Wall clock time and date at job start Mon Mar 30 2020 06:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00374 * 2 1 4 4 H 1.48500 * 109.46963 * 269.99931 * 3 2 1 5 5 H 1.48496 * 109.47021 * 29.99595 * 3 2 1 6 6 H 1.48497 * 109.47266 * 149.99902 * 3 2 1 7 7 C 1.37879 * 119.99523 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00446 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99722 * 180.02562 * 7 2 1 10 10 C 1.50707 * 109.47127 * 180.02562 * 9 7 2 11 11 S 1.75879 * 125.20222 * 269.97671 * 10 9 7 12 12 C 1.75889 * 90.97049 * 180.02562 * 11 10 9 13 13 C 1.33389 * 109.59326 * 0.02562 * 12 11 10 14 14 C 1.33388 * 125.19940 * 90.00145 * 10 9 7 15 15 C 1.50693 * 122.54245 * 359.95437 * 14 10 9 16 16 C 1.52998 * 109.47444 * 240.00164 * 15 14 10 17 17 C 1.53000 * 109.47063 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47248 * 60.00140 * 17 16 15 19 19 C 1.52998 * 109.46974 * 299.99914 * 18 17 16 20 20 C 1.53000 * 109.46845 * 120.00317 * 15 14 10 21 21 H 0.97007 * 119.99411 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47123 * 60.00434 * 9 7 2 23 23 H 1.08995 * 109.47444 * 300.00033 * 9 7 2 24 24 H 1.07995 * 125.20405 * 179.73500 * 12 11 10 25 25 H 1.07998 * 122.54399 * 179.97438 * 13 12 11 26 26 H 1.08995 * 109.47374 * 0.02562 * 15 14 10 27 27 H 1.09003 * 109.47269 * 300.00253 * 16 15 14 28 28 H 1.08997 * 109.47198 * 60.00399 * 16 15 14 29 29 H 1.09003 * 109.47071 * 299.99556 * 17 16 15 30 30 H 1.09003 * 109.46799 * 180.02562 * 17 16 15 31 31 H 1.09004 * 109.47124 * 179.97438 * 18 17 16 32 32 H 1.09003 * 109.47106 * 59.99993 * 18 17 16 33 33 H 1.09003 * 109.47269 * 299.99979 * 19 18 17 34 34 H 1.09000 * 109.47031 * 180.02562 * 19 18 17 35 35 H 1.09003 * 109.47229 * 299.99968 * 20 15 14 36 36 H 1.08998 * 109.47780 * 60.00348 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0137 -2.6151 0.0010 11 16 4.3516 -3.5711 1.4381 12 6 4.8371 -4.9418 0.4485 13 6 4.7254 -4.6236 -0.8421 14 6 4.2704 -3.3397 -1.0890 15 6 4.0798 -2.8016 -2.4836 16 6 3.0606 -3.6657 -3.2289 17 6 2.8676 -3.1196 -4.6451 18 6 4.2037 -3.1501 -5.3900 19 6 5.2229 -2.2860 -4.6447 20 6 5.4157 -2.8316 -3.2288 21 1 -0.4849 0.8402 -0.0004 22 1 3.8744 -0.6802 0.8912 23 1 3.8751 -0.6806 -0.8888 24 1 5.1782 -5.8937 0.8277 25 1 4.9710 -5.3153 -1.6343 26 1 3.7167 -1.7753 -2.4306 27 1 3.4241 -4.6920 -3.2820 28 1 2.1089 -3.6443 -2.6981 29 1 2.5043 -2.0933 -4.5923 30 1 2.1412 -3.7350 -5.1759 31 1 4.0661 -2.7614 -6.3990 32 1 4.5670 -4.1764 -5.4427 33 1 4.8596 -1.2596 -4.5919 34 1 6.1746 -2.3073 -5.1756 35 1 6.1419 -2.2160 -2.6979 36 1 5.7793 -3.8578 -3.2820 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259339153.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:49 Heat of formation + Delta-G solvation = -19.881268 kcal Electronic energy + Delta-G solvation = -16483.870923 eV Core-core repulsion = 14057.333006 eV Total energy + Delta-G solvation = -2426.537917 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.109 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.43372 -37.76478 -35.31440 -32.95632 -31.72911 -31.55229 -28.38727 -25.24814 -23.44993 -23.34596 -22.79513 -20.73588 -19.00614 -18.72004 -17.91142 -16.56783 -16.17398 -15.89968 -15.02893 -14.95760 -14.78655 -14.55417 -14.30990 -13.97449 -13.64593 -13.17112 -13.00827 -12.92202 -12.82828 -12.32512 -12.22125 -11.96697 -11.93353 -11.85500 -11.67166 -11.60543 -11.16035 -10.94615 -10.85824 -10.78355 -9.26639 -9.09369 -8.31933 -6.36401 0.31627 0.90437 1.30021 1.32065 1.33942 1.44806 1.97936 2.31302 3.02275 3.86395 3.92294 4.00438 4.22365 4.34878 4.38023 4.46768 4.65302 4.67265 4.69919 4.74165 4.76770 4.87692 4.93292 5.02378 5.06921 5.19646 5.25972 5.31114 5.31803 5.40657 5.45513 5.50058 5.57212 5.61516 5.81441 5.90252 6.23581 6.67485 7.25996 8.84552 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.015257 B = 0.009796 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.797977 B = 2857.566258 C = 4027.244789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.014 3.986 3 Si 0.940 3.060 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.249 1.249 7 C -0.510 4.510 8 H 0.027 0.973 9 C 0.056 3.944 10 C -0.154 4.154 11 S 0.047 5.953 12 C -0.221 4.221 13 C -0.122 4.122 14 C -0.120 4.120 15 C -0.024 4.024 16 C -0.100 4.100 17 C -0.120 4.120 18 C -0.110 4.110 19 C -0.119 4.119 20 C -0.100 4.100 21 H 0.267 0.733 22 H 0.023 0.977 23 H 0.038 0.962 24 H 0.191 0.809 25 H 0.161 0.839 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.028 0.972 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.108 -7.977 -7.792 17.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.184 4.184 3 Si 0.763 3.237 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.173 1.173 7 C -0.549 4.549 8 H 0.046 0.954 9 C 0.017 3.983 10 C -0.270 4.270 11 S 0.311 5.689 12 C -0.355 4.355 13 C -0.152 4.152 14 C -0.132 4.132 15 C -0.045 4.045 16 C -0.138 4.138 17 C -0.157 4.157 18 C -0.147 4.147 19 C -0.157 4.157 20 C -0.138 4.138 21 H 0.076 0.924 22 H 0.041 0.959 23 H 0.056 0.944 24 H 0.208 0.792 25 H 0.179 0.821 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.878 -7.633 -6.189 16.199 hybrid contribution -0.527 0.718 -0.935 1.291 sum 12.351 -6.915 -7.124 15.846 Atomic orbital electron populations 1.70046 1.08108 1.28152 1.52185 1.25863 0.95543 1.02934 0.94054 0.85807 0.79589 0.78775 0.79534 1.18713 1.20573 1.17287 1.21021 0.90235 0.92921 1.50711 0.95419 1.18116 0.94488 0.88571 0.97098 1.24532 1.05639 1.01420 0.95454 1.84083 1.65825 1.07340 1.11612 1.25733 1.10584 1.02926 0.96306 1.20117 1.02251 0.95836 0.96983 1.19007 1.03820 0.94747 0.95594 1.19819 0.96701 0.98574 0.89395 1.21429 0.97481 0.99431 0.95413 1.21544 0.98575 1.00479 0.95137 1.21498 0.93936 1.00825 0.98485 1.21553 0.99916 0.98975 0.95217 1.21505 0.94983 1.02021 0.95299 0.92352 0.95904 0.94431 0.79186 0.82133 0.93122 0.90501 0.95340 0.93934 0.91169 0.90982 0.90615 0.93395 0.90017 0.92802 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.60 13.96 21.45 0.30 -59.30 16 2 C 0.01 0.80 5.47 84.66 0.46 1.26 16 3 Si 0.94 44.42 27.47 68.60 1.88 46.30 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 7 C -0.51 -30.03 9.65 25.60 0.25 -29.79 16 8 H 0.03 1.83 7.98 -2.91 -0.02 1.81 16 9 C 0.06 2.77 4.02 29.10 0.12 2.88 16 10 C -0.15 -6.63 5.69 24.59 0.14 -6.49 16 11 S 0.05 1.74 23.33 -56.49 -1.32 0.42 16 12 C -0.22 -6.47 11.23 66.72 0.75 -5.72 16 13 C -0.12 -3.67 9.03 21.22 0.19 -3.48 16 14 C -0.12 -4.47 4.63 -20.92 -0.10 -4.57 16 15 C -0.02 -0.82 2.33 -11.54 -0.03 -0.85 16 16 C -0.10 -3.18 5.05 30.59 0.15 -3.03 16 17 C -0.12 -3.26 5.92 30.59 0.18 -3.08 16 18 C -0.11 -2.32 5.92 30.59 0.18 -2.14 16 19 C -0.12 -2.69 5.92 30.58 0.18 -2.51 16 20 C -0.10 -2.63 5.04 30.58 0.15 -2.47 16 21 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 22 H 0.02 1.12 7.20 -2.38 -0.02 1.10 16 23 H 0.04 1.80 6.13 -2.39 -0.01 1.79 16 24 H 0.19 4.07 8.06 -2.91 -0.02 4.04 16 25 H 0.16 3.76 7.74 -2.91 -0.02 3.74 16 26 H 0.05 2.10 6.18 -2.39 -0.01 2.09 16 27 H 0.08 2.07 7.72 -2.39 -0.02 2.05 16 28 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 33 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.74 7.72 -2.39 -0.02 1.72 16 Total: -1.00 -66.71 297.60 4.49 -62.22 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 0.99 Total: 10.34 kcal Atomic # 6 Polarization: -62.61 SS G_CDS: 2.64 Total: -59.98 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: 0.30 Total: -59.30 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.30 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -1.32 Total: 0.42 kcal Total: -66.71 4.49 -62.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259339153.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.339 kcal (2) G-P(sol) polarization free energy of solvation -66.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds