Wall clock time and date at job start Mon Mar 30 2020 06:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99836 * 2 1 4 4 H 1.48502 * 109.47031 * 240.00086 * 3 2 1 5 5 H 1.48495 * 109.47181 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46978 * 120.00500 * 3 2 1 7 7 C 1.37880 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99998 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99965 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47224 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46999 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46831 * 180.02562 * 11 10 9 13 13 O 1.20755 * 120.00201 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99925 * 180.02562 * 12 11 10 15 15 C 1.50698 * 109.47172 * 179.97438 * 14 12 11 16 16 C 1.38271 * 119.98983 * 270.25578 * 15 14 12 17 17 C 1.38219 * 120.05279 * 180.25774 * 16 15 14 18 18 C 1.38227 * 120.02402 * 359.48356 * 17 16 15 19 19 C 1.38435 * 119.97416 * 0.26250 * 18 17 16 20 20 F 1.35097 * 120.02437 * 179.97438 * 19 18 17 21 21 C 1.38179 * 119.98470 * 90.00076 * 15 14 12 22 22 H 0.96998 * 119.99933 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47184 * 60.00160 * 9 7 2 24 24 H 1.09001 * 109.46857 * 300.00191 * 9 7 2 25 25 H 1.09004 * 109.46636 * 60.00159 * 10 9 7 26 26 H 1.09001 * 109.47146 * 299.99843 * 10 9 7 27 27 H 1.08999 * 109.47243 * 60.00152 * 11 10 9 28 28 H 1.09001 * 109.47146 * 299.99969 * 11 10 9 29 29 H 1.09007 * 109.46973 * 59.99828 * 14 12 11 30 30 H 1.08994 * 109.47082 * 299.99881 * 14 12 11 31 31 H 1.08000 * 119.97479 * 0.02562 * 16 15 14 32 32 H 1.08002 * 119.99072 * 179.76964 * 17 16 15 33 33 H 1.07999 * 120.01289 * 180.23490 * 18 17 16 34 34 H 1.07994 * 120.01414 * 0.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 6 2.4596 -6.1325 -0.0018 13 8 3.6468 -5.9119 -0.0032 14 6 1.9572 -7.5534 -0.0019 15 6 3.1293 -8.5005 -0.0032 16 6 3.6693 -8.9304 -1.2014 17 6 4.7409 -9.8033 -1.2041 18 6 5.2809 -10.2393 -0.0087 19 6 4.7445 -9.8055 1.1915 20 9 5.2711 -10.2314 2.3604 21 6 3.6674 -8.9351 1.1930 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8726 -3.6047 0.8878 26 1 2.8712 -3.6040 -0.8923 27 1 0.8526 -5.0447 -0.8905 28 1 0.8545 -5.0450 0.8895 29 1 1.3513 -7.7244 -0.8918 30 1 1.3521 -7.7248 0.8882 31 1 3.2510 -8.5867 -2.1359 32 1 5.1595 -10.1413 -2.1406 33 1 6.1207 -10.9184 -0.0111 34 1 3.2479 -8.5963 2.1287 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259716929.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:28 Heat of formation + Delta-G solvation = -83.346193 kcal Electronic energy + Delta-G solvation = -16873.144888 eV Core-core repulsion = 13877.641749 eV Total energy + Delta-G solvation = -2995.503138 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.03442 -39.96282 -38.53207 -34.24487 -33.06512 -32.05724 -30.73817 -28.98121 -27.13012 -23.93423 -22.93134 -22.01008 -20.25164 -19.24525 -17.43993 -16.60961 -16.41282 -16.30717 -15.81845 -15.47504 -15.29863 -14.63673 -14.40683 -14.09430 -13.71981 -13.21476 -13.09154 -12.39555 -12.22463 -12.11942 -11.82753 -11.74944 -11.35610 -11.24088 -10.79869 -10.63106 -10.57535 -9.74042 -9.70188 -9.34744 -9.14900 -8.96314 -8.72517 -8.33322 -5.98978 -4.00753 0.96842 1.02555 2.20119 3.35354 3.35454 3.39047 3.42717 4.02015 4.29388 4.43986 4.49666 4.55347 4.80850 4.98596 5.08758 5.24084 5.35871 5.36945 5.42315 5.67508 5.69700 5.79936 5.88283 5.91394 6.09209 6.27899 6.31838 6.67564 6.71005 6.87968 7.11268 7.68215 7.77105 7.81382 8.01300 8.45103 9.06137 9.63326 11.12417 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.042677 B = 0.003364 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.938310 B = 8320.562260 C = 8462.831270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.102 4.102 11 C -0.168 4.168 12 C 0.354 3.646 13 O -0.444 6.444 14 C -0.139 4.139 15 C -0.040 4.040 16 C -0.120 4.120 17 C -0.089 4.089 18 C -0.159 4.159 19 C 0.098 3.902 20 F -0.142 7.142 21 C -0.144 4.144 22 H 0.261 0.739 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.181 -21.607 -1.171 22.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.140 4.140 11 C -0.206 4.206 12 C 0.228 3.772 13 O -0.316 6.316 14 C -0.177 4.177 15 C -0.040 4.040 16 C -0.138 4.138 17 C -0.107 4.107 18 C -0.178 4.178 19 C 0.079 3.921 20 F -0.120 7.120 21 C -0.163 4.163 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.129 0.871 30 H 0.127 0.873 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.691 -21.380 -1.122 21.917 hybrid contribution 0.415 0.844 0.249 0.972 sum 5.105 -20.536 -0.873 21.179 Atomic orbital electron populations 1.69947 1.06040 1.26689 1.51036 1.25018 0.94860 0.99249 0.95337 0.86653 0.79585 0.83063 0.78692 1.20219 1.21296 1.20224 1.21242 0.93122 0.91095 1.50408 0.92697 1.19119 0.93937 0.91431 0.97143 1.21496 0.98789 0.92341 1.01372 1.22229 0.99070 0.95145 1.04108 1.24761 0.90481 0.91077 0.70871 1.90404 1.19278 1.87290 1.34659 1.21321 0.96885 0.93550 1.05924 1.19393 0.96378 0.95696 0.92533 1.21103 0.96989 0.97878 0.97809 1.20971 0.95628 0.96629 0.97516 1.21121 1.02082 1.03186 0.91399 1.17657 0.95131 0.97963 0.81336 1.91494 1.85657 1.88512 1.46374 1.21004 0.96958 0.98930 0.99377 0.92978 0.96593 0.96591 0.92926 0.92902 0.88804 0.88834 0.87134 0.87302 0.85339 0.84985 0.84920 0.84833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.10 -2.15 4.44 -26.73 -0.12 -2.27 16 11 C -0.17 -2.58 5.64 -27.88 -0.16 -2.74 16 12 C 0.35 5.00 7.15 -29.03 -0.21 4.80 16 13 O -0.44 -8.03 15.66 6.00 0.09 -7.94 16 14 C -0.14 -1.37 5.76 -29.04 -0.17 -1.54 16 15 C -0.04 -0.44 4.37 -104.63 -0.46 -0.90 16 16 C -0.12 -1.22 9.70 -39.58 -0.38 -1.61 16 17 C -0.09 -0.83 10.04 -39.59 -0.40 -1.23 16 18 C -0.16 -1.61 10.03 -39.51 -0.40 -2.00 16 19 C 0.10 1.16 7.30 -39.42 -0.29 0.87 16 20 F -0.14 -1.76 17.27 2.25 0.04 -1.72 16 21 C -0.14 -1.68 9.68 -39.51 -0.38 -2.06 16 22 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 1.15 8.10 -51.93 -0.42 0.73 16 26 H 0.05 1.15 8.10 -51.93 -0.42 0.73 16 27 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.11 0.82 8.09 -51.93 -0.42 0.40 16 30 H 0.11 0.84 8.09 -51.93 -0.42 0.42 16 31 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 303.96 15.07 4.58 4.58 Total: -1.00 -33.01 303.96 -7.68 -40.70 By element: Atomic # 1 Polarization: 0.42 SS G_CDS: -4.60 Total: -4.18 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -3.51 Total: -22.10 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.29 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.09 Total: -7.94 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.01 -7.68 -40.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259716929.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.651 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds