Wall clock time and date at job start Mon Mar 30 2020 06:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47255 * 2 1 4 4 C 1.50700 * 109.46932 * 59.99915 * 3 2 1 5 5 H 1.07998 * 120.00153 * 0.02562 * 4 3 2 6 6 C 1.37883 * 120.00142 * 180.02562 * 4 3 2 7 7 N 1.31509 * 119.99503 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00023 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.46906 * 60.00171 * 8 6 4 10 10 H 1.48498 * 109.46974 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47042 * 300.00065 * 8 6 4 12 12 C 1.50697 * 109.47491 * 119.99908 * 2 1 3 13 13 O 1.20833 * 119.99747 * 0.02562 * 12 2 1 14 14 O 1.34230 * 120.00262 * 179.72204 * 12 2 1 15 15 C 1.50700 * 109.47220 * 240.00092 * 2 1 3 16 16 C 1.38274 * 119.94174 * 119.72434 * 15 2 1 17 17 C 1.38146 * 120.04993 * 179.72451 * 16 15 2 18 18 C 1.38732 * 119.94819 * 0.57295 * 17 16 15 19 19 O 1.35896 * 120.05603 * 179.68313 * 18 17 16 20 20 C 1.38731 * 119.88658 * 359.70247 * 18 17 16 21 21 C 1.38151 * 119.94563 * 359.97438 * 20 18 17 22 22 H 1.08994 * 109.47405 * 300.00061 * 1 2 3 23 23 H 1.09003 * 109.47345 * 59.99969 * 1 2 3 24 24 H 1.09004 * 109.47066 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47452 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.46969 * 300.00261 * 3 2 1 27 27 H 0.97001 * 119.99361 * 180.02562 * 7 6 4 28 28 H 0.96699 * 116.99771 * 180.27188 * 14 12 2 29 29 H 1.07998 * 119.97367 * 359.97438 * 16 15 2 30 30 H 1.07998 * 120.02557 * 180.24978 * 17 16 15 31 31 H 0.96705 * 113.99702 * 270.01389 * 19 18 17 32 32 H 1.08002 * 120.03008 * 179.97438 * 20 18 17 33 33 H 1.07993 * 119.97166 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5376 2.1529 1.2305 5 1 0.9171 1.6279 1.9416 6 6 1.8703 3.4731 1.4485 7 7 2.6256 4.1125 0.5823 8 14 1.2470 4.3538 2.9733 9 1 1.7420 3.6542 4.1861 10 1 1.7421 5.7539 2.9734 11 1 -0.2380 4.3534 2.9730 12 6 2.0324 -0.7104 1.2304 13 8 1.2472 -1.1700 2.0256 14 8 3.3521 -0.8379 1.4400 15 6 2.0323 -0.7104 -1.2305 16 6 2.8225 -0.0356 -2.1427 17 6 3.2889 -0.6862 -3.2686 18 6 2.9542 -2.0143 -3.4896 19 8 3.4065 -2.6546 -4.5996 20 6 2.1565 -2.6874 -2.5756 21 6 1.6981 -2.0343 -1.4479 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1299 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 2.8599 5.0411 0.7358 28 1 3.6262 -1.3048 2.2412 29 1 3.0785 0.9998 -1.9729 30 1 3.9094 -0.1599 -3.9788 31 1 2.8160 -2.5844 -5.3622 32 1 1.8941 -3.7212 -2.7456 33 1 1.0768 -2.5577 -0.7364 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259611342.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:19 Heat of formation + Delta-G solvation = -143.830801 kcal Electronic energy + Delta-G solvation = -18430.115883 eV Core-core repulsion = 15419.617146 eV Total energy + Delta-G solvation = -3010.498737 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.79143 -40.41505 -38.26196 -37.05143 -36.08561 -34.24999 -32.06406 -30.07066 -28.82923 -26.44270 -24.96747 -23.33959 -23.13251 -20.66051 -19.39848 -19.14681 -18.48993 -17.45973 -17.14868 -16.41462 -16.27601 -16.17884 -15.54586 -15.04897 -14.72634 -14.46997 -14.14420 -13.87503 -13.49353 -13.17670 -13.01374 -12.84701 -12.80704 -12.65712 -12.42629 -12.27255 -12.19912 -11.64804 -11.44194 -11.20224 -10.98036 -10.57264 -9.92286 -9.43797 -8.22016 -6.30776 0.23737 0.41370 1.34121 1.39274 1.40818 1.48127 2.28353 2.39448 2.73090 3.13117 3.32374 3.71664 3.93198 4.08518 4.11246 4.31451 4.45419 4.53278 4.66100 4.91087 4.96309 5.02204 5.10762 5.26005 5.35189 5.41747 5.45863 5.50619 5.67666 5.71644 5.77112 5.89738 6.15911 6.79742 6.91116 7.12445 7.37379 8.88920 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.028974 B = 0.006720 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.166311 B = 4165.907145 C = 4668.118680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.010 4.010 3 C 0.050 3.950 4 C -0.540 4.540 5 H 0.052 0.948 6 C 0.015 3.985 7 N -0.921 5.921 8 Si 0.950 3.050 9 H -0.276 1.276 10 H -0.279 1.279 11 H -0.268 1.268 12 C 0.513 3.487 13 O -0.551 6.551 14 O -0.510 6.510 15 C -0.088 4.088 16 C -0.099 4.099 17 C -0.146 4.146 18 C 0.104 3.896 19 O -0.505 6.505 20 C -0.141 4.141 21 C -0.103 4.103 22 H 0.054 0.946 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.010 0.990 26 H 0.021 0.979 27 H 0.265 0.735 28 H 0.418 0.582 29 H 0.122 0.878 30 H 0.143 0.857 31 H 0.411 0.589 32 H 0.153 0.847 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.647 -11.620 -7.763 13.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.011 4.011 3 C 0.013 3.987 4 C -0.578 4.578 5 H 0.070 0.930 6 C -0.184 4.184 7 N -0.560 5.560 8 Si 0.775 3.225 9 H -0.201 1.201 10 H -0.204 1.204 11 H -0.193 1.193 12 C 0.358 3.642 13 O -0.442 6.442 14 O -0.322 6.322 15 C -0.088 4.088 16 C -0.117 4.117 17 C -0.164 4.164 18 C 0.060 3.940 19 O -0.318 6.318 20 C -0.159 4.159 21 C -0.121 4.121 22 H 0.073 0.927 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.028 0.972 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.278 0.722 29 H 0.140 0.860 30 H 0.161 0.839 31 H 0.270 0.730 32 H 0.170 0.830 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.419 -11.514 -7.601 13.803 hybrid contribution -0.314 0.758 1.209 1.461 sum -0.733 -10.756 -6.392 12.533 Atomic orbital electron populations 1.21609 0.90583 1.01916 1.02739 1.19541 0.97588 0.96487 0.87448 1.19026 0.95586 0.87411 0.96684 1.21456 1.31820 0.96934 1.07551 0.93021 1.25703 0.95119 0.98325 0.99282 1.70029 1.37415 1.11397 1.37157 0.85729 0.79121 0.77664 0.79962 1.20099 1.20434 1.19310 1.23312 0.79814 0.74189 0.86914 1.90588 1.57582 1.48301 1.47733 1.84566 1.25807 1.72872 1.48944 1.19650 0.99180 0.94721 0.95280 1.21198 0.96144 1.00594 0.93741 1.21565 1.01707 0.94399 0.98772 1.18477 0.95674 0.90181 0.89677 1.84759 1.50478 1.74953 1.21634 1.21517 0.98230 1.01393 0.94761 1.20996 0.99793 0.93307 0.98038 0.92711 0.91025 0.91513 0.97155 0.96052 0.92600 0.72185 0.86010 0.83906 0.72997 0.82977 0.85280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.25 7.32 71.98 0.53 -3.73 16 2 C -0.01 -0.39 0.56 -53.68 -0.03 -0.42 16 3 C 0.05 2.48 2.64 29.85 0.08 2.55 16 4 C -0.54 -29.62 7.80 25.60 0.20 -29.42 16 5 H 0.05 2.87 6.39 -2.91 -0.02 2.85 16 6 C 0.02 0.84 5.46 84.66 0.46 1.30 16 7 N -0.92 -53.47 13.29 21.45 0.28 -53.19 16 8 Si 0.95 43.96 29.54 68.60 2.03 45.99 16 9 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 12 C 0.51 21.34 5.60 71.23 0.40 21.74 16 13 O -0.55 -24.26 16.74 21.94 0.37 -23.90 16 14 O -0.51 -18.91 13.25 -51.41 -0.68 -19.59 16 15 C -0.09 -3.10 4.69 -19.85 -0.09 -3.20 16 16 C -0.10 -3.41 8.97 22.26 0.20 -3.21 16 17 C -0.15 -4.13 9.99 22.37 0.22 -3.91 16 18 C 0.10 2.62 6.70 22.51 0.15 2.78 16 19 O -0.50 -10.19 13.50 -92.38 -1.25 -11.44 16 20 C -0.14 -3.48 9.99 22.37 0.22 -3.26 16 21 C -0.10 -3.03 8.81 22.26 0.20 -2.84 16 22 H 0.05 2.32 6.58 -2.39 -0.02 2.31 16 23 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 24 H 0.07 2.22 7.34 -2.38 -0.02 2.20 16 25 H 0.01 0.55 7.50 -2.39 -0.02 0.53 16 26 H 0.02 1.10 7.50 -2.39 -0.02 1.09 16 27 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 28 H 0.42 10.94 9.10 -74.06 -0.67 10.27 16 29 H 0.12 4.71 5.88 -2.91 -0.02 4.69 16 30 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 31 H 0.41 3.95 9.06 -74.05 -0.67 3.27 16 32 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.13 3.56 7.57 -2.91 -0.02 3.54 16 Total: -1.00 -68.48 285.66 3.10 -65.38 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -0.19 Total: 18.37 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 2.54 Total: -21.61 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.28 Total: -53.19 kcal Atomic # 8 Polarization: -53.37 SS G_CDS: -1.56 Total: -54.93 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -68.48 3.10 -65.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259611342.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.454 kcal (2) G-P(sol) polarization free energy of solvation -68.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds