Wall clock time and date at job start Mon Mar 30 2020 05:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37698 * 119.95471 * 2 1 4 4 C 1.39773 * 119.90590 * 180.29362 * 3 2 1 5 5 C 1.47468 * 120.09302 * 179.74969 * 4 3 2 6 6 O 1.21503 * 119.99861 * 359.97037 * 5 4 3 7 7 O 1.34739 * 119.99916 * 179.97438 * 5 4 3 8 8 C 1.39816 * 119.81400 * 359.72095 * 4 3 2 9 9 C 1.37659 * 119.90567 * 0.02562 * 8 4 3 10 10 C 1.38996 * 119.95290 * 179.74293 * 2 1 3 11 11 O 1.35699 * 119.90398 * 359.97438 * 10 2 1 12 12 C 1.42905 * 116.99648 * 179.72404 * 11 10 2 13 13 C 1.52999 * 109.46728 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46953 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00344 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99769 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00300 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46819 * 59.99744 * 18 16 14 20 20 H 1.48494 * 109.47285 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47196 * 300.00241 * 18 16 14 22 22 H 1.09000 * 109.47159 * 270.25592 * 1 2 3 23 23 H 1.08993 * 109.46866 * 30.25188 * 1 2 3 24 24 H 1.09003 * 109.46926 * 150.25886 * 1 2 3 25 25 H 1.08003 * 120.04356 * 0.02562 * 3 2 1 26 26 H 0.96700 * 117.00205 * 179.97438 * 7 5 4 27 27 H 1.07997 * 120.04487 * 179.97438 * 8 4 3 28 28 H 1.07993 * 119.95112 * 179.97438 * 9 8 4 29 29 H 1.09000 * 109.47187 * 300.00274 * 12 11 10 30 30 H 1.09001 * 109.46558 * 60.00321 * 12 11 10 31 31 H 1.09000 * 109.47486 * 300.00062 * 13 12 11 32 32 H 1.09001 * 109.47362 * 60.00784 * 13 12 11 33 33 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1946 1.1930 0.0000 4 6 3.5923 1.1919 -0.0062 5 6 4.3328 2.4671 -0.0118 6 8 3.7278 3.5209 -0.0116 7 8 5.6802 2.4638 -0.0173 8 6 4.2864 -0.0218 -0.0065 9 6 3.5913 -1.2100 -0.0012 10 6 2.2010 -1.2043 0.0054 11 8 1.5196 -2.3778 0.0112 12 6 2.2950 -3.5782 0.0104 13 6 1.3599 -4.7892 0.0168 14 6 2.1776 -6.0551 0.0166 15 1 3.2562 -6.0013 0.0128 16 6 1.5487 -7.2821 0.0213 17 7 0.2352 -7.3477 0.0265 18 14 2.5622 -8.8513 0.0204 19 1 3.4235 -8.8849 1.2297 20 1 1.6548 -10.0267 0.0267 21 1 3.4142 -8.8895 -1.1953 22 1 -0.3633 0.0046 1.0277 23 1 -0.3633 0.8877 -0.5177 24 1 -0.3633 -0.8923 -0.5098 25 1 1.6546 2.1284 0.0004 26 1 6.1213 3.3243 -0.0212 27 1 5.3664 -0.0271 -0.0117 28 1 4.1267 -2.1479 -0.0018 29 1 2.9197 -3.6066 -0.8823 30 1 2.9277 -3.6025 0.8977 31 1 0.7349 -4.7610 0.9093 32 1 0.7275 -4.7647 -0.8707 33 1 -0.2074 -8.2108 0.0302 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232377199.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:43 Heat of formation + Delta-G solvation = -143.912819 kcal Electronic energy + Delta-G solvation = -17236.348746 eV Core-core repulsion = 14225.846452 eV Total energy + Delta-G solvation = -3010.502294 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.64035 -40.77252 -38.45723 -37.04164 -35.47635 -33.99959 -32.37762 -31.24175 -27.94751 -27.20806 -25.21342 -23.89658 -22.17258 -21.78326 -19.37600 -18.96900 -18.28112 -17.85983 -17.08029 -17.01257 -16.59114 -16.45548 -15.56389 -14.87780 -14.78110 -14.63695 -14.29137 -14.17231 -13.71526 -13.47484 -13.16131 -12.93229 -12.83844 -12.67427 -12.50946 -12.47781 -11.96872 -11.70192 -11.64513 -11.59791 -11.39167 -10.59979 -9.98524 -9.26158 -8.25460 -6.38908 -0.29980 0.25200 1.42896 1.46067 1.50390 1.53999 2.08906 2.20084 2.47016 2.68506 3.09593 3.67819 3.76031 4.03460 4.13668 4.20254 4.27838 4.34761 4.45379 4.71692 4.72944 4.81084 4.86760 5.10888 5.22679 5.24942 5.31736 5.39398 5.48632 5.58079 5.61285 5.74460 6.07466 6.40240 6.76138 7.00349 7.31494 8.87249 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.039674 B = 0.003968 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.582625 B = 7054.921769 C = 7734.752311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.145 4.145 3 C -0.017 4.017 4 C -0.189 4.189 5 C 0.542 3.458 6 O -0.552 6.552 7 O -0.504 6.504 8 C -0.013 4.013 9 C -0.228 4.228 10 C 0.154 3.846 11 O -0.324 6.324 12 C 0.078 3.922 13 C 0.028 3.972 14 C -0.547 4.547 15 H 0.073 0.927 16 C 0.003 3.997 17 N -0.931 5.931 18 Si 0.973 3.027 19 H -0.264 1.264 20 H -0.285 1.285 21 H -0.264 1.264 22 H 0.074 0.926 23 H 0.088 0.912 24 H 0.057 0.943 25 H 0.152 0.848 26 H 0.433 0.567 27 H 0.163 0.837 28 H 0.147 0.853 29 H 0.067 0.933 30 H 0.067 0.933 31 H -0.001 1.001 32 H 0.000 1.000 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.187 16.619 -0.076 18.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.146 4.146 3 C -0.035 4.035 4 C -0.190 4.190 5 C 0.389 3.611 6 O -0.445 6.445 7 O -0.318 6.318 8 C -0.031 4.031 9 C -0.247 4.247 10 C 0.107 3.893 11 O -0.237 6.237 12 C 0.004 3.996 13 C -0.009 4.009 14 C -0.585 4.585 15 H 0.091 0.909 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.797 3.203 19 H -0.189 1.189 20 H -0.210 1.210 21 H -0.188 1.188 22 H 0.093 0.907 23 H 0.106 0.894 24 H 0.076 0.924 25 H 0.170 0.830 26 H 0.295 0.705 27 H 0.181 0.819 28 H 0.165 0.835 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.492 16.346 -0.074 18.421 hybrid contribution 0.455 -0.521 0.008 0.692 sum 8.947 15.825 -0.067 18.180 Atomic orbital electron populations 1.20628 0.89070 1.03273 1.03023 1.19406 0.97847 0.89639 1.07728 1.21021 0.92229 0.97645 0.92607 1.19005 0.93343 0.91171 1.15486 1.20621 0.80958 0.88568 0.70942 1.90867 1.70414 1.34431 1.48780 1.84520 1.19561 1.42544 1.85157 1.21396 1.01380 0.89562 0.90803 1.21502 0.92541 1.00798 1.09854 1.19695 0.91517 0.86313 0.91766 1.86089 1.37778 1.13252 1.86550 1.23028 0.94549 0.80777 1.01209 1.18958 0.94928 0.90862 0.96154 1.21388 0.93883 0.91047 1.52136 0.90926 1.26001 0.96096 1.03251 0.94203 1.70105 1.09796 1.26498 1.50617 0.85376 0.78211 0.77310 0.79424 1.18853 1.21018 1.18843 0.90713 0.89368 0.92397 0.83046 0.70471 0.81926 0.83549 0.91462 0.91440 0.98209 0.98208 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.61 9.78 71.24 0.70 -1.91 16 2 C -0.15 -4.08 5.89 -19.81 -0.12 -4.20 16 3 C -0.02 -0.42 9.23 22.51 0.21 -0.21 16 4 C -0.19 -4.52 5.87 -20.09 -0.12 -4.64 16 5 C 0.54 12.00 8.26 70.25 0.58 12.58 16 6 O -0.55 -15.06 17.13 19.83 0.34 -14.72 16 7 O -0.50 -7.44 12.67 -56.49 -0.72 -8.15 16 8 C -0.01 -0.30 9.61 22.51 0.22 -0.09 16 9 C -0.23 -6.19 9.01 22.32 0.20 -5.99 16 10 C 0.15 4.92 6.67 22.64 0.15 5.07 16 11 O -0.32 -12.46 9.16 -90.19 -0.83 -13.29 16 12 C 0.08 3.15 4.67 71.98 0.34 3.48 16 13 C 0.03 1.47 5.34 29.85 0.16 1.62 16 14 C -0.55 -29.67 9.11 25.60 0.23 -29.44 16 15 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 16 C 0.00 0.18 5.46 84.65 0.46 0.64 16 17 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 18 Si 0.97 42.31 29.54 68.60 2.03 44.33 16 19 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 22 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.09 1.75 8.08 -2.39 -0.02 1.73 16 24 H 0.06 1.67 7.52 -2.39 -0.02 1.66 16 25 H 0.15 3.37 7.64 -2.91 -0.02 3.35 16 26 H 0.43 2.25 9.11 -74.06 -0.67 1.58 16 27 H 0.16 2.80 7.60 -2.91 -0.02 2.78 16 28 H 0.15 3.73 6.28 -2.91 -0.02 3.71 16 29 H 0.07 2.50 7.65 -2.39 -0.02 2.48 16 30 H 0.07 2.51 7.65 -2.39 -0.02 2.49 16 31 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 33 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -67.42 294.03 4.58 -62.85 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 0.46 Total: 7.20 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: 3.01 Total: -23.07 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.28 Total: -55.15 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -1.20 Total: -36.16 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -67.42 4.58 -62.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232377199.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.066 kcal (2) G-P(sol) polarization free energy of solvation -67.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds