Wall clock time and date at job start Mon Mar 30 2020 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.50703 * 109.47466 * 299.99910 * 3 2 1 5 5 H 1.07997 * 119.99722 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99873 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00006 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 120.00328 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47509 * 89.99743 * 8 6 4 10 10 H 1.48494 * 109.47205 * 210.00004 * 8 6 4 11 11 H 1.48501 * 109.47041 * 330.00003 * 8 6 4 12 12 C 1.50697 * 109.47239 * 240.00432 * 2 1 3 13 13 O 1.20833 * 120.00046 * 359.97438 * 12 2 1 14 14 O 1.34228 * 120.00167 * 180.02562 * 12 2 1 15 15 C 1.50698 * 109.47184 * 119.99766 * 2 1 3 16 16 C 1.38260 * 119.94745 * 239.73209 * 15 2 1 17 17 C 1.38141 * 120.05669 * 179.72999 * 16 15 2 18 18 C 1.38735 * 119.94101 * 0.54109 * 17 16 15 19 19 O 1.35907 * 120.05504 * 179.75257 * 18 17 16 20 20 C 1.38728 * 119.88956 * 359.73013 * 18 17 16 21 21 C 1.38141 * 119.94520 * 0.02562 * 20 18 17 22 22 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 24 24 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 25 25 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 26 26 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 27 27 H 0.97001 * 120.00117 * 180.02562 * 7 6 4 28 28 H 0.96700 * 117.00515 * 179.97438 * 14 12 2 29 29 H 1.08003 * 119.96761 * 359.97438 * 16 15 2 30 30 H 1.07997 * 120.03125 * 180.26982 * 17 16 15 31 31 H 0.96703 * 113.99498 * 269.97846 * 19 18 17 32 32 H 1.08002 * 120.02467 * 179.97438 * 20 18 17 33 33 H 1.07999 * 119.96998 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5376 2.1530 -1.2305 5 1 0.9171 1.6280 -1.9416 6 6 1.8710 3.4728 -1.4488 7 7 1.4323 4.0930 -2.5223 8 14 2.9461 4.3803 -0.2199 9 1 4.3736 4.2162 -0.5949 10 1 2.5954 5.8232 -0.2262 11 1 2.7239 3.8228 1.1385 12 6 2.0324 -0.7103 -1.2305 13 8 1.2472 -1.1699 -2.0257 14 8 3.3521 -0.8334 -1.4426 15 6 2.0324 -0.7103 1.2305 16 6 2.8318 -0.0390 2.1370 17 6 3.2889 -0.6863 3.2685 18 6 2.9545 -2.0145 3.4892 19 8 3.4071 -2.6551 4.5991 20 6 2.1569 -2.6876 2.5752 21 6 1.6981 -2.0343 1.4478 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6672 5.0215 -2.6762 28 1 3.6263 -1.2973 -2.2456 29 1 3.0958 0.9936 1.9623 30 1 3.9097 -0.1601 3.9786 31 1 4.2595 -3.0957 4.4787 32 1 1.8956 -3.7217 2.7446 33 1 1.0768 -2.5578 0.7362 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259611336.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:17 Heat of formation + Delta-G solvation = -141.609435 kcal Electronic energy + Delta-G solvation = -18493.509534 eV Core-core repulsion = 15483.107123 eV Total energy + Delta-G solvation = -3010.402412 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.82874 -40.42415 -38.29066 -37.06105 -36.10518 -34.29771 -32.10944 -30.38096 -29.14221 -26.41606 -24.75790 -23.33790 -23.00469 -20.64011 -19.51380 -19.20319 -18.70836 -17.62718 -17.10569 -16.47757 -16.17701 -16.09587 -15.57529 -15.03682 -14.87878 -14.65016 -14.34448 -13.74915 -13.62445 -13.42344 -13.01897 -12.92261 -12.86951 -12.50617 -12.44063 -12.16555 -11.85518 -11.70383 -11.50832 -11.35620 -11.02882 -10.76435 -9.93380 -9.45612 -8.27573 -6.33488 0.22293 0.40454 1.33239 1.39085 1.40232 1.50602 2.24746 2.36895 2.71389 3.08090 3.32392 3.63913 3.88169 4.04583 4.07991 4.22063 4.43871 4.48429 4.63160 4.85992 4.91172 4.95758 5.08442 5.12495 5.23888 5.29978 5.34265 5.45128 5.61605 5.65560 5.68592 5.87761 6.23489 6.73009 6.90571 7.09931 7.30440 8.88789 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.023320 B = 0.007848 C = 0.006521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.384427 B = 3567.143033 C = 4292.811006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.001 3.999 3 C 0.005 3.995 4 C -0.529 4.529 5 H 0.032 0.968 6 C 0.009 3.991 7 N -0.949 5.949 8 Si 0.943 3.057 9 H -0.267 1.267 10 H -0.287 1.287 11 H -0.234 1.234 12 C 0.511 3.489 13 O -0.555 6.555 14 O -0.507 6.507 15 C -0.088 4.088 16 C -0.099 4.099 17 C -0.143 4.143 18 C 0.105 3.895 19 O -0.506 6.506 20 C -0.141 4.141 21 C -0.104 4.104 22 H 0.064 0.936 23 H 0.077 0.923 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.035 0.965 27 H 0.266 0.734 28 H 0.419 0.581 29 H 0.132 0.868 30 H 0.148 0.852 31 H 0.411 0.589 32 H 0.149 0.851 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.637 -12.565 13.077 19.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.000 4.000 3 C -0.033 4.033 4 C -0.567 4.567 5 H 0.050 0.950 6 C -0.188 4.188 7 N -0.589 5.589 8 Si 0.765 3.235 9 H -0.192 1.192 10 H -0.213 1.213 11 H -0.157 1.157 12 C 0.355 3.645 13 O -0.446 6.446 14 O -0.319 6.319 15 C -0.088 4.088 16 C -0.117 4.117 17 C -0.161 4.161 18 C 0.060 3.940 19 O -0.319 6.319 20 C -0.159 4.159 21 C -0.122 4.122 22 H 0.083 0.917 23 H 0.095 0.905 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.279 0.721 29 H 0.150 0.850 30 H 0.166 0.834 31 H 0.270 0.730 32 H 0.167 0.833 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.804 -12.135 13.386 18.977 hybrid contribution 0.704 0.368 -1.214 1.451 sum 6.508 -11.767 12.172 18.137 Atomic orbital electron populations 1.21627 0.91023 1.01866 1.02638 1.19342 0.97303 0.95802 0.87599 1.19676 0.96945 0.89677 0.96955 1.21308 1.31701 0.96899 1.06751 0.94964 1.25953 0.97156 0.98467 0.97213 1.70077 1.47435 1.12200 1.29210 0.85773 0.79153 0.77487 0.81042 1.19184 1.21326 1.15663 1.23344 0.79934 0.74279 0.86929 1.90610 1.57828 1.48315 1.47806 1.84505 1.25428 1.73147 1.48839 1.19584 0.99311 0.94682 0.95239 1.21211 0.96142 1.00812 0.93542 1.21588 1.01822 0.95035 0.97666 1.18508 0.97274 0.91237 0.86975 1.84765 1.43230 1.71507 1.32393 1.21507 0.99764 1.01383 0.93284 1.20974 0.99692 0.93517 0.98015 0.91686 0.90456 0.93546 0.93543 0.94649 0.92522 0.72118 0.85041 0.83389 0.73002 0.83292 0.85714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.44 7.32 71.98 0.53 -3.91 16 2 C 0.00 0.02 0.56 -53.67 -0.03 -0.01 16 3 C 0.00 0.21 1.71 29.85 0.05 0.26 16 4 C -0.53 -29.54 8.35 25.60 0.21 -29.32 16 5 H 0.03 2.06 6.64 -2.91 -0.02 2.04 16 6 C 0.01 0.53 5.47 84.65 0.46 1.00 16 7 N -0.95 -59.08 13.96 21.45 0.30 -58.78 16 8 Si 0.94 42.25 27.47 68.60 1.88 44.14 16 9 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 10 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.23 -9.27 6.54 99.48 0.65 -8.62 16 12 C 0.51 20.97 5.60 71.23 0.40 21.36 16 13 O -0.55 -25.42 16.74 21.94 0.37 -25.05 16 14 O -0.51 -17.66 13.24 -51.40 -0.68 -18.34 16 15 C -0.09 -2.81 4.69 -19.85 -0.09 -2.91 16 16 C -0.10 -2.90 8.97 22.25 0.20 -2.70 16 17 C -0.14 -3.42 9.99 22.37 0.22 -3.20 16 18 C 0.10 2.34 6.70 22.51 0.15 2.49 16 19 O -0.51 -9.06 13.50 -92.50 -1.25 -10.30 16 20 C -0.14 -3.22 9.99 22.36 0.22 -3.00 16 21 C -0.10 -2.86 8.81 22.25 0.20 -2.67 16 22 H 0.06 2.23 7.34 -2.39 -0.02 2.21 16 23 H 0.08 2.70 8.14 -2.39 -0.02 2.69 16 24 H 0.05 2.12 6.58 -2.39 -0.02 2.10 16 25 H 0.05 1.96 6.58 -2.39 -0.02 1.95 16 26 H 0.04 1.53 6.89 -2.39 -0.02 1.51 16 27 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 28 H 0.42 10.45 9.10 -74.06 -0.67 9.78 16 29 H 0.13 3.96 5.88 -2.91 -0.02 3.94 16 30 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 31 H 0.41 3.17 9.06 -74.06 -0.67 2.50 16 32 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 33 H 0.12 3.35 7.57 -2.91 -0.02 3.33 16 Total: -1.00 -73.26 282.05 2.90 -70.35 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -0.24 Total: 20.59 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: 2.52 Total: -22.60 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: 0.30 Total: -58.78 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -1.56 Total: -53.70 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.88 Total: 44.14 kcal Total: -73.26 2.90 -70.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259611336.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.256 kcal (2) G-P(sol) polarization free energy of solvation -73.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds