Wall clock time and date at job start Mon Mar 30 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21297 * 120.00460 * 2 1 4 4 C 1.46796 * 119.99753 * 179.72220 * 2 1 3 5 5 C 1.40029 * 120.19547 * 359.72756 * 4 2 1 6 6 C 1.38124 * 119.81762 * 179.74218 * 5 4 2 7 7 O 1.35991 * 119.88642 * 180.22746 * 6 5 4 8 8 C 1.42897 * 117.00009 * 180.29845 * 7 6 5 9 9 C 1.53005 * 109.46984 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.46940 * 180.02562 * 9 8 7 11 11 H 1.07997 * 119.99807 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99633 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99949 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 120.00265 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47356 * 89.99810 * 14 12 10 16 16 H 1.48503 * 109.47214 * 209.99912 * 14 12 10 17 17 H 1.48501 * 109.47193 * 329.99568 * 14 12 10 18 18 C 1.39042 * 120.22672 * 0.53199 * 6 5 4 19 19 C 1.38024 * 120.40497 * 359.71621 * 18 6 5 20 20 C 1.38663 * 120.17030 * 0.03010 * 19 18 6 21 21 O 1.35676 * 120.11545 * 179.97438 * 20 19 18 22 22 H 1.08997 * 109.47039 * 240.28141 * 1 2 3 23 23 H 1.09008 * 109.46832 * 0.27224 * 1 2 3 24 24 H 1.08992 * 109.47177 * 120.27692 * 1 2 3 25 25 H 1.07998 * 120.08716 * 359.97438 * 5 4 2 26 26 H 1.08996 * 109.47571 * 300.00117 * 8 7 6 27 27 H 1.08998 * 109.47074 * 60.00360 * 8 7 6 28 28 H 1.08996 * 109.46847 * 300.00297 * 9 8 7 29 29 H 1.08998 * 109.47136 * 60.00135 * 9 8 7 30 30 H 0.96992 * 120.00315 * 180.02562 * 13 12 10 31 31 H 1.08003 * 119.79925 * 179.70044 * 18 6 5 32 32 H 1.08000 * 119.91943 * 179.97438 * 19 18 6 33 33 H 0.96700 * 113.99567 * 270.02066 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2409 -1.2713 0.0062 5 6 1.5448 -2.4863 0.0178 6 6 2.2432 -3.6779 0.0182 7 8 1.5687 -4.8587 0.0248 8 6 2.3524 -6.0536 0.0314 9 6 1.4258 -7.2712 0.0376 10 6 2.2524 -8.5313 0.0452 11 1 3.3306 -8.4698 0.0451 12 6 1.6320 -9.7626 0.0522 13 7 2.3532 -10.8623 0.0583 14 14 -0.2330 -9.8688 0.0515 15 1 -0.7263 -9.9054 -1.3487 16 1 -0.6587 -11.1033 0.7587 17 1 -0.7966 -8.6823 0.7441 18 6 3.6337 -3.6744 0.0181 19 6 4.3291 -2.4822 0.0119 20 6 3.6448 -1.2762 0.0062 21 8 4.3296 -0.1049 0.0006 22 1 -0.3633 -0.5094 0.8925 23 1 -0.3633 1.0277 -0.0049 24 1 -0.3633 -0.5181 -0.8874 25 1 0.4649 -2.4915 0.0227 26 1 2.9813 -6.0806 -0.8585 27 1 2.9813 -6.0707 0.9214 28 1 0.7967 -7.2444 0.9272 29 1 0.7972 -7.2539 -0.8527 30 1 1.9168 -11.7285 0.0628 31 1 4.1728 -4.6102 0.0233 32 1 5.4091 -2.4886 0.0123 33 1 4.5284 0.2386 0.8823 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238137734.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:59 Heat of formation + Delta-G solvation = -122.037724 kcal Electronic energy + Delta-G solvation = -17325.113612 eV Core-core repulsion = 14315.559893 eV Total energy + Delta-G solvation = -3009.553719 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.59143 -40.26812 -38.94175 -37.02326 -35.33842 -33.14641 -32.77884 -30.31834 -29.78478 -27.09296 -25.03994 -23.32061 -22.63876 -20.97027 -19.38335 -19.28530 -18.41955 -17.47437 -17.04522 -16.65490 -16.52183 -16.21699 -15.80466 -15.53365 -15.10756 -14.82559 -14.51047 -14.35406 -13.83778 -13.48961 -13.09198 -13.03401 -12.96182 -12.62036 -12.43121 -12.21571 -11.88535 -11.73562 -11.51593 -11.41553 -10.79816 -10.64472 -10.19997 -9.11973 -8.33218 -6.40159 -0.50197 0.22446 1.36960 1.38724 1.40228 1.52243 2.21466 2.35041 2.56103 3.02507 3.07698 3.21235 3.69531 3.90605 4.14808 4.20239 4.25065 4.27538 4.35836 4.58697 4.67539 4.67921 4.84118 4.87783 5.09919 5.11122 5.21414 5.31320 5.33567 5.44028 5.56945 6.17219 6.38279 6.51379 6.66575 6.77455 7.25444 8.82493 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.039853 B = 0.004176 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.413259 B = 6704.077429 C = 7378.177475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.397 3.603 3 O -0.481 6.481 4 C -0.176 4.176 5 C -0.089 4.089 6 C 0.096 3.904 7 O -0.326 6.326 8 C 0.083 3.917 9 C -0.007 4.007 10 C -0.537 4.537 11 H 0.042 0.958 12 C 0.013 3.987 13 N -0.945 5.945 14 Si 0.949 3.051 15 H -0.266 1.266 16 H -0.283 1.283 17 H -0.246 1.246 18 C -0.164 4.164 19 C -0.118 4.118 20 C 0.112 3.888 21 O -0.492 6.492 22 H 0.115 0.885 23 H 0.089 0.911 24 H 0.111 0.889 25 H 0.167 0.833 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.030 0.970 29 H 0.028 0.972 30 H 0.269 0.731 31 H 0.142 0.858 32 H 0.155 0.845 33 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.129 20.079 1.665 20.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.277 3.723 3 O -0.358 6.358 4 C -0.178 4.178 5 C -0.107 4.107 6 C 0.050 3.950 7 O -0.240 6.240 8 C 0.008 3.992 9 C -0.044 4.044 10 C -0.575 4.575 11 H 0.060 0.940 12 C -0.185 4.185 13 N -0.584 5.584 14 Si 0.772 3.228 15 H -0.191 1.191 16 H -0.208 1.208 17 H -0.169 1.169 18 C -0.182 4.182 19 C -0.137 4.137 20 C 0.066 3.934 21 O -0.305 6.305 22 H 0.133 0.867 23 H 0.108 0.892 24 H 0.129 0.871 25 H 0.184 0.816 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.160 0.840 32 H 0.172 0.828 33 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -3.056 20.352 1.072 20.608 hybrid contribution 0.070 -0.850 0.431 0.956 sum -2.986 19.503 1.504 19.787 Atomic orbital electron populations 1.22299 0.90477 1.06020 1.06463 1.22739 0.93230 0.86232 0.70093 1.90549 1.73103 1.34704 1.37448 1.20876 0.93776 0.95304 1.07801 1.20769 1.01673 0.87539 1.00733 1.19231 0.91178 0.86667 0.97909 1.86082 1.36899 1.12668 1.88347 1.22744 0.94241 0.81152 1.01029 1.19445 0.95963 0.90988 0.98052 1.21145 0.94009 0.90550 1.51818 0.93961 1.25890 1.03941 0.95018 0.93688 1.70028 1.38172 0.98542 1.51682 0.85680 0.79301 0.78509 0.79352 1.19062 1.20828 1.16947 1.21652 0.93309 1.00079 1.03200 1.21396 1.01692 0.90321 1.00254 1.18749 0.89100 0.86097 0.99436 1.84727 1.75146 1.35800 1.34819 0.86689 0.89197 0.87101 0.81592 0.92130 0.91948 0.95132 0.95337 0.92172 0.84045 0.82752 0.73581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.49 8.93 71.23 0.64 -1.85 16 2 C 0.40 8.50 7.22 27.92 0.20 8.70 16 3 O -0.48 -13.29 15.89 17.90 0.28 -13.00 16 4 C -0.18 -4.06 5.88 -20.08 -0.12 -4.18 16 5 C -0.09 -2.02 9.40 22.68 0.21 -1.81 16 6 C 0.10 2.68 6.67 22.44 0.15 2.83 16 7 O -0.33 -10.87 10.13 -93.45 -0.95 -11.82 16 8 C 0.08 3.07 4.68 71.98 0.34 3.41 16 9 C -0.01 -0.31 4.41 29.85 0.13 -0.18 16 10 C -0.54 -29.50 9.66 25.60 0.25 -29.25 16 11 H 0.04 2.51 7.99 -2.91 -0.02 2.49 16 12 C 0.01 0.71 5.47 84.65 0.46 1.17 16 13 N -0.94 -57.13 13.96 21.45 0.30 -56.83 16 14 Si 0.95 42.43 27.47 68.60 1.88 44.31 16 15 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 17 H -0.25 -10.24 6.54 99.48 0.65 -9.59 16 18 C -0.16 -4.25 9.02 22.41 0.20 -4.05 16 19 C -0.12 -2.72 9.97 22.32 0.22 -2.50 16 20 C 0.11 2.70 6.72 22.90 0.15 2.86 16 21 O -0.49 -11.49 11.57 -68.95 -0.80 -12.28 16 22 H 0.11 1.04 8.08 -2.39 -0.02 1.02 16 23 H 0.09 1.07 8.12 -2.38 -0.02 1.05 16 24 H 0.11 1.10 8.09 -2.39 -0.02 1.08 16 25 H 0.17 2.90 7.05 -2.91 -0.02 2.87 16 26 H 0.06 2.19 7.65 -2.39 -0.02 2.17 16 27 H 0.06 2.23 7.65 -2.39 -0.02 2.21 16 28 H 0.03 1.35 7.20 -2.39 -0.02 1.34 16 29 H 0.03 1.25 7.57 -2.39 -0.02 1.23 16 30 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 31 H 0.14 3.61 6.27 -2.91 -0.02 3.59 16 32 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 33 H 0.40 6.13 9.06 -74.06 -0.67 5.46 16 Total: -1.00 -68.74 288.89 3.97 -64.77 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.41 Total: 9.72 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 2.84 Total: -24.86 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.30 Total: -56.83 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -1.46 Total: -37.11 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.88 Total: 44.31 kcal Total: -68.74 3.97 -64.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238137734.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.272 kcal (2) G-P(sol) polarization free energy of solvation -68.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds