Wall clock time and date at job start Mon Mar 30 2020 05:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76206 * 99.99858 * 2 1 4 4 N 1.31401 * 120.00160 * 0.02562 * 3 2 1 5 5 C 1.36928 * 119.99988 * 173.96684 * 4 3 2 6 6 C 1.39634 * 120.14916 * 124.50817 * 5 4 3 7 7 C 1.37952 * 119.84786 * 180.02562 * 6 5 4 8 8 C 1.38365 * 120.14975 * 359.97438 * 7 6 5 9 9 C 1.38367 * 120.30244 * 0.25774 * 8 7 6 10 10 C 1.37946 * 120.15188 * 359.48642 * 9 8 7 11 11 N 1.37329 * 119.99705 * 179.97438 * 3 2 1 12 12 C 1.46497 * 120.00443 * 354.62506 * 11 3 2 13 13 C 1.50705 * 109.47234 * 179.97438 * 12 11 3 14 14 H 1.07993 * 119.99908 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99748 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00202 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99760 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47289 * 60.00320 * 17 15 13 19 19 H 1.48507 * 109.47248 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47393 * 300.00107 * 17 15 13 21 21 H 1.09002 * 109.46690 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47119 * 300.00219 * 1 2 3 23 23 H 1.09001 * 109.47165 * 60.00108 * 1 2 3 24 24 H 1.08003 * 120.07946 * 359.97438 * 6 5 4 25 25 H 1.08001 * 119.92159 * 180.02562 * 7 6 5 26 26 H 1.07996 * 119.84688 * 179.97438 * 8 7 6 27 27 H 1.08002 * 119.92071 * 179.74539 * 9 8 7 28 28 H 1.08005 * 120.07340 * 180.25374 * 10 9 8 29 29 H 0.97001 * 119.99855 * 174.62865 * 11 3 2 30 30 H 1.08997 * 109.47277 * 299.99931 * 12 11 3 31 31 H 1.09000 * 109.46650 * 59.99939 * 12 11 3 32 32 H 0.97005 * 120.00154 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 1.1094 2.5799 0.0005 5 6 1.3430 3.9234 0.1251 6 6 0.8570 4.8119 -0.8362 7 6 1.0964 6.1641 -0.7047 8 6 1.8159 6.6405 0.3769 9 6 2.3045 5.7652 1.3306 10 6 2.0679 4.4111 1.2143 11 7 3.4064 2.2050 0.0005 12 6 4.5267 1.2686 0.1199 13 6 5.8253 2.0330 0.0940 14 1 5.8169 3.1087 -0.0014 15 6 7.0240 1.3589 0.1921 16 7 7.0343 0.0489 0.3078 17 14 8.6336 2.3063 0.1593 18 1 8.6671 3.2647 1.2931 19 1 9.7693 1.3570 0.2792 20 1 8.7441 3.0503 -1.1212 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.2956 4.4413 -1.6811 25 1 0.7207 6.8524 -1.4473 26 1 2.0008 7.7000 0.4747 27 1 2.8688 6.1434 2.1702 28 1 2.4463 3.7294 1.9616 29 1 3.5762 3.1568 -0.0781 30 1 4.4451 0.7222 1.0595 31 1 4.5028 0.5654 -0.7126 32 1 7.8777 -0.4253 0.3772 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238399952.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:45 Heat of formation + Delta-G solvation = 40.096073 kcal Electronic energy + Delta-G solvation = -15516.900248 eV Core-core repulsion = 12989.422801 eV Total energy + Delta-G solvation = -2527.477447 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.22954 -36.73652 -33.89799 -32.18797 -30.54878 -29.48603 -28.33871 -26.73468 -23.40944 -22.57073 -22.05700 -20.40788 -17.64372 -16.52739 -16.17300 -15.69208 -14.96050 -14.81782 -14.20095 -14.01357 -13.63866 -13.21460 -13.09140 -12.92910 -12.54453 -12.28695 -12.11193 -11.46613 -11.33990 -11.06908 -10.96089 -10.65714 -10.43745 -10.17503 -9.86430 -9.48057 -8.73184 -8.62662 -8.10559 -7.74942 -7.02936 -6.27130 -4.33776 1.51897 1.67480 1.74628 2.51305 2.74823 3.21319 3.25968 3.28218 4.12759 4.22943 4.51463 5.09905 5.21041 5.28262 5.32405 5.40278 5.46708 5.57407 5.76917 5.94195 6.04753 6.27336 6.41247 6.74942 6.83549 6.85275 6.96377 7.24670 7.25886 7.45541 7.74134 7.90068 8.12643 8.61900 8.78870 9.32624 10.82831 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.015823 B = 0.007781 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.184265 B = 3597.521923 C = 5134.341567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.020 6.020 3 C 0.409 3.591 4 N -0.627 5.627 5 C 0.152 3.848 6 C -0.141 4.141 7 C -0.103 4.103 8 C -0.158 4.158 9 C -0.097 4.097 10 C -0.170 4.170 11 N -0.702 5.702 12 C 0.238 3.762 13 C -0.543 4.543 14 H 0.062 0.938 15 C 0.068 3.932 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.275 1.275 21 H 0.097 0.903 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.117 0.883 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.400 0.600 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.519 4.485 -0.293 11.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.208 5.792 3 C 0.029 3.971 4 N -0.363 5.363 5 C 0.047 3.953 6 C -0.162 4.162 7 C -0.122 4.122 8 C -0.177 4.177 9 C -0.116 4.116 10 C -0.192 4.192 11 N -0.337 5.337 12 C 0.116 3.884 13 C -0.581 4.581 14 H 0.080 0.920 15 C -0.137 4.137 16 N -0.522 5.522 17 Si 0.731 3.269 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.200 1.200 21 H 0.116 0.884 22 H 0.106 0.894 23 H 0.107 0.893 24 H 0.135 0.865 25 H 0.134 0.866 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.238 0.762 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.351 3.109 -0.324 10.813 hybrid contribution 0.891 2.236 0.095 2.409 sum -9.460 5.346 -0.229 10.869 Atomic orbital electron populations 1.23466 0.95088 1.05354 1.07037 1.86159 1.06190 0.95484 1.91334 1.24649 0.84642 0.98363 0.89405 1.69548 1.26217 1.00495 1.40086 1.18628 0.93212 0.90456 0.93026 1.21054 1.03563 0.92754 0.98806 1.20936 0.98544 0.95047 0.97675 1.20964 1.01539 0.99142 0.96070 1.20958 0.98781 0.93174 0.98660 1.21713 1.01697 0.96079 0.99683 1.46329 1.03616 1.11629 1.72165 1.19379 0.82644 0.88755 0.97671 1.21060 0.90183 0.93731 1.53135 0.91956 1.24896 0.99389 0.94966 0.94407 1.69930 1.27415 1.06688 1.48187 0.86464 0.82070 0.79547 0.78861 1.19987 1.20911 1.19991 0.88432 0.89437 0.89325 0.86475 0.86625 0.86813 0.86588 0.86417 0.76176 0.94922 0.94907 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.66 101.05 0.98 -0.81 16 2 S -0.02 -0.35 21.46 -107.50 -2.31 -2.65 16 3 C 0.41 7.98 7.65 -87.50 -0.67 7.31 16 4 N -0.63 -11.83 9.28 -10.65 -0.10 -11.92 16 5 C 0.15 2.80 5.29 -84.55 -0.45 2.35 16 6 C -0.14 -2.33 9.99 -39.17 -0.39 -2.72 16 7 C -0.10 -1.49 10.03 -39.64 -0.40 -1.89 16 8 C -0.16 -2.26 10.04 -39.49 -0.40 -2.65 16 9 C -0.10 -1.51 10.03 -39.64 -0.40 -1.91 16 10 C -0.17 -3.03 7.93 -39.17 -0.31 -3.34 16 11 N -0.70 -15.08 5.09 -62.00 -0.32 -15.39 16 12 C 0.24 5.86 4.97 -5.19 -0.03 5.83 16 13 C -0.54 -14.49 9.28 -34.44 -0.32 -14.81 16 14 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 15 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 16 N -0.89 -24.81 13.29 55.43 0.74 -24.08 16 17 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 H 0.10 0.96 8.14 -51.91 -0.42 0.54 16 22 H 0.09 1.14 8.13 -51.92 -0.42 0.72 16 23 H 0.09 1.14 8.13 -51.92 -0.42 0.72 16 24 H 0.12 1.83 8.06 -52.48 -0.42 1.41 16 25 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 26 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 27 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 28 H 0.12 2.20 7.93 -52.48 -0.42 1.78 16 29 H 0.40 8.62 5.99 -40.82 -0.24 8.37 16 30 H 0.03 0.86 8.13 -51.93 -0.42 0.44 16 31 H 0.03 0.86 7.94 -51.93 -0.41 0.45 16 32 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 292.83 15.07 4.41 4.41 Total: -1.00 -28.08 292.83 -9.06 -37.14 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -3.99 Total: 7.76 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -2.48 Total: -10.90 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.32 Total: -51.39 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -2.31 Total: -2.65 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.08 -9.06 -37.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238399952.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.235 kcal (2) G-P(sol) polarization free energy of solvation -28.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds