Wall clock time and date at job start Mon Mar 30 2020 06:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00374 * 2 1 4 4 H 1.48500 * 109.46963 * 269.99931 * 3 2 1 5 5 H 1.48496 * 109.47021 * 29.99595 * 3 2 1 6 6 H 1.48497 * 109.47266 * 149.99902 * 3 2 1 7 7 C 1.37879 * 119.99523 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00446 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99722 * 180.02562 * 7 2 1 10 10 C 1.50707 * 109.47127 * 180.02562 * 9 7 2 11 11 S 1.75879 * 125.20222 * 269.97671 * 10 9 7 12 12 C 1.75889 * 90.97049 * 180.02562 * 11 10 9 13 13 C 1.33389 * 109.59326 * 0.02562 * 12 11 10 14 14 C 1.33388 * 125.19940 * 90.00145 * 10 9 7 15 15 C 1.50693 * 122.54245 * 359.95437 * 14 10 9 16 16 C 1.52998 * 109.47444 * 240.00164 * 15 14 10 17 17 C 1.53000 * 109.47063 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47248 * 60.00140 * 17 16 15 19 19 C 1.52998 * 109.46974 * 299.99914 * 18 17 16 20 20 C 1.53000 * 109.46845 * 120.00317 * 15 14 10 21 21 H 0.97007 * 119.99411 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47123 * 60.00434 * 9 7 2 23 23 H 1.08995 * 109.47444 * 300.00033 * 9 7 2 24 24 H 1.07995 * 125.20405 * 179.73500 * 12 11 10 25 25 H 1.07998 * 122.54399 * 179.97438 * 13 12 11 26 26 H 1.08995 * 109.47374 * 0.02562 * 15 14 10 27 27 H 1.09003 * 109.47269 * 300.00253 * 16 15 14 28 28 H 1.08997 * 109.47198 * 60.00399 * 16 15 14 29 29 H 1.09003 * 109.47071 * 299.99556 * 17 16 15 30 30 H 1.09003 * 109.46799 * 180.02562 * 17 16 15 31 31 H 1.09004 * 109.47124 * 179.97438 * 18 17 16 32 32 H 1.09003 * 109.47106 * 59.99993 * 18 17 16 33 33 H 1.09003 * 109.47269 * 299.99979 * 19 18 17 34 34 H 1.09000 * 109.47031 * 180.02562 * 19 18 17 35 35 H 1.09003 * 109.47229 * 299.99968 * 20 15 14 36 36 H 1.08998 * 109.47780 * 60.00348 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0137 -2.6151 0.0010 11 16 4.3516 -3.5711 1.4381 12 6 4.8371 -4.9418 0.4485 13 6 4.7254 -4.6236 -0.8421 14 6 4.2704 -3.3397 -1.0890 15 6 4.0798 -2.8016 -2.4836 16 6 3.0606 -3.6657 -3.2289 17 6 2.8676 -3.1196 -4.6451 18 6 4.2037 -3.1501 -5.3900 19 6 5.2229 -2.2860 -4.6447 20 6 5.4157 -2.8316 -3.2288 21 1 -0.4849 0.8402 -0.0004 22 1 3.8744 -0.6802 0.8912 23 1 3.8751 -0.6806 -0.8888 24 1 5.1782 -5.8937 0.8277 25 1 4.9710 -5.3153 -1.6343 26 1 3.7167 -1.7753 -2.4306 27 1 3.4241 -4.6920 -3.2820 28 1 2.1089 -3.6443 -2.6981 29 1 2.5043 -2.0933 -4.5923 30 1 2.1412 -3.7350 -5.1759 31 1 4.0661 -2.7614 -6.3990 32 1 4.5670 -4.1764 -5.4427 33 1 4.8596 -1.2596 -4.5919 34 1 6.1746 -2.3073 -5.1756 35 1 6.1419 -2.2160 -2.6979 36 1 5.7793 -3.8578 -3.2820 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259339153.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:49 Heat of formation + Delta-G solvation = -5.323736 kcal Electronic energy + Delta-G solvation = -16483.239661 eV Core-core repulsion = 14057.333006 eV Total energy + Delta-G solvation = -2425.906655 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.109 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.10597 -36.49459 -33.27250 -31.23462 -30.40786 -30.31114 -26.69623 -23.63646 -22.21238 -21.88951 -21.33452 -19.57732 -17.31722 -16.81645 -16.36839 -15.18270 -14.69472 -14.19468 -13.87750 -13.82397 -13.11785 -12.91803 -12.69682 -12.58388 -11.96950 -11.86219 -11.78315 -11.55978 -11.20713 -10.82195 -10.72907 -10.53694 -10.40766 -10.36810 -10.07348 -9.87058 -9.77774 -9.57862 -9.40833 -8.60657 -7.78816 -7.61023 -6.09992 -4.09293 1.76604 2.35205 2.73700 3.25594 3.34009 3.36098 3.38903 4.38150 5.00605 5.07212 5.11600 5.22633 5.47954 5.56299 5.61956 5.72638 5.82885 5.84792 5.90058 5.92732 5.94328 6.25779 6.27407 6.29352 6.34074 6.42798 6.50436 6.56102 6.68000 6.78912 6.83073 6.92353 6.94755 7.24359 7.40923 7.62363 8.46009 8.95380 9.49491 11.02776 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.015257 B = 0.009796 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.797977 B = 2857.566258 C = 4027.244789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.871 3.129 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.510 4.510 8 H 0.075 0.925 9 C 0.045 3.955 10 C -0.095 4.095 11 S 0.066 5.934 12 C -0.249 4.249 13 C -0.111 4.111 14 C -0.135 4.135 15 C -0.021 4.021 16 C -0.104 4.104 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.108 4.108 21 H 0.264 0.736 22 H 0.027 0.973 23 H 0.036 0.964 24 H 0.151 0.849 25 H 0.126 0.874 26 H 0.088 0.912 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.395 -6.768 -6.378 13.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.698 3.302 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.548 4.548 8 H 0.094 0.906 9 C 0.006 3.994 10 C -0.212 4.212 11 S 0.331 5.669 12 C -0.384 4.384 13 C -0.142 4.142 14 C -0.145 4.145 15 C -0.041 4.041 16 C -0.142 4.142 17 C -0.158 4.158 18 C -0.154 4.154 19 C -0.157 4.157 20 C -0.146 4.146 21 H 0.074 0.926 22 H 0.045 0.955 23 H 0.054 0.946 24 H 0.169 0.831 25 H 0.144 0.856 26 H 0.106 0.894 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.153 -6.418 -4.778 12.927 hybrid contribution 0.368 0.494 -1.380 1.511 sum 10.521 -5.924 -6.157 13.553 Atomic orbital electron populations 1.69891 1.06165 1.26937 1.50476 1.24940 0.94704 0.98780 0.94505 0.86905 0.80526 0.84004 0.78767 1.20004 1.21119 1.18934 1.20874 0.87794 0.94743 1.51399 0.90638 1.18417 0.97528 0.86021 0.97472 1.24718 1.01431 1.01707 0.93353 1.84129 1.65283 1.05927 1.11591 1.25260 1.13128 1.02928 0.97075 1.19866 1.02109 0.96492 0.95762 1.18593 1.06325 0.94005 0.95570 1.19788 0.94503 1.00590 0.89255 1.21484 0.99767 0.98211 0.94722 1.21545 0.96498 1.01742 0.95971 1.21523 0.95870 0.99752 0.98270 1.21537 0.98467 0.99764 0.95950 1.21560 0.97417 1.00732 0.94868 0.92568 0.95452 0.94635 0.83108 0.85592 0.89359 0.92810 0.91290 0.91671 0.92488 0.92666 0.92461 0.91927 0.92619 0.92331 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 21.06 27.47 -169.99 -4.67 16.39 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.51 -14.19 9.65 -34.44 -0.33 -14.52 16 8 H 0.08 2.32 7.98 -52.49 -0.42 1.90 16 9 C 0.04 1.06 4.02 -29.03 -0.12 0.94 16 10 C -0.09 -2.00 5.69 -36.00 -0.21 -2.21 16 11 S 0.07 1.23 23.33 -107.50 -2.51 -1.27 16 12 C -0.25 -4.03 11.23 29.04 0.33 -3.70 16 13 C -0.11 -1.84 9.03 -41.20 -0.37 -2.21 16 14 C -0.13 -2.53 4.63 -106.25 -0.49 -3.02 16 15 C -0.02 -0.36 2.33 -91.78 -0.21 -0.57 16 16 C -0.10 -1.68 5.05 -26.73 -0.13 -1.81 16 17 C -0.12 -1.69 5.92 -26.73 -0.16 -1.85 16 18 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 19 C -0.12 -1.52 5.92 -26.76 -0.16 -1.67 16 20 C -0.11 -1.54 5.04 -26.76 -0.13 -1.68 16 21 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 22 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 23 H 0.04 0.83 6.13 -51.93 -0.32 0.51 16 24 H 0.15 1.99 8.06 -52.49 -0.42 1.57 16 25 H 0.13 1.79 7.74 -52.49 -0.41 1.38 16 26 H 0.09 1.75 6.18 -51.93 -0.32 1.43 16 27 H 0.05 0.79 7.72 -51.93 -0.40 0.39 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.76 7.72 -51.93 -0.40 0.36 16 LS Contribution 297.60 15.07 4.48 4.48 Total: -1.00 -29.00 297.60 -9.78 -38.78 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -5.61 Total: -0.20 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: -2.25 Total: -31.91 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.77 Total: -26.28 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.51 Total: -1.27 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.00 -9.78 -38.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259339153.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.454 kcal (2) G-P(sol) polarization free energy of solvation -28.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds