0018 29 1 2.9197 -3.6066 -0.8823 30 1 2.9277 -3.6025 0.8977 31 1 0.7349 -4.7610 0.9093 32 1 0.7275 -4.7647 -0.8707 33 1 -0.2074 -8.2108 0.0302 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232377199.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:43 Heat of formation + Delta-G solvation = -124.661577 kcal Electronic energy + Delta-G solvation = -17235.513950 eV Core-core repulsion = 14225.846452 eV Total energy + Delta-G solvation = -3009.667497 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.57750 -39.65749 -37.23035 -36.14181 -33.52933 -32.85878 -30.77389 -29.84709 -26.90027 -25.46038 -24.00848 -22.42607 -20.96638 -20.48807 -18.10463 -17.92770 -17.02509 -16.16346 -15.77291 -15.75377 -15.50237 -14.64312 -14.45499 -13.82095 -13.53524 -13.41175 -13.04612 -12.48003 -12.32066 -12.26934 -11.81373 -11.79046 -11.43003 -11.41069 -10.93333 -10.81861 -10.69417 -10.58446 -9.98911 -9.75789 -9.39434 -8.93210 -8.51080 -8.07039 -6.16346 -4.21746 0.77623 1.30965 2.52628 2.95291 3.24921 3.29575 3.30815 3.59508 3.75072 4.35292 4.72288 4.83000 5.02373 5.15039 5.20263 5.27172 5.53072 5.68514 5.80906 5.87770 5.89322 5.89831 6.13729 6.24916 6.27849 6.34898 6.45866 6.53997 6.71081 7.37814 7.54177 7.67289 7.80138 7.88941 8.15296 8.83413 9.43154 10.95069 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.039674 B = 0.003968 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.582625 B = 7054.921769 C = 7734.752311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.141 4.141 3 C -0.016 4.016 4 C -0.187 4.187 5 C 0.534 3.466 6 O -0.526 6.526 7 O -0.515 6.515 8 C -0.021 4.021 9 C -0.227 4.227 10 C 0.186 3.814 11 O -0.303 6.303 12 C 0.060 3.940 13 C 0.026 3.974 14 C -0.530 4.530 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.900 3.100 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.139 0.861 26 H 0.411 0.589 27 H 0.137 0.863 28 H 0.141 0.859 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.843 15.806 -0.079 17.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.142 4.142 3 C -0.035 4.035 4 C -0.189 4.189 5 C 0.380 3.620 6 O -0.417 6.417 7 O -0.327 6.327 8 C -0.040 4.040 9 C -0.245 4.245 10 C 0.137 3.863 11 O -0.215 6.215 12 C -0.013 4.013 13 C -0.011 4.011 14 C -0.568 4.568 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.527 5.527 18 Si 0.727 3.273 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.095 0.905 25 H 0.157 0.843 26 H 0.269 0.731 27 H 0.155 0.845 28 H 0.159 0.841 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.107 15.497 -0.077 16.657 hybrid contribution 1.141 -0.435 0.009 1.221 sum 7.248 15.062 -0.068 16.715 Atomic orbital electron populations 1.20602 0.89743 1.03090 1.02585 1.19209 0.97099 0.89809 1.08056 1.20873 0.91805 0.97714 0.93077 1.18759 0.93140 0.90351 1.16621 1.20841 0.80090 0.89473 0.71573 1.90865 1.69596 1.33723 1.47525 1.84580 1.21362 1.40635 1.86074 1.21174 1.00189 0.90545 0.92061 1.21375 0.93274 0.99752 1.10124 1.19416 0.90476 0.87035 0.89355 1.86166 1.37320 1.12739 1.85228 1.23494 0.96051 0.81705 1.00100 1.19131 0.94720 0.88263 0.98991 1.20914 0.92968 0.90208 1.52713 0.92358 1.24981 0.94990 0.99325 0.94773 1.69956 1.07783 1.25555 1.49373 0.86535 0.79868 0.82161 0.78756 1.20059 1.21081 1.20054 0.91252 0.91748 0.90456 0.84286 0.73134 0.84550 0.84148 0.92657 0.92643 0.95297 0.95301 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 9.78 36.01 0.35 -0.96 16 2 C -0.14 -2.02 5.89 -104.54 -0.62 -2.64 16 3 C -0.02 -0.22 9.23 -39.21 -0.36 -0.58 16 4 C -0.19 -2.46 5.87 -104.97 -0.62 -3.08 16 5 C 0.53 6.65 8.26 34.49 0.29 6.93 16 6 O -0.53 -7.77 17.13 -19.27 -0.33 -8.10 16 7 O -0.51 -4.73 12.67 -40.60 -0.51 -5.24 16 8 C -0.02 -0.27 9.61 -39.20 -0.38 -0.65 16 9 C -0.23 -3.24 9.01 -39.50 -0.36 -3.60 16 10 C 0.19 2.99 6.67 -39.01 -0.26 2.73 16 11 O -0.30 -5.69 9.16 -18.80 -0.17 -5.86 16 12 C 0.06 1.20 4.67 37.16 0.17 1.37 16 13 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 14 C -0.53 -14.26 9.11 -34.44 -0.31 -14.57 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -25.80 13.29 55.43 0.74 -25.07 16 18 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 20 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 23 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 24 H 0.08 1.08 7.52 -51.93 -0.39 0.69 16 25 H 0.14 1.67 7.64 -52.48 -0.40 1.27 16 26 H 0.41 1.82 9.11 45.56 0.42 2.24 16 27 H 0.14 1.43 7.60 -52.49 -0.40 1.03 16 28 H 0.14 1.91 6.28 -52.49 -0.33 1.58 16 29 H 0.06 1.04 7.65 -51.93 -0.40 0.64 16 30 H 0.06 1.04 7.65 -51.93 -0.40 0.64 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 294.03 15.07 4.43 4.43 Total: -1.00 -31.05 294.03 -6.33 -37.38 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -3.13 Total: -0.33 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -2.34 Total: -12.93 kcal Atomic # 7 Polarization: -25.80 SS G_CDS: 0.74 Total: -25.07 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -1.02 Total: -19.20 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.05 -6.33 -37.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232377199.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.280 kcal (2) G-P(sol) polarization free energy of solvation -31.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds