Wall clock time and date at job start Mon Mar 30 2020 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.50703 * 109.47466 * 299.99910 * 3 2 1 5 5 H 1.07997 * 119.99722 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99873 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00006 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 120.00328 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47509 * 89.99743 * 8 6 4 10 10 H 1.48494 * 109.47205 * 210.00004 * 8 6 4 11 11 H 1.48501 * 109.47041 * 330.00003 * 8 6 4 12 12 C 1.50697 * 109.47239 * 240.00432 * 2 1 3 13 13 O 1.20833 * 120.00046 * 359.97438 * 12 2 1 14 14 O 1.34228 * 120.00167 * 180.02562 * 12 2 1 15 15 C 1.50698 * 109.47184 * 119.99766 * 2 1 3 16 16 C 1.38260 * 119.94745 * 239.73209 * 15 2 1 17 17 C 1.38141 * 120.05669 * 179.72999 * 16 15 2 18 18 C 1.38735 * 119.94101 * 0.54109 * 17 16 15 19 19 O 1.35907 * 120.05504 * 179.75257 * 18 17 16 20 20 C 1.38728 * 119.88956 * 359.73013 * 18 17 16 21 21 C 1.38141 * 119.94520 * 0.02562 * 20 18 17 22 22 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 24 24 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 25 25 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 26 26 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 27 27 H 0.97001 * 120.00117 * 180.02562 * 7 6 4 28 28 H 0.96700 * 117.00515 * 179.97438 * 14 12 2 29 29 H 1.08003 * 119.96761 * 359.97438 * 16 15 2 30 30 H 1.07997 * 120.03125 * 180.26982 * 17 16 15 31 31 H 0.96703 * 113.99498 * 269.97846 * 19 18 17 32 32 H 1.08002 * 120.02467 * 179.97438 * 20 18 17 33 33 H 1.07999 * 119.96998 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5376 2.1530 -1.2305 5 1 0.9171 1.6280 -1.9416 6 6 1.8710 3.4728 -1.4488 7 7 1.4323 4.0930 -2.5223 8 14 2.9461 4.3803 -0.2199 9 1 4.3736 4.2162 -0.5949 10 1 2.5954 5.8232 -0.2262 11 1 2.7239 3.8228 1.1385 12 6 2.0324 -0.7103 -1.2305 13 8 1.2472 -1.1699 -2.0257 14 8 3.3521 -0.8334 -1.4426 15 6 2.0324 -0.7103 1.2305 16 6 2.8318 -0.0390 2.1370 17 6 3.2889 -0.6863 3.2685 18 6 2.9545 -2.0145 3.4892 19 8 3.4071 -2.6551 4.5991 20 6 2.1569 -2.6876 2.5752 21 6 1.6981 -2.0343 1.4478 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6672 5.0215 -2.6762 28 1 3.6263 -1.2973 -2.2456 29 1 3.0958 0.9936 1.9623 30 1 3.9097 -0.1601 3.9786 31 1 4.2595 -3.0957 4.4787 32 1 1.8956 -3.7217 2.7446 33 1 1.0768 -2.5578 0.7362 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259611336.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:17 Heat of formation + Delta-G solvation = -117.186786 kcal Electronic energy + Delta-G solvation = -18492.450489 eV Core-core repulsion = 15483.107123 eV Total energy + Delta-G solvation = -3009.343366 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.40184 -39.21819 -37.13638 -35.54299 -34.59265 -32.32666 -30.99506 -28.91249 -27.57355 -24.82359 -23.22537 -22.14708 -21.56012 -19.16057 -18.38384 -17.63444 -16.98962 -16.06055 -15.73197 -15.38427 -14.83336 -14.46719 -14.06515 -13.70272 -13.35189 -13.27106 -12.79459 -12.25425 -12.12360 -12.05619 -11.79516 -11.46741 -11.10212 -10.92172 -10.87017 -10.54172 -10.42975 -10.06943 -9.85028 -9.73859 -9.17932 -8.86589 -8.62938 -8.34051 -6.12606 -4.13293 1.31074 1.47858 2.93692 3.24597 3.32044 3.32713 3.58489 3.87465 4.25477 4.35998 4.94728 5.04341 5.06524 5.20335 5.51514 5.55909 5.63093 5.80204 5.87450 6.07181 6.14734 6.34108 6.42127 6.48724 6.52020 6.80343 6.89186 6.91239 6.99375 7.04716 7.15253 7.60512 7.64555 8.39093 8.56546 8.91421 9.46979 10.99993 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.023320 B = 0.007848 C = 0.006521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.384427 B = 3567.143033 C = 4292.811006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.001 3.999 3 C -0.003 4.003 4 C -0.529 4.529 5 H 0.079 0.921 6 C 0.074 3.926 7 N -0.895 5.895 8 Si 0.875 3.125 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.264 1.264 12 C 0.514 3.486 13 O -0.525 6.525 14 O -0.511 6.511 15 C -0.070 4.070 16 C -0.088 4.088 17 C -0.144 4.144 18 C 0.093 3.907 19 O -0.502 6.502 20 C -0.145 4.145 21 C -0.101 4.101 22 H 0.047 0.953 23 H 0.063 0.937 24 H 0.084 0.916 25 H 0.035 0.965 26 H 0.029 0.971 27 H 0.265 0.735 28 H 0.399 0.601 29 H 0.139 0.861 30 H 0.127 0.873 31 H 0.386 0.614 32 H 0.125 0.875 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.939 -11.430 10.018 15.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.000 4.000 3 C -0.040 4.040 4 C -0.567 4.567 5 H 0.097 0.903 6 C -0.129 4.129 7 N -0.533 5.533 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.188 1.188 12 C 0.357 3.643 13 O -0.414 6.414 14 O -0.321 6.321 15 C -0.070 4.070 16 C -0.106 4.106 17 C -0.162 4.162 18 C 0.049 3.951 19 O -0.312 6.312 20 C -0.163 4.163 21 C -0.119 4.119 22 H 0.066 0.934 23 H 0.082 0.918 24 H 0.102 0.898 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.256 0.744 29 H 0.156 0.844 30 H 0.145 0.855 31 H 0.241 0.759 32 H 0.143 0.857 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.070 -10.959 10.317 15.592 hybrid contribution 1.217 0.150 -0.251 1.251 sum 5.287 -10.809 10.066 15.688 Atomic orbital electron populations 1.21691 0.90730 1.01143 1.03972 1.19442 0.97319 0.97175 0.86104 1.19801 0.96822 0.88214 0.99205 1.21079 1.32934 0.96742 1.05930 0.90337 1.24961 0.95455 0.97363 0.95104 1.69905 1.45144 1.11682 1.26575 0.86859 0.81263 0.79232 0.82464 1.20087 1.21208 1.18840 1.23073 0.79478 0.74729 0.87017 1.90630 1.56987 1.46861 1.46895 1.84563 1.26839 1.73148 1.47516 1.19846 0.97322 0.93792 0.96014 1.21232 0.95679 1.00925 0.92738 1.21406 1.02041 0.94655 0.98135 1.18457 0.98193 0.91368 0.87117 1.84821 1.41471 1.71494 1.33387 1.21281 1.00513 1.00340 0.94181 1.20953 0.99537 0.94242 0.97192 0.93385 0.91785 0.89755 0.94654 0.95300 0.92547 0.74442 0.84372 0.85512 0.75911 0.85700 0.85786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.26 7.32 37.16 0.27 -1.98 16 2 C 0.00 0.01 0.56 -156.81 -0.09 -0.07 16 3 C 0.00 -0.07 1.71 -27.88 -0.05 -0.12 16 4 C -0.53 -14.38 8.35 -34.44 -0.29 -14.66 16 5 H 0.08 2.36 6.64 -52.49 -0.35 2.01 16 6 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 7 N -0.90 -26.90 13.96 55.43 0.77 -26.13 16 8 Si 0.87 20.71 27.47 -169.99 -4.67 16.04 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 12 C 0.51 10.47 5.60 36.00 0.20 10.67 16 13 O -0.53 -11.71 16.74 -18.76 -0.31 -12.02 16 14 O -0.51 -9.06 13.24 -39.25 -0.52 -9.58 16 15 C -0.07 -1.17 4.69 -104.60 -0.49 -1.66 16 16 C -0.09 -1.40 8.97 -39.61 -0.36 -1.76 16 17 C -0.14 -1.99 9.99 -39.43 -0.39 -2.38 16 18 C 0.09 1.23 6.70 -39.22 -0.26 0.96 16 19 O -0.50 -5.66 13.50 -19.45 -0.26 -5.92 16 20 C -0.14 -1.91 9.99 -39.44 -0.39 -2.31 16 21 C -0.10 -1.51 8.81 -39.61 -0.35 -1.86 16 22 H 0.05 0.82 7.34 -51.93 -0.38 0.44 16 23 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.08 1.83 6.58 -51.93 -0.34 1.49 16 25 H 0.04 0.78 6.58 -51.93 -0.34 0.43 16 26 H 0.03 0.65 6.89 -51.93 -0.36 0.29 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.40 5.13 9.10 45.56 0.41 5.54 16 29 H 0.14 2.26 5.88 -52.48 -0.31 1.95 16 30 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 31 H 0.39 2.42 9.06 45.56 0.41 2.84 16 32 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 33 H 0.12 1.77 7.57 -52.49 -0.40 1.37 16 LS Contribution 282.05 15.07 4.25 4.25 Total: -1.00 -33.14 282.05 -5.12 -38.26 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -2.08 Total: 8.32 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -2.29 Total: -13.21 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 0.77 Total: -26.13 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -1.10 Total: -27.53 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.14 -5.12 -38.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259611336.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.925 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds