Wall clock time and date at job start Mon Mar 30 2020 06:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99779 * 2 1 4 4 H 1.48503 * 109.47255 * 264.61421 * 3 2 1 5 5 H 1.48497 * 109.47156 * 24.61788 * 3 2 1 6 6 H 1.48502 * 109.46802 * 144.61420 * 3 2 1 7 7 C 1.37872 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00078 * 4.75515 * 7 2 1 9 9 C 1.50700 * 120.00068 * 184.75738 * 7 2 1 10 10 H 1.08996 * 109.46818 * 4.79422 * 9 7 2 11 11 C 1.50701 * 109.47125 * 124.79893 * 9 7 2 12 12 C 1.38220 * 120.01485 * 60.00131 * 11 9 7 13 13 C 1.38221 * 120.02796 * 179.97438 * 12 11 9 14 14 C 1.38267 * 120.04710 * 0.02562 * 13 12 11 15 15 C 1.38170 * 120.02959 * 359.97438 * 14 13 12 16 16 C 1.38436 * 120.01119 * 239.72446 * 11 9 7 17 17 F 1.35101 * 120.02644 * 359.97438 * 16 11 9 18 18 C 1.53000 * 109.46778 * 244.79955 * 9 7 2 19 19 H 1.09005 * 110.83452 * 298.67672 * 18 9 7 20 20 C 1.54813 * 110.90587 * 175.03782 * 18 9 7 21 21 C 1.54108 * 104.18627 * 220.92036 * 20 18 9 22 22 O 1.43748 * 107.29146 * 357.96572 * 21 20 18 23 23 C 1.44379 * 106.97680 * 26.51730 * 22 21 20 24 24 H 0.97001 * 120.00186 * 0.02562 * 1 2 3 25 25 H 1.08003 * 119.98334 * 359.95266 * 12 11 9 26 26 H 1.08000 * 119.97344 * 179.97438 * 13 12 11 27 27 H 1.08002 * 119.98247 * 179.97438 * 14 13 12 28 28 H 1.07997 * 120.01285 * 179.97438 * 15 14 13 29 29 H 1.09001 * 110.48488 * 339.58970 * 20 18 9 30 30 H 1.08998 * 110.49128 * 102.10996 * 20 18 9 31 31 H 1.09002 * 109.87833 * 117.38970 * 21 20 18 32 32 H 1.08997 * 109.87547 * 238.39640 * 21 20 18 33 33 H 1.09002 * 110.61837 * 201.44078 * 23 22 21 34 34 H 1.09005 * 110.61763 * 78.43503 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6104 1.9808 -1.3939 5 1 1.3943 2.6828 0.5832 6 1 3.4851 1.4757 0.8108 7 6 2.0045 -1.1940 0.0005 8 1 1.4673 -2.1278 -0.0766 9 6 3.5076 -1.1962 0.1088 10 1 3.8623 -0.1771 0.2625 11 6 3.9261 -2.0550 1.2743 12 6 3.5875 -3.3948 1.3027 13 6 3.9716 -4.1828 2.3713 14 6 4.6944 -3.6318 3.4133 15 6 5.0340 -2.2928 3.3872 16 6 4.6547 -1.5036 2.3143 17 9 4.9915 -0.1956 2.2847 18 6 4.1109 -1.7571 -1.1806 19 1 3.7886 -2.7855 -1.3441 20 6 5.6558 -1.6599 -1.1556 21 6 6.0296 -1.2187 -2.5840 22 8 4.8087 -1.1326 -3.3379 23 6 3.7489 -0.8644 -2.3948 24 1 -0.4850 0.8400 -0.0004 25 1 3.0223 -3.8260 0.4896 26 1 3.7062 -5.2295 2.3928 27 1 4.9936 -4.2484 4.2480 28 1 5.5983 -1.8626 4.2014 29 1 5.9794 -0.9145 -0.4291 30 1 6.0955 -2.6306 -0.9266 31 1 6.5170 -0.2441 -2.5553 32 1 6.6960 -1.9531 -3.0363 33 1 2.7834 -1.1539 -2.8097 34 1 3.7457 0.1879 -2.1101 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259725638.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:13 Heat of formation + Delta-G solvation = -76.467254 kcal Electronic energy + Delta-G solvation = -18832.762744 eV Core-core repulsion = 15837.557899 eV Total energy + Delta-G solvation = -2995.204845 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.26207 -39.21531 -38.14258 -34.53132 -32.08897 -30.43966 -29.93005 -28.94293 -26.61758 -23.57024 -22.38059 -21.70695 -21.06070 -19.19323 -17.46821 -16.87585 -15.78344 -15.67523 -15.39258 -15.16183 -14.77636 -14.48448 -14.10766 -13.57052 -13.24900 -12.78981 -12.53393 -12.52591 -11.95214 -11.87770 -11.79144 -11.19297 -11.08978 -10.92680 -10.74146 -10.35135 -10.27501 -9.84139 -9.66474 -9.18602 -9.09229 -8.65532 -8.35139 -7.93517 -6.22391 -4.23216 1.71948 1.82995 3.21017 3.30345 3.33851 4.17052 4.30122 4.52853 4.86941 5.04124 5.20929 5.26080 5.30413 5.37649 5.51629 5.59713 5.67912 5.85648 5.93142 6.01745 6.13353 6.25010 6.33069 6.42185 6.49508 6.58356 6.64610 6.67300 6.80302 6.89047 6.98324 7.23458 7.41728 7.47552 7.57384 8.33948 8.81296 9.38730 10.89567 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.015958 B = 0.011594 C = 0.008748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.147646 B = 2414.521094 C = 3199.875207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.080 3.920 3 Si 0.856 3.144 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.254 1.254 7 C -0.507 4.507 8 H 0.080 0.920 9 C 0.044 3.956 10 H 0.058 0.942 11 C -0.058 4.058 12 C -0.084 4.084 13 C -0.133 4.133 14 C -0.121 4.121 15 C -0.158 4.158 16 C 0.077 3.923 17 F -0.145 7.145 18 C -0.099 4.099 19 H 0.078 0.922 20 C -0.159 4.159 21 C 0.049 3.951 22 O -0.391 6.391 23 C 0.061 3.939 24 H 0.267 0.733 25 H 0.129 0.871 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.123 0.877 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.476 -4.844 2.237 11.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.123 4.123 3 Si 0.684 3.316 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.179 1.179 7 C -0.544 4.544 8 H 0.098 0.902 9 C 0.025 3.975 10 H 0.076 0.924 11 C -0.059 4.059 12 C -0.102 4.102 13 C -0.152 4.152 14 C -0.139 4.139 15 C -0.177 4.177 16 C 0.058 3.942 17 F -0.123 7.123 18 C -0.118 4.118 19 H 0.096 0.904 20 C -0.197 4.197 21 C -0.028 4.028 22 O -0.310 6.310 23 C -0.014 4.014 24 H 0.077 0.923 25 H 0.147 0.853 26 H 0.137 0.863 27 H 0.138 0.862 28 H 0.141 0.859 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.277 -4.682 2.004 11.470 hybrid contribution 0.385 1.227 0.457 1.365 sum 10.662 -3.455 2.461 11.475 Atomic orbital electron populations 1.69873 1.06202 1.27287 1.49159 1.25023 0.94665 0.98699 0.93925 0.87195 0.80946 0.84138 0.79350 1.19457 1.21317 1.17865 1.20811 0.87673 0.94943 1.50974 0.90203 1.18428 0.97309 0.94740 0.87024 0.92367 1.20555 0.93268 0.95201 0.96879 1.20886 0.98240 0.92709 0.98351 1.21122 0.99609 0.99794 0.94634 1.20735 1.00135 0.94123 0.98939 1.20966 1.03849 0.94791 0.98063 1.17685 1.01048 0.78397 0.97042 1.91445 1.90719 1.33565 1.96606 1.22872 0.91696 1.00269 0.96976 0.90365 1.23094 0.98268 1.01712 0.96646 1.23055 0.88207 0.99805 0.91781 1.88789 1.16834 1.92937 1.32437 1.23568 0.90793 0.98553 0.88513 0.92323 0.85334 0.86327 0.86210 0.85929 0.91297 0.91283 0.93360 0.90787 0.88222 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.96 55.43 0.77 -25.17 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.86 20.84 25.92 -169.99 -4.41 16.43 16 4 H -0.27 -6.32 6.80 56.52 0.38 -5.94 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.25 -6.09 6.21 56.52 0.35 -5.74 16 7 C -0.51 -13.12 7.94 -34.44 -0.27 -13.39 16 8 H 0.08 2.22 7.89 -52.48 -0.41 1.81 16 9 C 0.04 0.97 1.29 -92.92 -0.12 0.85 16 10 H 0.06 1.37 3.44 -51.93 -0.18 1.19 16 11 C -0.06 -1.17 4.29 -104.56 -0.45 -1.62 16 12 C -0.08 -1.51 8.77 -39.59 -0.35 -1.86 16 13 C -0.13 -2.03 10.04 -39.58 -0.40 -2.43 16 14 C -0.12 -1.76 10.04 -39.60 -0.40 -2.15 16 15 C -0.16 -2.56 10.03 -39.52 -0.40 -2.96 16 16 C 0.08 1.52 7.25 -39.42 -0.29 1.23 16 17 F -0.14 -3.02 16.19 2.25 0.04 -2.98 16 18 C -0.10 -1.93 2.45 -88.61 -0.22 -2.15 16 19 H 0.08 1.49 7.44 -51.93 -0.39 1.11 16 20 C -0.16 -2.68 6.11 -25.20 -0.15 -2.84 16 21 C 0.05 0.78 7.70 37.74 0.29 1.07 16 22 O -0.39 -7.51 11.52 -35.23 -0.41 -7.92 16 23 C 0.06 1.25 6.60 38.21 0.25 1.50 16 24 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.13 2.27 7.51 -52.48 -0.39 1.88 16 26 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 27 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.07 1.19 7.84 -51.93 -0.41 0.78 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.10 2.06 8.14 -51.93 -0.42 1.64 16 34 H 0.05 1.15 6.13 -51.93 -0.32 0.83 16 LS Contribution 281.00 15.07 4.23 4.23 Total: -1.00 -28.73 281.00 -6.62 -35.35 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -4.26 Total: 2.69 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -2.59 Total: -22.64 kcal Atomic # 7 Polarization: -25.94 SS G_CDS: 0.77 Total: -25.17 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.41 Total: -7.92 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.04 Total: -2.98 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.41 Total: 16.43 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.73 -6.62 -35.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259725638.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.117 kcal (2) G-P(sol) polarization free energy of solvation -28.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds