Wall clock time and date at job start Mon Mar 30 2020 06:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38218 * 120.01553 * 2 1 4 4 C 1.38225 * 120.02208 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.96961 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47318 * 90.00268 * 5 4 3 7 7 C 1.50696 * 109.47319 * 179.97438 * 6 5 4 8 8 O 1.20767 * 120.00036 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99869 * 180.02562 * 7 6 5 10 10 C 1.50698 * 109.47053 * 180.02562 * 9 7 6 11 11 H 1.08004 * 120.00216 * 359.97438 * 10 9 7 12 12 C 1.37872 * 120.00057 * 180.02562 * 10 9 7 13 13 N 1.31519 * 120.00093 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00094 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47258 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47460 * 119.99784 * 14 12 10 17 17 H 1.48502 * 109.47278 * 240.00128 * 14 12 10 18 18 C 1.38263 * 120.05445 * 359.97438 * 4 3 2 19 19 C 1.38176 * 120.02823 * 359.97438 * 18 4 3 20 20 C 1.38445 * 120.00815 * 179.97438 * 2 1 3 21 21 F 1.35093 * 120.02545 * 359.74916 * 20 2 1 22 22 H 1.08996 * 109.47218 * 270.02360 * 1 2 3 23 23 H 1.09004 * 109.46567 * 30.01967 * 1 2 3 24 24 H 1.08997 * 109.47335 * 150.01519 * 1 2 3 25 25 H 1.07992 * 119.98884 * 359.97438 * 3 2 1 26 26 H 1.09010 * 109.46909 * 209.99873 * 5 4 3 27 27 H 1.08995 * 109.47422 * 330.00215 * 5 4 3 28 28 H 1.09004 * 109.46822 * 300.00133 * 6 5 4 29 29 H 1.09004 * 109.46666 * 59.99658 * 6 5 4 30 30 H 1.08998 * 109.46859 * 299.99894 * 9 7 6 31 31 H 1.08994 * 109.47281 * 59.99813 * 9 7 6 32 32 H 0.97001 * 119.99849 * 179.97438 * 13 12 10 33 33 H 1.08000 * 119.98535 * 180.02562 * 18 4 3 34 34 H 1.08000 * 120.01901 * 180.02562 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5807 1.1970 0.0005 5 6 4.3333 2.5026 0.0000 6 6 4.5876 2.9454 1.4423 7 6 5.3408 4.2506 1.4417 8 8 5.6427 4.7731 0.3956 9 6 5.7173 4.9039 2.7465 10 6 6.4573 6.1873 2.4706 11 1 6.6374 6.4987 1.4522 12 6 6.9053 6.9637 3.5182 13 7 6.6865 6.5844 4.7583 14 14 7.8232 8.5542 3.1762 15 1 7.9388 8.7534 1.7091 16 1 7.0804 9.6928 3.7737 17 1 9.1808 8.4807 3.7737 18 6 4.2733 0.0003 0.0016 19 6 3.5843 -1.1974 0.0027 20 6 2.1994 -1.1989 0.0005 21 9 1.5246 -2.3692 0.0062 22 1 -0.3633 0.0004 1.0276 23 1 -0.3632 0.8899 -0.5142 24 1 -0.3634 -0.8901 -0.5136 25 1 1.6585 2.1321 -0.0004 26 1 5.2861 2.3724 -0.5135 27 1 3.7440 3.2615 -0.5146 28 1 3.6349 3.0754 1.9557 29 1 5.1770 2.1864 1.9568 30 1 4.8147 5.1209 3.3178 31 1 6.3564 4.2313 3.3185 32 1 7.0021 7.1304 5.4953 33 1 5.3533 0.0017 0.0024 34 1 4.1254 -2.1320 0.0039 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259628862.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:34 Heat of formation + Delta-G solvation = -86.418957 kcal Electronic energy + Delta-G solvation = -16972.317081 eV Core-core repulsion = 13976.680698 eV Total energy + Delta-G solvation = -2995.636383 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.00368 -39.56147 -38.35189 -34.07726 -32.95678 -32.59667 -29.98864 -28.67428 -27.14704 -24.96308 -23.00117 -22.43671 -20.46642 -18.54514 -17.65085 -16.74624 -16.35425 -15.80338 -15.57305 -14.83512 -14.70424 -14.36489 -13.98076 -13.66127 -13.51521 -13.43916 -13.37708 -12.72846 -12.38659 -12.35639 -11.95721 -11.48100 -11.27745 -11.23764 -11.12676 -10.76555 -10.70392 -10.64235 -10.02378 -9.28613 -9.04671 -8.69771 -8.45956 -8.23768 -6.07446 -4.08336 1.02881 1.09432 3.03245 3.30870 3.38263 3.42738 3.46104 4.14444 4.42273 4.51378 4.59040 4.66696 5.05651 5.11930 5.19096 5.30082 5.36905 5.37716 5.40579 5.43684 5.61252 5.83150 5.86315 5.98981 6.04711 6.08972 6.17533 6.34015 6.54085 6.70428 6.80167 7.22799 7.34046 7.91643 8.20953 8.68719 9.01758 9.57065 11.04533 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.049924 B = 0.003481 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.723402 B = 8042.774473 C = 8092.392746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.117 4.117 3 C -0.091 4.091 4 C -0.077 4.077 5 C -0.073 4.073 6 C -0.170 4.170 7 C 0.355 3.645 8 O -0.467 6.467 9 C -0.029 4.029 10 C -0.516 4.516 11 H 0.072 0.928 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.897 3.103 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.095 4.095 19 C -0.147 4.147 20 C 0.082 3.918 21 F -0.143 7.143 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.133 0.867 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.261 0.739 33 H 0.133 0.867 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.910 -15.094 -7.871 19.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.118 4.118 3 C -0.109 4.109 4 C -0.077 4.077 5 C -0.111 4.111 6 C -0.208 4.208 7 C 0.231 3.769 8 O -0.341 6.341 9 C -0.066 4.066 10 C -0.554 4.554 11 H 0.091 0.909 12 C -0.145 4.145 13 N -0.539 5.539 14 Si 0.725 3.275 15 H -0.195 1.195 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.113 4.113 19 C -0.166 4.166 20 C 0.063 3.937 21 F -0.122 7.122 22 H 0.092 0.908 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.151 0.849 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.151 0.849 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.749 -14.807 -8.254 19.555 hybrid contribution 0.372 0.470 0.193 0.630 sum -9.377 -14.337 -8.061 18.933 Atomic orbital electron populations 1.20724 0.90290 1.03184 1.02840 1.19927 0.96941 0.91949 1.03017 1.20888 0.93578 0.97108 0.99374 1.20115 0.93664 0.95699 0.98239 1.20460 1.00432 0.92733 0.97434 1.22245 1.02581 0.99124 0.96855 1.25202 0.74393 0.84505 0.92783 1.90237 1.45260 1.62981 1.35651 1.19613 0.98792 0.97091 0.91057 1.21241 1.35279 1.05079 0.93836 0.90946 1.25015 0.96210 0.98332 0.94976 1.69971 1.46954 1.38725 0.98240 0.86435 0.79375 0.83066 0.78607 1.19523 1.20977 1.20985 1.20962 1.00388 0.90914 0.99050 1.21108 0.92161 0.99749 1.03569 1.17528 0.90086 0.80819 1.05235 1.91455 1.80470 1.46122 1.94121 0.90772 0.90905 0.91378 0.84935 0.90294 0.90329 0.89057 0.89041 0.93034 0.93029 0.92949 0.84904 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.83 36.01 0.35 -0.63 16 2 C -0.12 -1.29 5.89 -104.55 -0.62 -1.90 16 3 C -0.09 -1.02 9.35 -39.59 -0.37 -1.39 16 4 C -0.08 -0.92 5.13 -104.62 -0.54 -1.45 16 5 C -0.07 -0.99 4.63 -27.88 -0.13 -1.12 16 6 C -0.17 -2.58 5.62 -27.88 -0.16 -2.73 16 7 C 0.35 7.39 7.15 -29.04 -0.21 7.18 16 8 O -0.47 -11.00 15.08 5.99 0.09 -10.91 16 9 C -0.03 -0.71 5.40 -29.04 -0.16 -0.87 16 10 C -0.52 -14.72 8.92 -34.44 -0.31 -15.03 16 11 H 0.07 2.13 6.76 -52.48 -0.35 1.78 16 12 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -26.30 13.29 55.43 0.74 -25.57 16 14 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 15 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 18 C -0.10 -1.05 9.70 -39.60 -0.38 -1.43 16 19 C -0.15 -1.57 10.03 -39.51 -0.40 -1.97 16 20 C 0.08 0.95 7.24 -39.41 -0.29 0.67 16 21 F -0.14 -1.69 16.48 2.25 0.04 -1.66 16 22 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 24 H 0.07 0.57 7.64 -51.93 -0.40 0.17 16 25 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 26 H 0.08 1.10 8.04 -51.92 -0.42 0.68 16 27 H 0.08 1.09 8.04 -51.93 -0.42 0.68 16 28 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.05 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 301.83 15.07 4.55 4.55 Total: -1.00 -31.15 301.83 -7.42 -38.57 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -4.52 Total: -2.63 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -3.29 Total: -19.20 kcal Atomic # 7 Polarization: -26.30 SS G_CDS: 0.74 Total: -25.57 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.15 -7.42 -38.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259628862.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.845 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds