Wall clock time and date at job start Mon Mar 30 2020 05:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76206 * 99.99858 * 2 1 4 4 N 1.31401 * 120.00160 * 0.02562 * 3 2 1 5 5 C 1.36928 * 119.99988 * 173.96684 * 4 3 2 6 6 C 1.39634 * 120.14916 * 124.50817 * 5 4 3 7 7 C 1.37952 * 119.84786 * 180.02562 * 6 5 4 8 8 C 1.38365 * 120.14975 * 359.97438 * 7 6 5 9 9 C 1.38367 * 120.30244 * 0.25774 * 8 7 6 10 10 C 1.37946 * 120.15188 * 359.48642 * 9 8 7 11 11 N 1.37329 * 119.99705 * 179.97438 * 3 2 1 12 12 C 1.46497 * 120.00443 * 354.62506 * 11 3 2 13 13 C 1.50705 * 109.47234 * 179.97438 * 12 11 3 14 14 H 1.07993 * 119.99908 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99748 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00202 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99760 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47289 * 60.00320 * 17 15 13 19 19 H 1.48507 * 109.47248 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47393 * 300.00107 * 17 15 13 21 21 H 1.09002 * 109.46690 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47119 * 300.00219 * 1 2 3 23 23 H 1.09001 * 109.47165 * 60.00108 * 1 2 3 24 24 H 1.08003 * 120.07946 * 359.97438 * 6 5 4 25 25 H 1.08001 * 119.92159 * 180.02562 * 7 6 5 26 26 H 1.07996 * 119.84688 * 179.97438 * 8 7 6 27 27 H 1.08002 * 119.92071 * 179.74539 * 9 8 7 28 28 H 1.08005 * 120.07340 * 180.25374 * 10 9 8 29 29 H 0.97001 * 119.99855 * 174.62865 * 11 3 2 30 30 H 1.08997 * 109.47277 * 299.99931 * 12 11 3 31 31 H 1.09000 * 109.46650 * 59.99939 * 12 11 3 32 32 H 0.97005 * 120.00154 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 1.1094 2.5799 0.0005 5 6 1.3430 3.9234 0.1251 6 6 0.8570 4.8119 -0.8362 7 6 1.0964 6.1641 -0.7047 8 6 1.8159 6.6405 0.3769 9 6 2.3045 5.7652 1.3306 10 6 2.0679 4.4111 1.2143 11 7 3.4064 2.2050 0.0005 12 6 4.5267 1.2686 0.1199 13 6 5.8253 2.0330 0.0940 14 1 5.8169 3.1087 -0.0014 15 6 7.0240 1.3589 0.1921 16 7 7.0343 0.0489 0.3078 17 14 8.6336 2.3063 0.1593 18 1 8.6671 3.2647 1.2931 19 1 9.7693 1.3570 0.2792 20 1 8.7441 3.0503 -1.1212 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.2956 4.4413 -1.6811 25 1 0.7207 6.8524 -1.4473 26 1 2.0008 7.7000 0.4747 27 1 2.8688 6.1434 2.1702 28 1 2.4463 3.7294 1.9616 29 1 3.5762 3.1568 -0.0781 30 1 4.4451 0.7222 1.0595 31 1 4.5028 0.5654 -0.7126 32 1 7.8777 -0.4253 0.3772 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238399952.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:44 Heat of formation + Delta-G solvation = 24.822849 kcal Electronic energy + Delta-G solvation = -15517.562545 eV Core-core repulsion = 12989.422801 eV Total energy + Delta-G solvation = -2528.139744 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.083 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.57571 -38.21374 -35.66614 -34.00198 -31.79544 -30.80822 -29.57696 -28.53936 -24.94965 -24.33528 -23.37338 -21.78418 -19.28918 -17.99253 -17.88008 -17.16798 -16.65447 -16.16312 -15.81001 -15.29790 -15.11803 -14.63271 -14.30884 -14.28768 -14.14604 -13.80999 -13.37200 -13.04679 -12.99683 -12.61986 -12.52476 -12.28987 -11.98374 -11.67716 -11.50032 -11.13529 -10.73567 -9.87851 -9.59600 -9.19941 -8.47686 -8.31906 -6.46704 0.17343 0.31908 0.49014 1.29140 1.34104 1.40282 1.42181 1.50570 2.31959 2.74558 2.95441 3.02659 3.97905 4.08276 4.12169 4.29464 4.41604 4.45079 4.58035 4.71182 4.88213 4.97226 5.03410 5.16603 5.22145 5.44039 5.53205 5.62863 5.65954 5.76560 5.97722 6.19696 6.37995 6.66364 7.17157 7.25528 8.78404 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.015823 B = 0.007781 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.184265 B = 3597.521923 C = 5134.341567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.047 6.047 3 C 0.396 3.604 4 N -0.617 5.617 5 C 0.116 3.884 6 C -0.149 4.149 7 C -0.099 4.099 8 C -0.148 4.148 9 C -0.104 4.104 10 C -0.185 4.185 11 N -0.710 5.710 12 C 0.261 3.739 13 C -0.562 4.562 14 H 0.063 0.937 15 C 0.018 3.982 16 N -0.917 5.917 17 Si 0.971 3.029 18 H -0.268 1.268 19 H -0.277 1.277 20 H -0.268 1.268 21 H 0.132 0.868 22 H 0.085 0.915 23 H 0.089 0.911 24 H 0.122 0.878 25 H 0.151 0.849 26 H 0.149 0.851 27 H 0.135 0.865 28 H 0.097 0.903 29 H 0.397 0.603 30 H 0.009 0.991 31 H 0.011 0.989 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.949 6.473 -0.688 12.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S 0.182 5.818 3 C 0.016 3.984 4 N -0.353 5.353 5 C 0.011 3.989 6 C -0.170 4.170 7 C -0.117 4.117 8 C -0.167 4.167 9 C -0.122 4.122 10 C -0.207 4.207 11 N -0.347 5.347 12 C 0.138 3.862 13 C -0.600 4.600 14 H 0.081 0.919 15 C -0.183 4.183 16 N -0.555 5.555 17 Si 0.795 3.205 18 H -0.193 1.193 19 H -0.202 1.202 20 H -0.193 1.193 21 H 0.150 0.850 22 H 0.104 0.896 23 H 0.108 0.892 24 H 0.140 0.860 25 H 0.169 0.831 26 H 0.167 0.833 27 H 0.153 0.847 28 H 0.115 0.885 29 H 0.235 0.765 30 H 0.027 0.973 31 H 0.029 0.971 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.836 5.124 -0.718 12.007 hybrid contribution 0.875 1.701 0.220 1.926 sum -9.961 6.825 -0.497 12.085 Atomic orbital electron populations 1.23532 0.91143 1.07554 1.06920 1.86225 1.10457 0.94123 1.91025 1.25028 0.83985 0.99581 0.89773 1.69622 1.25954 1.01212 1.38468 1.18895 0.95157 0.90449 0.94358 1.21253 1.03506 0.93695 0.98564 1.21352 0.97504 0.94561 0.98289 1.21408 0.99740 1.00693 0.94877 1.21256 0.98804 0.92374 0.99794 1.21654 1.02486 0.97067 0.99491 1.46014 1.03695 1.10826 1.74171 1.18849 0.83326 0.88586 0.95464 1.21404 0.91333 0.94021 1.53268 0.91878 1.25784 1.02881 0.95847 0.93759 1.70042 1.28453 1.08191 1.48833 0.85408 0.77699 0.78287 0.79109 1.19274 1.20242 1.19328 0.84961 0.89624 0.89189 0.85972 0.83135 0.83287 0.84717 0.88486 0.76495 0.97283 0.97083 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.99 9.66 113.37 1.09 -1.89 16 2 S -0.05 -1.61 21.46 -56.49 -1.21 -2.83 16 3 C 0.40 15.91 7.65 179.26 1.37 17.28 16 4 N -0.62 -23.59 9.28 -187.61 -1.74 -25.33 16 5 C 0.12 4.25 5.29 39.02 0.21 4.46 16 6 C -0.15 -4.73 9.99 22.54 0.23 -4.50 16 7 C -0.10 -2.54 10.03 22.23 0.22 -2.31 16 8 C -0.15 -3.73 10.04 22.33 0.22 -3.51 16 9 C -0.10 -3.06 10.03 22.23 0.22 -2.83 16 10 C -0.19 -6.64 7.93 22.54 0.18 -6.46 16 11 N -0.71 -31.76 5.09 -350.07 -1.78 -33.54 16 12 C 0.26 13.47 4.97 85.64 0.43 13.89 16 13 C -0.56 -30.70 9.28 25.60 0.24 -30.47 16 14 H 0.06 3.35 7.60 -2.91 -0.02 3.33 16 15 C 0.02 1.00 5.46 84.65 0.46 1.46 16 16 N -0.92 -52.39 13.29 21.45 0.28 -52.10 16 17 Si 0.97 42.29 29.54 68.60 2.03 44.32 16 18 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 19 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 21 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 22 H 0.08 2.15 8.13 -2.39 -0.02 2.13 16 23 H 0.09 2.20 8.13 -2.39 -0.02 2.18 16 24 H 0.12 3.65 8.06 -2.91 -0.02 3.63 16 25 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 26 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 27 H 0.13 3.38 8.06 -2.91 -0.02 3.35 16 28 H 0.10 3.79 7.93 -2.91 -0.02 3.77 16 29 H 0.40 17.73 5.99 -92.71 -0.56 17.18 16 30 H 0.01 0.51 8.13 -2.39 -0.02 0.49 16 31 H 0.01 0.62 7.94 -2.39 -0.02 0.61 16 32 H 0.27 14.52 8.31 -92.70 -0.77 13.75 16 Total: -1.00 -61.41 292.83 3.01 -58.41 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.56 Total: 25.96 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: 4.87 Total: -14.88 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -3.24 Total: -110.97 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -1.21 Total: -2.83 kcal Total: -61.41 3.01 -58.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238399952.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.228 kcal (2) G-P(sol) polarization free energy of solvation -61.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds