Wall clock time and date at job start Mon Mar 30 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21297 * 120.00460 * 2 1 4 4 C 1.46796 * 119.99753 * 179.72220 * 2 1 3 5 5 C 1.40029 * 120.19547 * 359.72756 * 4 2 1 6 6 C 1.38124 * 119.81762 * 179.74218 * 5 4 2 7 7 O 1.35991 * 119.88642 * 180.22746 * 6 5 4 8 8 C 1.42897 * 117.00009 * 180.29845 * 7 6 5 9 9 C 1.53005 * 109.46984 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.46940 * 180.02562 * 9 8 7 11 11 H 1.07997 * 119.99807 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99633 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99949 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 120.00265 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47356 * 89.99810 * 14 12 10 16 16 H 1.48503 * 109.47214 * 209.99912 * 14 12 10 17 17 H 1.48501 * 109.47193 * 329.99568 * 14 12 10 18 18 C 1.39042 * 120.22672 * 0.53199 * 6 5 4 19 19 C 1.38024 * 120.40497 * 359.71621 * 18 6 5 20 20 C 1.38663 * 120.17030 * 0.03010 * 19 18 6 21 21 O 1.35676 * 120.11545 * 179.97438 * 20 19 18 22 22 H 1.08997 * 109.47039 * 240.28141 * 1 2 3 23 23 H 1.09008 * 109.46832 * 0.27224 * 1 2 3 24 24 H 1.08992 * 109.47177 * 120.27692 * 1 2 3 25 25 H 1.07998 * 120.08716 * 359.97438 * 5 4 2 26 26 H 1.08996 * 109.47571 * 300.00117 * 8 7 6 27 27 H 1.08998 * 109.47074 * 60.00360 * 8 7 6 28 28 H 1.08996 * 109.46847 * 300.00297 * 9 8 7 29 29 H 1.08998 * 109.47136 * 60.00135 * 9 8 7 30 30 H 0.96992 * 120.00315 * 180.02562 * 13 12 10 31 31 H 1.08003 * 119.79925 * 179.70044 * 18 6 5 32 32 H 1.08000 * 119.91943 * 179.97438 * 19 18 6 33 33 H 0.96700 * 113.99567 * 270.02066 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2409 -1.2713 0.0062 5 6 1.5448 -2.4863 0.0178 6 6 2.2432 -3.6779 0.0182 7 8 1.5687 -4.8587 0.0248 8 6 2.3524 -6.0536 0.0314 9 6 1.4258 -7.2712 0.0376 10 6 2.2524 -8.5313 0.0452 11 1 3.3306 -8.4698 0.0451 12 6 1.6320 -9.7626 0.0522 13 7 2.3532 -10.8623 0.0583 14 14 -0.2330 -9.8688 0.0515 15 1 -0.7263 -9.9054 -1.3487 16 1 -0.6587 -11.1033 0.7587 17 1 -0.7966 -8.6823 0.7441 18 6 3.6337 -3.6744 0.0181 19 6 4.3291 -2.4822 0.0119 20 6 3.6448 -1.2762 0.0062 21 8 4.3296 -0.1049 0.0006 22 1 -0.3633 -0.5094 0.8925 23 1 -0.3633 1.0277 -0.0049 24 1 -0.3633 -0.5181 -0.8874 25 1 0.4649 -2.4915 0.0227 26 1 2.9813 -6.0806 -0.8585 27 1 2.9813 -6.0707 0.9214 28 1 0.7967 -7.2444 0.9272 29 1 0.7972 -7.2539 -0.8527 30 1 1.9168 -11.7285 0.0628 31 1 4.1728 -4.6102 0.0233 32 1 5.4091 -2.4886 0.0123 33 1 4.5284 0.2386 0.8823 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238137734.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:59 Heat of formation + Delta-G solvation = -101.178665 kcal Electronic energy + Delta-G solvation = -17324.209095 eV Core-core repulsion = 14315.559893 eV Total energy + Delta-G solvation = -3008.649202 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.56889 -39.15039 -37.91574 -35.92703 -33.38397 -32.19372 -30.99309 -29.46351 -28.68857 -25.44608 -23.88000 -22.29435 -20.96850 -19.90724 -18.34542 -17.91416 -16.72973 -16.36958 -15.77720 -15.59244 -15.41129 -14.89158 -14.57816 -14.21015 -14.14459 -13.58578 -12.98785 -12.75712 -12.67423 -12.40614 -12.33543 -11.99248 -11.54399 -11.24892 -10.89287 -10.84058 -10.28361 -10.08663 -9.90158 -9.72168 -9.42476 -9.21019 -8.69005 -8.02061 -6.19981 -4.21719 0.47293 1.23571 2.30329 3.23413 3.31122 3.35180 3.47332 3.54395 3.94718 4.13999 4.32862 4.65939 4.84821 4.98860 5.14034 5.21009 5.22138 5.27094 5.30101 5.69661 5.75515 5.78676 5.79241 5.87354 6.19158 6.23297 6.33673 6.44589 6.94744 7.13305 7.38922 7.51253 7.58361 7.71958 8.31123 8.80145 9.39873 10.92476 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.039853 B = 0.004176 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.413259 B = 6704.077429 C = 7378.177475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.396 3.604 3 O -0.447 6.447 4 C -0.167 4.167 5 C -0.103 4.103 6 C 0.125 3.875 7 O -0.316 6.316 8 C 0.070 3.930 9 C -0.008 4.008 10 C -0.530 4.530 11 H 0.075 0.925 12 C 0.073 3.927 13 N -0.897 5.897 14 Si 0.881 3.119 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.263 1.263 18 C -0.160 4.160 19 C -0.118 4.118 20 C 0.114 3.886 21 O -0.481 6.481 22 H 0.094 0.906 23 H 0.083 0.917 24 H 0.094 0.906 25 H 0.143 0.857 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.028 0.972 29 H 0.024 0.976 30 H 0.266 0.734 31 H 0.142 0.858 32 H 0.136 0.864 33 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.393 18.578 1.577 18.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.274 3.726 3 O -0.322 6.322 4 C -0.168 4.168 5 C -0.122 4.122 6 C 0.078 3.922 7 O -0.230 6.230 8 C -0.004 4.004 9 C -0.046 4.046 10 C -0.568 4.568 11 H 0.093 0.907 12 C -0.129 4.129 13 N -0.534 5.534 14 Si 0.708 3.292 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.188 1.188 18 C -0.179 4.179 19 C -0.136 4.136 20 C 0.069 3.931 21 O -0.291 6.291 22 H 0.113 0.887 23 H 0.102 0.898 24 H 0.113 0.887 25 H 0.160 0.840 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.160 0.840 32 H 0.154 0.846 33 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -1.324 18.820 0.973 18.892 hybrid contribution -0.603 -0.498 0.452 0.903 sum -1.926 18.323 1.426 18.479 Atomic orbital electron populations 1.22262 0.93713 1.04958 1.04826 1.22256 0.91554 0.87270 0.71534 1.90556 1.72103 1.33885 1.35641 1.20651 0.93659 0.94736 1.07786 1.20581 1.00520 0.88550 1.02504 1.19004 0.90536 0.87114 0.95565 1.86170 1.36976 1.12480 1.87340 1.23155 0.95260 0.81343 1.00638 1.19586 0.95912 0.91092 0.97986 1.20824 0.94834 0.88411 1.52681 0.90731 1.24932 0.98540 0.95453 0.94023 1.69885 1.35849 0.97773 1.49926 0.86754 0.85764 0.77934 0.78790 1.20019 1.21135 1.18757 1.21573 0.93487 0.99535 1.03293 1.21239 1.00694 0.90983 1.00726 1.18506 0.88593 0.85787 1.00237 1.84780 1.75195 1.35944 1.33164 0.88709 0.89812 0.88719 0.83956 0.92324 0.92309 0.95340 0.95758 0.92367 0.84026 0.84643 0.75587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.60 8.93 36.00 0.32 -1.27 16 2 C 0.40 4.66 7.22 -30.85 -0.22 4.44 16 3 O -0.45 -6.47 15.89 -16.40 -0.26 -6.73 16 4 C -0.17 -2.09 5.88 -104.96 -0.62 -2.71 16 5 C -0.10 -1.30 9.40 -38.95 -0.37 -1.66 16 6 C 0.12 1.84 6.67 -39.33 -0.26 1.58 16 7 O -0.32 -5.52 10.13 -19.71 -0.20 -5.72 16 8 C 0.07 1.32 4.68 37.16 0.17 1.49 16 9 C -0.01 -0.19 4.41 -27.88 -0.12 -0.31 16 10 C -0.53 -14.37 9.66 -34.44 -0.33 -14.70 16 11 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 12 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 13 N -0.90 -26.60 13.96 55.43 0.77 -25.83 16 14 Si 0.88 20.87 27.47 -169.99 -4.67 16.20 16 15 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 18 C -0.16 -2.17 9.02 -39.36 -0.36 -2.52 16 19 C -0.12 -1.44 9.97 -39.50 -0.39 -1.84 16 20 C 0.11 1.47 6.72 -38.61 -0.26 1.21 16 21 O -0.48 -5.95 11.57 -40.68 -0.47 -6.42 16 22 H 0.09 0.61 8.08 -51.93 -0.42 0.19 16 23 H 0.08 0.62 8.12 -51.92 -0.42 0.20 16 24 H 0.09 0.64 8.09 -51.93 -0.42 0.22 16 25 H 0.14 1.49 7.05 -52.49 -0.37 1.12 16 26 H 0.06 1.06 7.65 -51.93 -0.40 0.67 16 27 H 0.06 1.06 7.65 -51.93 -0.40 0.66 16 28 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 29 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 30 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.14 1.84 6.27 -52.48 -0.33 1.52 16 32 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.39 3.19 9.06 45.56 0.41 3.61 16 LS Contribution 288.89 15.07 4.35 4.35 Total: -1.00 -31.97 288.89 -6.13 -38.10 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -3.12 Total: 0.41 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -2.53 Total: -14.35 kcal Atomic # 7 Polarization: -26.60 SS G_CDS: 0.77 Total: -25.83 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.93 Total: -18.88 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.97 -6.13 -38.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238137734.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.082 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds